SRR1547336_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547336_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1192579
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29320	2.4585373379876723	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2243	0.18807978339380452	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1330	0.11152301021567544	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGCAAT	35	1.2119744E-7	45.000004	19
TCGTTTC	20	7.0333935E-4	45.0	18
AATCCGA	20	7.0333935E-4	45.0	37
ATTAGCG	50	2.1827873E-11	45.0	1
TTTACGG	85	0.0	45.0	2
CGACGCG	20	7.0333935E-4	45.0	38
CGACGAT	20	7.0333935E-4	45.0	35
ACCGCGT	20	7.0333935E-4	45.0	15
GGCGTAA	40	6.8157533E-9	45.0	8
TAAGTCG	20	7.0333935E-4	45.0	1
ATAGACG	20	7.0333935E-4	45.0	1
ACTTACG	45	3.8562575E-10	45.0	1
CTACGCT	20	7.0333935E-4	45.0	33
TTGCGAA	25	3.890894E-5	45.0	1
GAACGCG	20	7.0333935E-4	45.0	1
TCGTAAG	40	6.8157533E-9	45.0	1
CGTAAGC	25	3.890894E-5	45.0	20
TATAGCG	85	0.0	45.0	1
CCGAATC	20	7.0333935E-4	45.0	19
TCGACTC	20	7.0333935E-4	45.0	38