##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547303_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2641284 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.375517740614036 31.0 31.0 33.0 30.0 34.0 2 31.789820784133777 31.0 31.0 34.0 30.0 34.0 3 31.88486205951348 31.0 31.0 34.0 30.0 34.0 4 35.668235979167704 37.0 35.0 37.0 33.0 37.0 5 35.57763951169204 37.0 35.0 37.0 33.0 37.0 6 35.61194820397958 37.0 35.0 37.0 33.0 37.0 7 35.955401615274994 37.0 35.0 37.0 35.0 37.0 8 35.94939695996341 37.0 35.0 37.0 35.0 37.0 9 37.68771854900874 39.0 37.0 39.0 35.0 39.0 10 37.02220889537058 39.0 37.0 39.0 33.0 39.0 11 36.74547909274429 39.0 37.0 39.0 32.0 39.0 12 36.36195161141324 38.0 35.0 39.0 32.0 39.0 13 36.20510478994307 38.0 35.0 39.0 32.0 39.0 14 37.28573754280115 39.0 36.0 41.0 32.0 41.0 15 37.43578880574751 39.0 35.0 41.0 32.0 41.0 16 37.53999683487274 39.0 35.0 41.0 32.0 41.0 17 37.451597783502265 39.0 35.0 41.0 32.0 41.0 18 37.33543004084377 39.0 36.0 41.0 32.0 41.0 19 37.2690702703685 39.0 35.0 41.0 32.0 41.0 20 37.13704281705413 39.0 35.0 41.0 32.0 41.0 21 36.98961527802387 39.0 35.0 41.0 31.0 41.0 22 36.90117571605325 39.0 35.0 41.0 31.0 41.0 23 36.789948752197795 38.0 35.0 40.0 31.0 41.0 24 36.67162789007165 38.0 35.0 40.0 31.0 41.0 25 36.579802474856926 38.0 35.0 40.0 31.0 41.0 26 36.35554222870392 38.0 35.0 40.0 30.0 41.0 27 36.336586296664805 38.0 35.0 40.0 30.0 41.0 28 36.38313941249786 38.0 35.0 40.0 30.0 41.0 29 36.399654486227156 38.0 35.0 40.0 30.0 41.0 30 36.36769086550329 38.0 35.0 40.0 30.0 41.0 31 36.30107440169251 38.0 35.0 40.0 30.0 41.0 32 36.13981343922123 38.0 35.0 40.0 30.0 41.0 33 35.98143819445391 38.0 35.0 40.0 30.0 41.0 34 35.786984284915974 38.0 35.0 40.0 29.0 41.0 35 35.66157293195279 38.0 35.0 40.0 28.0 41.0 36 35.43896718414226 38.0 34.0 40.0 27.0 41.0 37 35.41042046216916 38.0 34.0 40.0 27.0 41.0 38 35.31619545645224 38.0 34.0 40.0 27.0 41.0 39 35.183577002700204 38.0 34.0 40.0 26.0 41.0 40 35.04823108760739 38.0 34.0 40.0 25.0 41.0 41 35.008877500488396 38.0 34.0 40.0 25.0 41.0 42 34.92239001939966 38.0 34.0 40.0 25.0 41.0 43 34.81904217797102 37.0 34.0 40.0 25.0 41.0 44 34.72180840833473 37.0 34.0 40.0 24.0 41.0 45 34.565604456014576 37.0 33.0 40.0 24.0 41.0 46 34.481094422258266 37.0 33.0 40.0 24.0 41.0 47 34.42827692894819 37.0 33.0 40.0 24.0 41.0 48 34.312861850524214 36.0 33.0 40.0 23.0 41.0 49 34.171737306552416 36.0 33.0 40.0 24.0 41.0 50 34.04883382476099 36.0 33.0 40.0 23.0 41.0 51 33.576527931112295 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 4.0 13 20.0 14 47.0 15 87.0 16 198.0 17 609.0 18 1169.0 19 2315.0 20 3943.0 21 6301.0 22 9744.0 23 13792.0 24 20131.0 25 28424.0 26 37725.0 27 45662.0 28 50998.0 29 58031.0 30 68224.0 31 82461.0 32 102577.0 33 132534.0 34 203630.0 35 265066.0 36 225029.0 37 280209.0 38 395971.0 39 606197.0 40 181.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.42949868321619 23.388283880112855 28.43760837532049 14.744609061350463 2 32.10820949205008 25.372583940235128 28.982116273751707 13.53709029396309 3 28.856003368058868 25.897404444202138 31.52171443888654 13.724877748852451 4 25.610082066146617 28.074186645586007 31.250861323507813 15.064869964759565 5 23.26701710228813 31.948400853524273 30.147004260049282 14.637577784138319 6 22.658638752970145 40.875195548831556 26.3926181357249 10.073547562473403 7 89.22073506673269 3.0473436404415426 6.541666855968536 1.1902544368572254 8 89.51521305546848 2.4981410556380914 6.486390709972876 1.5002551789205554 9 84.20983885110424 5.186265467855785 8.068386436293864 2.5355092447461156 10 40.621455322487094 33.21903286431902 14.500409649246352 11.659102163947535 11 32.8074148785212 24.72377071151758 25.965628838095412 16.503185571865806 12 30.65331104114514 22.40879814514456 28.930247561413314 18.00764325229699 13 23.881377390693316 27.785804177059337 29.851314739346467 18.481503692900876 14 20.578324784460893 29.200494910808533 30.381019231555562 19.840161073175018 15 19.1662464165156 25.025707193925378 36.89921265566293 18.908833733896092 16 23.29351936406687 23.996056463447324 33.87962066934113 18.830803503144683 17 22.680408468002682 23.824662550486806 29.568687047663182 23.926241933847326 18 23.358525626172725 24.440840136842535 31.74766515073729 20.452969086247446 19 26.06690533846417 25.627990023034254 27.915021633417687 20.39008300508389 20 27.591694039717048 25.68356905202167 27.87894069702463 18.845796211236657 21 25.75663957378305 26.099048795964386 29.73951305501415 18.404798575238406 22 25.729152942281104 23.99427702587075 28.088914331060195 22.18765570078795 23 22.990295628944104 26.635606015861985 29.088352483110487 21.285745872083425 24 21.61270806168515 25.309092093088058 33.261701505782796 19.816498339443996 25 22.301577566062566 26.155422892805163 30.66777370400154 20.875225837130728 26 21.447182506689927 28.714367709038484 28.174251613987742 21.664198170283846 27 21.203929603935055 28.594161021684904 29.388017343080108 20.813892031299925 28 19.822934603018837 28.25852880644414 31.608111812285237 20.31042477825179 29 21.139869851178442 25.63310117352015 31.652067706463978 21.574961268837427 30 21.763770953823975 27.241788463489726 30.966719216865734 20.027721365820565 31 24.493806800026046 26.86912880250666 28.36147116326756 20.27559323419973 32 25.65165275676527 26.131116532716664 27.9935440490307 20.223686661487367 33 24.29231388975968 26.92705517468019 28.02315086147495 20.75748007408518 34 22.08346395162353 26.860913101355248 29.582543944536067 21.473079002485154 35 22.51204338495974 27.144638743883657 29.50561166462978 20.837706206526825 36 25.17907956887635 27.31277666468278 27.3743376327574 20.133806133683464 37 22.61748452646516 28.831697007970362 28.379038376789474 20.171780088775005 38 22.743748873653875 28.76597139875909 27.327504350156968 21.16277537743007 39 22.23687418694847 28.64228155700031 27.801440511508797 21.319403744542427 40 24.421720647987872 26.265142256569153 28.048062987546967 21.26507410789601 41 21.1389233418292 25.66766769495442 29.236121522713955 23.957287440502423 42 22.35019028623957 26.194570519489762 28.02103068053265 23.434208513738014 43 21.808635496977985 26.738889116051133 28.728451768155182 22.724023618815696 44 21.520972375556738 27.469897216656747 28.916049921174704 22.093080486611814 45 20.96219111613897 29.349664784248873 27.043816568002534 22.644327531609626 46 21.440254058253487 29.057306976455386 27.938457204904886 21.563981760386238 47 21.319593046412276 27.45834980259601 29.315704028798116 21.9063531221936 48 21.98832083183785 26.663092647363936 30.001279680640174 21.347306840158044 49 21.993545563445657 26.810823826593428 29.7358405987391 21.459790011221816 50 20.950492260582354 28.38388450465758 29.356744674181197 21.30887856057887 51 20.811847571105567 28.69649761252482 28.548425689929598 21.94322912644002 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2688.0 1 3971.0 2 5254.0 3 19165.0 4 33076.0 5 22526.0 6 11976.0 7 12328.0 8 12680.0 9 13869.0 10 15058.0 11 15510.5 12 15963.0 13 15721.0 14 15479.0 15 15027.0 16 14575.0 17 13662.0 18 12749.0 19 12313.5 20 11878.0 21 12650.0 22 13422.0 23 13762.0 24 14102.0 25 17245.0 26 24254.0 27 28120.0 28 34867.0 29 41614.0 30 46512.0 31 51410.0 32 60074.0 33 68738.0 34 75342.0 35 81946.0 36 89114.5 37 96283.0 38 105592.0 39 114901.0 40 127057.0 41 139213.0 42 152594.5 43 165976.0 44 171966.0 45 177956.0 46 182914.0 47 187872.0 48 186092.0 49 184312.0 50 178737.5 51 173163.0 52 166990.0 53 160817.0 54 150712.5 55 140608.0 56 134516.0 57 128424.0 58 126385.0 59 124346.0 60 110713.0 61 97080.0 62 87388.0 63 77696.0 64 69737.0 65 61778.0 66 53345.0 67 44912.0 68 38466.0 69 32020.0 70 27003.5 71 21987.0 72 19100.5 73 16214.0 74 13410.5 75 9022.5 76 7438.0 77 5423.0 78 3408.0 79 2444.5 80 1481.0 81 1220.5 82 960.0 83 643.0 84 326.0 85 283.5 86 241.0 87 164.5 88 88.0 89 60.0 90 32.0 91 23.0 92 14.0 93 12.5 94 11.0 95 7.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2641284.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.07426722033748 #Duplication Level Percentage of deduplicated Percentage of total 1 81.00010857377494 15.450177158125323 2 6.012446380946772 2.293660178362594 3 2.0249401660505404 1.1587274949732769 4 1.117281488942771 0.852453027217238 5 0.7496662279997305 0.7149666979464653 6 0.5348139688605074 0.6120710733128739 7 0.4451427365970146 0.594354005633063 8 0.35281966138456217 0.5383821201470499 9 0.30504030141111427 0.5236578199879094 >10 4.337774813000458 21.154569160192967 >50 2.083296859862623 28.49429818743025 >100 1.033460564327882 26.27706071810009 >500 0.002005160525666264 0.24772560970371618 >1k 0.001002580262833132 0.2801207913339536 >5k 0.0 0.0 >10k+ 2.005160525666264E-4 0.8077759575331921 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21120 0.799611098238584 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.786037396962992E-5 0.0 0.0 0.01855158324511866 0.0 2 3.786037396962992E-5 0.0 0.0 0.0726161972737502 0.0 3 3.786037396962992E-5 0.0 0.0 0.10949220152016974 0.0 4 3.786037396962992E-5 0.0 0.0 0.17756515391756433 0.0 5 3.786037396962992E-5 0.0 0.0 0.2963331470602934 0.0 6 3.786037396962992E-5 0.0 0.0 0.4986589855539957 0.0 7 3.786037396962992E-5 0.0 0.0 0.5991025576954239 0.0 8 3.786037396962992E-5 0.0 0.0 0.7968851513127706 0.0 9 3.786037396962992E-5 0.0 0.0 0.8877121884659128 0.0 10 3.786037396962992E-5 0.0 0.0 1.0393429862142807 0.0 11 3.786037396962992E-5 0.0 0.0 1.2242151923079836 0.0 12 3.786037396962992E-5 0.0 0.0 1.3669488021734884 0.0 13 3.786037396962992E-5 0.0 0.0 1.4400950446828134 0.0 14 3.786037396962992E-5 0.0 0.0 1.478485463888018 0.0 15 3.786037396962992E-5 0.0 0.0 1.5235014485379081 0.0 16 3.786037396962992E-5 0.0 0.0 1.6028567923782524 0.0 17 3.786037396962992E-5 0.0 0.0 1.6929644824259715 0.0 18 3.786037396962992E-5 0.0 0.0 1.803213891425534 0.0 19 3.786037396962992E-5 0.0 0.0 1.8712868438229286 0.0 20 3.786037396962992E-5 0.0 0.0 1.9450767126897373 0.0 21 3.786037396962992E-5 0.0 0.0 2.041658526686263 0.0 22 3.786037396962992E-5 0.0 0.0 2.1428214459331145 0.0 23 3.786037396962992E-5 0.0 0.0 2.2544338283955834 0.0 24 3.786037396962992E-5 0.0 0.0 2.3490090425717187 0.0 25 3.786037396962992E-5 0.0 0.0 2.433929861385599 0.0 26 3.786037396962992E-5 0.0 0.0 2.5095370282029497 0.0 27 7.572074793925984E-5 0.0 0.0 2.5960858430975238 0.0 28 7.572074793925984E-5 0.0 0.0 2.6785457376033777 0.0 29 7.572074793925984E-5 0.0 0.0 2.7764526646888408 0.0 30 7.572074793925984E-5 0.0 0.0 2.909001833956515 0.0 31 7.572074793925984E-5 0.0 0.0 3.017017480891869 0.0 32 7.572074793925984E-5 0.0 0.0 3.1220421582836226 0.0 33 7.572074793925984E-5 0.0 0.0 3.2265367904398015 0.0 34 7.572074793925984E-5 0.0 0.0 3.339095682251511 0.0 35 7.572074793925984E-5 0.0 0.0 3.4687674630974934 0.0 36 7.572074793925984E-5 0.0 0.0 3.579509056958661 0.0 37 7.572074793925984E-5 0.0 0.0 3.6889255377308916 0.0 38 7.572074793925984E-5 0.0 0.0 3.822194054103989 0.0 39 7.572074793925984E-5 0.0 0.0 4.02868453373435 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGGGAC 580 0.0 40.344826 5 CGTTTTT 10685 0.0 39.88301 1 TGCGATA 40 3.4605E-7 39.375 1 GGGCGAT 4715 0.0 38.748676 7 CGTAAGC 35 6.251372E-6 38.571426 37 CGTCGAA 35 6.251372E-6 38.571426 31 AGGGCGA 2630 0.0 38.070343 6 TTAGGGA 2915 0.0 37.59005 4 TAAGGGA 3400 0.0 37.588238 4 TAACGCC 90 0.0 37.5 12 CGAATAT 210 0.0 37.5 14 TAGTACG 90 0.0 37.5 1 AGGGATT 3905 0.0 37.33675 6 CGTTAGG 315 0.0 37.142857 2 TATCACG 85 0.0 37.058823 1 CATACGA 940 0.0 36.861702 18 TACGGGA 915 0.0 36.639343 4 TAACGGG 740 0.0 36.486485 3 AGTAGGG 3840 0.0 36.210938 3 GTTTACG 100 0.0 36.000004 1 >>END_MODULE