SRR1547316_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547316_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1832872
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27480	1.49928636587825	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4112	0.2243473630455373	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1935	0.10557202030474577	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGAG	65	0.0	45.000004	1
CGTATTG	20	7.0343877E-4	45.0	13
GCGCATC	20	7.0343877E-4	45.0	28
ACTTACG	40	6.8193913E-9	45.0	1
CCTCGAC	20	7.0343877E-4	45.0	22
GTTACGT	25	3.891717E-5	45.0	19
CGCTAAT	25	3.891717E-5	45.0	35
CGGCTCG	20	7.0343877E-4	45.0	20
ACCCGTG	20	7.0343877E-4	45.0	38
GCTCGAT	25	3.891717E-5	45.0	32
TAATGCG	55	1.8189894E-12	45.0	1
TCGAATA	25	3.891717E-5	45.0	21
TACGTAC	35	1.2124656E-7	45.0	13
CGTTTTT	14295	0.0	43.740818	1
CGGTCTA	260	0.0	43.269234	31
CGACGGT	245	0.0	42.2449	28
TTAGCGG	370	0.0	41.351353	2
GCTACGA	180	0.0	41.250004	10
CGTAAGG	225	0.0	41.0	2
TCGTCCC	600	0.0	40.875	38