##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547329_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1276041 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.30471042858341 31.0 31.0 33.0 30.0 34.0 2 31.709038345946563 31.0 31.0 34.0 30.0 34.0 3 31.66396064076311 31.0 31.0 34.0 30.0 34.0 4 35.5371865010607 37.0 35.0 37.0 33.0 37.0 5 35.4706267275111 37.0 35.0 37.0 33.0 37.0 6 35.5272087652356 37.0 35.0 37.0 33.0 37.0 7 35.93142540090796 37.0 35.0 37.0 35.0 37.0 8 35.92314196800886 37.0 35.0 37.0 35.0 37.0 9 37.628353634405165 39.0 37.0 39.0 35.0 39.0 10 36.92752897438248 39.0 37.0 39.0 32.0 39.0 11 36.71867675098214 39.0 37.0 39.0 32.0 39.0 12 36.595834303129756 39.0 35.0 39.0 32.0 39.0 13 36.54006336786984 39.0 35.0 39.0 32.0 39.0 14 37.68790187776098 40.0 36.0 41.0 32.0 41.0 15 37.75534328442425 40.0 36.0 41.0 32.0 41.0 16 37.77654401386789 40.0 36.0 41.0 32.0 41.0 17 37.67096981993525 40.0 36.0 41.0 32.0 41.0 18 37.45022534542385 39.0 36.0 41.0 32.0 41.0 19 37.27797852890307 39.0 36.0 41.0 32.0 41.0 20 37.021499309191476 39.0 35.0 41.0 32.0 41.0 21 36.90935714448047 38.0 35.0 41.0 31.0 41.0 22 36.835339930300044 38.0 35.0 40.0 31.0 41.0 23 36.74308349026403 38.0 35.0 40.0 31.0 41.0 24 36.590354855369064 38.0 35.0 40.0 31.0 41.0 25 36.49147715473092 38.0 35.0 40.0 31.0 41.0 26 36.36761671450996 38.0 35.0 40.0 30.0 41.0 27 36.28429102199694 38.0 35.0 40.0 30.0 41.0 28 36.29376877388736 38.0 35.0 40.0 30.0 41.0 29 36.26284265160759 38.0 35.0 40.0 30.0 41.0 30 36.15707645757464 38.0 35.0 40.0 30.0 41.0 31 35.9940621030202 38.0 35.0 40.0 30.0 41.0 32 35.75120862103961 38.0 35.0 40.0 28.0 41.0 33 35.3599829472564 38.0 34.0 40.0 25.0 41.0 34 34.93413456150704 38.0 34.0 40.0 23.0 41.0 35 34.63997708537578 38.0 34.0 40.0 22.0 41.0 36 34.43185446235662 38.0 33.0 40.0 21.0 41.0 37 34.32142149037531 38.0 33.0 40.0 20.0 41.0 38 34.20135795009721 38.0 33.0 40.0 19.0 41.0 39 34.13591804652045 38.0 33.0 40.0 18.0 41.0 40 33.987346017878735 38.0 33.0 40.0 18.0 41.0 41 33.875052604109115 38.0 33.0 40.0 18.0 41.0 42 33.78806950560366 38.0 33.0 40.0 18.0 41.0 43 33.7298104057785 38.0 33.0 40.0 18.0 41.0 44 33.58971302646231 37.0 33.0 40.0 17.0 41.0 45 33.49955604874765 37.0 33.0 40.0 17.0 41.0 46 33.41916834960632 37.0 32.0 40.0 17.0 41.0 47 33.28793432185957 37.0 32.0 40.0 17.0 41.0 48 33.216720309143675 37.0 32.0 40.0 17.0 41.0 49 33.097242956926934 36.0 32.0 40.0 15.0 41.0 50 33.02506972738337 36.0 32.0 40.0 15.0 41.0 51 32.61296384677295 36.0 31.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 2.0 13 9.0 14 20.0 15 45.0 16 128.0 17 362.0 18 786.0 19 1497.0 20 2573.0 21 3968.0 22 6157.0 23 9083.0 24 13567.0 25 21001.0 26 29733.0 27 34836.0 28 34533.0 29 33758.0 30 35893.0 31 40223.0 32 47253.0 33 58055.0 34 80903.0 35 104619.0 36 106637.0 37 130102.0 38 187989.0 39 292243.0 40 62.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.13688431641303 22.396929252273242 25.895641284253408 21.570545147060322 2 37.55459268158312 23.376678335570723 27.1512435728946 11.917485409951562 3 26.48950934962121 23.689912784934027 37.44354609295469 12.377031772490069 4 23.85832430149188 25.84987472973047 37.22458761121312 13.06721335756453 5 21.258642943291008 30.21634884772511 35.56766592922955 12.957342279754332 6 19.794426668108628 38.451742538053246 32.5495027197402 9.204328074097932 7 81.99329018424957 2.9566448100021865 13.685453680563556 1.3646113251846923 8 82.90344902710807 2.4060355427451 13.507716444847775 1.1827989852990617 9 78.08385467238122 5.137452479975173 14.786593847689847 1.9920989999537633 10 30.736238098932557 35.26007393179373 24.489573610879276 9.51411435839444 11 24.280959624338088 25.029524913384442 34.21065624066939 16.478859221608083 12 24.21426897725073 23.053099391007027 35.43977035220655 17.29286127953569 13 22.238783863527896 23.764753640361086 35.9261967287885 18.070265767322525 14 18.341495296781215 27.339011834259242 36.21913402469043 18.10035884426911 15 18.236326262243924 27.868618641564026 37.78891117134951 16.106143924842538 16 21.993415572070177 26.77453153934709 36.72656286122468 14.505490027358055 17 21.29351643089838 26.27423413511008 34.26872647508975 18.16352295890179 18 20.565796867028567 27.33673918001067 34.971290107449526 17.126173845511232 19 22.3048475715122 27.525212747866252 33.21625245583802 16.95368722478353 20 23.75197975613636 27.789937784130757 33.102384641245855 15.355697818487023 21 23.950092512701392 25.508819857669152 35.25740944060575 15.283678189023705 22 22.393559454594328 23.379421194146584 35.67197292250014 18.55504642875895 23 20.1198080625936 26.57955347829733 35.5142193706942 17.78641908841487 24 19.76738991928943 26.990120223409747 36.132302958917464 17.110186898383358 25 20.533196033669764 28.209595146237465 33.86717197958372 17.390036840509044 26 20.05264721117895 30.02011690846924 32.292692789651745 17.634543090700063 27 18.607239109088187 28.793745655507934 35.06917097491382 17.529844260490062 28 17.97802735178572 28.772272991228338 36.24664097783692 17.003058679149024 29 19.33911214451573 27.270518737250605 35.44564790629769 17.94472121193598 30 19.875223445014697 26.93377407152278 35.03680524371866 18.154197239743862 31 20.960298297625233 27.836096175593106 33.37831621397745 17.825289312804212 32 21.69044725051938 27.76956226328151 33.31397658852654 17.22601389767257 33 20.896899080828906 27.95513623778546 32.77136079483339 18.376603886552235 34 19.711200502178222 28.98488371455149 32.86783104931582 18.436084733954473 35 20.04551577888171 28.796723616247437 32.17310415574421 18.984656449126636 36 21.41435894301202 30.057184682937304 30.82244222560247 17.706014148448208 37 20.548164204755174 30.572685360423375 30.521041251809304 18.358109183012143 38 20.056408845797275 31.186223640149496 29.911656443640915 18.845711070412314 39 20.120121532145127 29.89958786590713 30.00412996134137 19.976160640606373 40 21.427132827236743 29.22304220632409 30.902533696017603 18.447291270421562 41 19.3637195043106 29.852959270117495 31.165613017136597 19.617708208435307 42 20.629823022927944 30.587340061957256 29.264263452349887 19.51857346276491 43 20.554511963173596 29.692227757572056 29.97615280386759 19.777107475386764 44 20.426929855702127 30.04801569855514 30.12144594100033 19.403608504742405 45 20.323876740637644 30.007969963347573 29.590898725040965 20.077254570973814 46 20.55819523040404 30.29244358135828 29.38157943200885 19.767781756228835 47 20.566815643071028 29.961263000170057 29.98022790803744 19.491693448721474 48 19.92036306043458 30.207414965506597 30.421671403975264 19.450550570083564 49 20.45686619787295 29.684155916620234 30.43703141200009 19.42194647350673 50 19.33221581438214 29.8078980220855 31.233714277205827 19.62617188632654 51 19.09217650530038 30.472375103934745 30.67221194303318 19.763236447731693 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1411.0 1 1770.0 2 2129.0 3 22720.0 4 43311.0 5 29330.0 6 15349.0 7 15242.0 8 15135.0 9 15839.0 10 16543.0 11 16855.5 12 17168.0 13 16970.0 14 16772.0 15 15965.0 16 15158.0 17 14521.0 18 13884.0 19 13098.5 20 12313.0 21 11726.0 22 11139.0 23 11589.0 24 12039.0 25 13019.0 26 15582.0 27 17165.0 28 19982.0 29 22799.0 30 26170.0 31 29541.0 32 32833.5 33 36126.0 34 39338.5 35 42551.0 36 47037.0 37 51523.0 38 55693.0 39 59863.0 40 66170.5 41 72478.0 42 74956.0 43 77434.0 44 79144.0 45 80854.0 46 84941.0 47 89028.0 48 88376.0 49 87724.0 50 82964.0 51 78204.0 52 73491.5 53 68779.0 54 62850.0 55 56921.0 56 53201.5 57 49482.0 58 46246.5 59 43011.0 60 38733.5 61 34456.0 62 30163.5 63 25871.0 64 21474.5 65 17078.0 66 13894.5 67 10711.0 68 8926.5 69 7142.0 70 5826.5 71 4511.0 72 3722.0 73 2933.0 74 2387.0 75 1417.5 76 994.0 77 683.0 78 372.0 79 252.0 80 132.0 81 106.0 82 80.0 83 52.0 84 24.0 85 24.0 86 24.0 87 19.5 88 15.0 89 12.5 90 10.0 91 9.0 92 8.0 93 6.5 94 5.0 95 2.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1276041.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.42919300047168 #Duplication Level Percentage of deduplicated Percentage of total 1 75.30274568107417 22.16099036113767 2 6.666925077910019 3.924044496749973 3 3.098068352059673 2.735209543842521 4 2.066893668612009 2.4330805074014314 5 1.3904149778941821 2.045939536759723 6 1.0855379230276039 1.916790302766632 7 0.9031667397906917 1.8605627807834937 8 0.7306878868595954 1.720284387639828 9 0.6834587947366767 1.8102276700357876 >10 7.642833001393015 47.96009635514903 >50 0.40354542759824485 7.322389042729288 >100 0.02384687234808665 1.3510721300449904 >500 8.038271554430001E-4 0.18538406517131406 >1k 8.038271554430001E-4 0.25761367116745343 >5k 0.0 0.0 >10k+ 2.679423851476667E-4 2.316315148620736 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29375 2.3020420190260347 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.836738788173734E-5 0.0 0.0 0.02155103166747777 0.0 2 7.836738788173734E-5 0.0 0.0 0.07076575125720883 0.0 3 7.836738788173734E-5 0.0 0.0 0.1213127164409294 0.0 4 7.836738788173734E-5 0.0 0.0 0.1861225462191262 0.0 5 7.836738788173734E-5 0.0 0.0 0.3446597719038808 0.0 6 7.836738788173734E-5 0.0 0.0 0.6456689087576339 0.0 7 7.836738788173734E-5 0.0 0.0 0.8498943215774415 0.0 8 7.836738788173734E-5 0.0 0.0 1.102158943168754 0.0 9 7.836738788173734E-5 0.0 0.0 1.242985139192236 0.0 10 7.836738788173734E-5 0.0 0.0 1.380206435373158 0.0 11 7.836738788173734E-5 0.0 0.0 1.5030864995717221 0.0 12 7.836738788173734E-5 0.0 0.0 1.595638384660054 0.0 13 7.836738788173734E-5 0.0 0.0 1.654727395122884 0.0 14 7.836738788173734E-5 0.0 0.0 1.697986193233603 0.0 15 7.836738788173734E-5 0.0 0.0 1.7287845766711258 0.0 16 7.836738788173734E-5 0.0 0.0 1.7741592942546518 0.0 17 7.836738788173734E-5 0.0 0.0 1.8253331985414263 0.0 18 7.836738788173734E-5 0.0 0.0 1.8991552779260228 0.0 19 7.836738788173734E-5 0.0 0.0 1.9472728540854094 0.0 20 7.836738788173734E-5 0.0 0.0 1.9989169626994745 0.0 21 7.836738788173734E-5 0.0 0.0 2.061454138229101 0.0 22 7.836738788173734E-5 0.0 0.0 2.13088764389232 0.0 23 7.836738788173734E-5 0.0 0.0 2.2086280926710034 0.0 24 7.836738788173734E-5 0.0 0.0 2.2699897573824037 0.0 25 7.836738788173734E-5 0.0 0.0 2.3297057069482876 0.0 26 7.836738788173734E-5 0.0 0.0 2.390205330392989 0.0 27 7.836738788173734E-5 0.0 0.0 2.450078014734636 0.0 28 7.836738788173734E-5 0.0 0.0 2.5164551922704677 0.0 29 7.836738788173734E-5 0.0 0.0 2.5917662520248173 0.0 30 7.836738788173734E-5 0.0 0.0 2.6836911980100955 0.0 31 7.836738788173734E-5 0.0 0.0 2.7597075642553803 0.0 32 1.5673477576347468E-4 0.0 0.0 2.8419933215312048 0.0 33 1.5673477576347468E-4 0.0 0.0 2.927257039546535 0.0 34 1.5673477576347468E-4 0.0 0.0 3.0067215708586166 0.0 35 1.5673477576347468E-4 0.0 0.0 3.0956685561043886 0.0 36 2.3510216364521202E-4 0.0 0.0 3.186809828210849 0.0 37 2.3510216364521202E-4 0.0 0.0 3.2824180414265687 0.0 38 2.3510216364521202E-4 0.0 0.0 3.3871952390244515 0.0 39 2.3510216364521202E-4 0.0 0.0 3.5252785764720724 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAAGCG 25 3.8910475E-5 45.000004 1 CGTTTTT 14470 0.0 43.98929 1 TATAGCG 70 0.0 41.785713 1 TACGGGA 420 0.0 40.714287 4 GGCGATA 405 0.0 40.0 8 TAGCCGT 85 0.0 39.705883 44 GCTATCG 40 3.4586265E-7 39.375004 1 GCGATAT 115 0.0 39.130436 9 ACGGGTA 225 0.0 39.0 5 CGGGTAT 185 0.0 38.91892 6 GCCGCAT 70 0.0 38.571426 19 AGGGCGA 725 0.0 38.482758 6 GTTTTTT 16880 0.0 38.401955 2 AGGGATT 2405 0.0 37.983364 6 TAGGGTA 755 0.0 37.549667 5 CGAACGG 90 0.0 37.500004 2 GGCACCG 450 0.0 37.5 8 TAACGCG 30 1.1399925E-4 37.499996 1 CGTCCAA 30 1.1399925E-4 37.499996 32 CGGGATA 410 0.0 37.317074 6 >>END_MODULE