##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547298_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 892574 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.256984855037228 31.0 31.0 33.0 30.0 34.0 2 31.65609238001555 31.0 31.0 34.0 30.0 34.0 3 31.733512291417853 31.0 31.0 34.0 30.0 34.0 4 35.53005016950976 37.0 35.0 37.0 33.0 37.0 5 35.43478747980559 37.0 35.0 37.0 33.0 37.0 6 35.465414632288194 37.0 35.0 37.0 33.0 37.0 7 35.870570955461396 37.0 35.0 37.0 35.0 37.0 8 35.85742582687822 37.0 35.0 37.0 35.0 37.0 9 37.56738825016189 39.0 37.0 39.0 35.0 39.0 10 36.86276544017639 39.0 37.0 39.0 32.0 39.0 11 36.62037769417438 39.0 35.0 39.0 32.0 39.0 12 36.331450389547534 38.0 35.0 39.0 32.0 39.0 13 36.25119821997952 39.0 35.0 39.0 32.0 39.0 14 37.316339037435554 39.0 36.0 41.0 32.0 41.0 15 37.40796057245674 39.0 36.0 41.0 32.0 41.0 16 37.45090827203123 39.0 36.0 41.0 32.0 41.0 17 37.33974886115885 39.0 36.0 41.0 32.0 41.0 18 37.187259543746514 39.0 36.0 41.0 32.0 41.0 19 37.12341273664705 39.0 35.0 41.0 31.0 41.0 20 36.98697026801139 39.0 35.0 41.0 31.0 41.0 21 36.86410314438915 39.0 35.0 41.0 31.0 41.0 22 36.74780466381499 38.0 35.0 41.0 31.0 41.0 23 36.60088575288996 38.0 35.0 40.0 30.0 41.0 24 36.492847651847356 38.0 35.0 40.0 30.0 41.0 25 36.36845012290298 38.0 35.0 40.0 30.0 41.0 26 36.14158041798215 38.0 35.0 40.0 30.0 41.0 27 36.166045616385865 38.0 35.0 40.0 30.0 41.0 28 36.17739705615445 38.0 35.0 40.0 30.0 41.0 29 36.1586703175311 38.0 35.0 40.0 30.0 41.0 30 36.12194171015513 38.0 35.0 40.0 30.0 41.0 31 36.03667258961162 38.0 35.0 40.0 30.0 41.0 32 35.864867226694926 38.0 35.0 40.0 29.0 41.0 33 35.6695254399075 38.0 34.0 40.0 27.0 41.0 34 35.41818157374067 38.0 34.0 40.0 26.0 41.0 35 35.252690533221894 38.0 34.0 40.0 25.0 41.0 36 35.0291281171085 38.0 34.0 40.0 24.0 41.0 37 34.99920566810147 38.0 34.0 40.0 24.0 41.0 38 34.90122723718145 38.0 34.0 40.0 24.0 41.0 39 34.753524077555475 38.0 33.0 40.0 24.0 41.0 40 34.632421513510366 38.0 33.0 40.0 23.0 41.0 41 34.59519434803165 38.0 33.0 40.0 23.0 41.0 42 34.51098396323442 37.0 33.0 40.0 23.0 41.0 43 34.384882373898414 37.0 33.0 40.0 23.0 41.0 44 34.29393305204947 37.0 33.0 40.0 23.0 41.0 45 34.13461853022831 37.0 33.0 40.0 23.0 41.0 46 34.025146374418256 37.0 33.0 40.0 23.0 41.0 47 33.97599526761927 37.0 33.0 40.0 23.0 41.0 48 33.835202459403924 36.0 33.0 40.0 22.0 41.0 49 33.689036427231805 36.0 32.0 40.0 22.0 41.0 50 33.56825876621994 36.0 32.0 40.0 21.0 41.0 51 33.078077559955815 35.0 31.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 11.0 15 38.0 16 91.0 17 267.0 18 526.0 19 1057.0 20 1719.0 21 2766.0 22 4016.0 23 5805.0 24 8135.0 25 11693.0 26 15559.0 27 18654.0 28 19979.0 29 22119.0 30 25167.0 31 29670.0 32 35862.0 33 44516.0 34 64590.0 35 79159.0 36 77528.0 37 95060.0 38 132830.0 39 195703.0 40 50.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.51747418141241 22.783209011241645 27.200433801567154 15.498883005778794 2 34.50212531397957 24.527938299793632 27.720502725824414 13.249433660402389 3 29.893879947208855 25.484497643892833 31.2836806808175 13.33794172808081 4 25.81522652463549 28.56614689650382 31.0877305411092 14.530896037751493 5 23.410047794356547 32.18343801186232 29.607965277948946 14.798548915832189 6 22.60585676929868 41.115246466959604 26.80763723792089 9.471259525820829 7 88.30786018862301 2.8496236726590736 7.589062643545522 1.253453495172389 8 88.22697053689666 2.5957511646093208 7.707148090802556 1.470130207691463 9 82.55808481985807 5.454785821679771 9.309816328954238 2.6773130295079177 10 36.00777078427111 36.265564535825604 15.644529193097714 12.082135486805576 11 30.042999235917694 26.3524368847849 27.125706103919672 16.47885777537773 12 27.184636792019486 23.55210884475685 30.915083791371924 18.348170571851746 13 24.379827330843156 25.47990418721585 31.8631284352894 18.277140046651592 14 21.68817375366076 27.01792792530367 31.834335304411738 19.459563016623832 15 21.680443302179988 25.50343164824429 34.58615196050972 18.229973089066004 16 25.06335609148373 24.673024309469017 32.677738764517 17.585880834530247 17 24.870767017636634 24.3772505136829 29.93073963615342 20.82124283252705 18 24.699688765301254 24.733523494970726 31.210409445043215 19.356378294684813 19 26.444306018324532 25.943283133947435 28.59942144852976 19.012989399198275 20 28.172902190742725 25.934432327179596 28.10601698010473 17.786648501972945 21 27.453522060915958 25.30087141234228 29.483045663440787 17.76256086330097 22 26.323083576263706 23.690472722709828 29.171138751520882 20.815304949505588 23 23.413408860217753 26.545025958632003 29.867887704548867 20.17367747660138 24 23.144635626849986 25.893091217086763 31.56197693412535 19.4002962219379 25 23.583702863852185 26.806740953691232 29.54981883855008 20.0597373439065 26 22.78197662042587 28.22533481817754 28.780358827391346 20.212329734005248 27 22.31445235913213 27.02341766621031 29.569985233717315 21.092144740940245 28 21.25594068390968 27.63143448050246 31.051655100865588 20.060969734722274 29 22.34571027164134 25.830127249953506 31.01165841711724 20.812504061287914 30 23.246139815858406 26.462903916089868 30.237604949281515 20.053351318770208 31 24.197321454579676 26.870713240582855 28.723556814336966 20.208408490500506 32 24.79828003056329 26.831052663420625 28.322245550508978 20.048421755507107 33 24.393383629816686 26.962918480708602 28.126855588444204 20.5168423010305 34 22.858945028647483 27.591213725696694 29.48091698839536 20.068924257260463 35 22.88516134236489 27.977288157620546 29.482597521325964 19.654952978688602 36 24.410300994651422 28.556175734448907 27.285020625740835 19.748502645158833 37 23.167490874706186 29.08879263792134 27.720502725824414 20.02321376154806 38 22.851774754810243 28.769043238991948 27.86648501972946 20.51269698646835 39 22.942523533062804 28.196877793886 27.811811681720506 21.04878699133069 40 24.37444962546523 27.12223300252976 28.20359992560841 20.2997174463966 41 21.15846977393471 27.563989092220925 29.0783733337516 22.199167800092763 42 22.779287767736907 27.538781098261882 27.42058361547614 22.261347518525074 43 22.36184338777513 27.14990577812036 28.46038535740454 22.027865476699972 44 22.03033025833152 28.069045255631465 28.09604581804982 21.804578667987194 45 22.208242677918022 27.87466361332506 27.513349033245422 22.403744675511497 46 22.589275511050065 28.086970940224564 28.039803982638972 21.283949566086395 47 22.129593736765806 27.806321940813874 28.91580978159794 21.148274540822385 48 22.563283268390073 27.51234071348706 29.34479382101652 20.579582197106348 49 22.689435273714 27.276842032145233 28.930486435858537 21.103236258282227 50 21.57031237746114 28.697340500619557 28.797724334340906 20.934622787578398 51 21.59428798060441 28.200574966333324 28.37568649770215 21.829450555360115 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 580.0 1 936.5 2 1293.0 3 7012.0 4 12731.0 5 8824.5 6 4918.0 7 4975.0 8 5032.0 9 5292.5 10 5553.0 11 5694.5 12 5836.0 13 5863.0 14 5890.0 15 5632.5 16 5375.0 17 5108.5 18 4842.0 19 4852.0 20 4862.0 21 5027.0 22 5192.0 23 5661.0 24 6130.0 25 6600.0 26 8755.0 27 10440.0 28 11927.0 29 13414.0 30 15403.5 31 17393.0 32 19764.5 33 22136.0 34 25848.5 35 29561.0 36 32038.0 37 34515.0 38 36263.5 39 38012.0 40 41626.0 41 45240.0 42 49591.0 43 53942.0 44 55252.5 45 56563.0 46 57989.5 47 59416.0 48 59820.0 49 60224.0 50 58080.5 51 55937.0 52 54712.0 53 53487.0 54 50373.0 55 47259.0 56 45601.0 57 43943.0 58 41486.0 59 39029.0 60 37167.0 61 35305.0 62 31831.5 63 28358.0 64 25098.5 65 21839.0 66 19180.0 67 16521.0 68 13908.5 69 11296.0 70 9766.0 71 8236.0 72 7060.0 73 5884.0 74 4976.5 75 3348.0 76 2627.0 77 1993.5 78 1360.0 79 1021.5 80 683.0 81 510.0 82 337.0 83 236.5 84 136.0 85 93.5 86 51.0 87 40.0 88 29.0 89 24.0 90 19.0 91 12.5 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 892574.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.808173726204636 #Duplication Level Percentage of deduplicated Percentage of total 1 71.49570096866836 21.31156275150844 2 5.900766078466287 3.517821207692366 3 3.13186356838931 2.800653999999592 4 2.3041193702752714 2.747263619003141 5 1.868876683960183 2.785390043416918 6 1.5534523915092404 2.77833472568973 7 1.363132504748845 2.844274335937303 8 1.2305775269194335 2.9345014964782186 9 1.1360999894493429 3.0478559270260743 >10 9.93516458502227 52.51099489712775 >50 0.0685122029669447 1.289985720995792 >100 0.01135560931401299 0.54282509022743 >500 0.0 0.0 >1k 0.0 0.0 >5k 3.785203104670112E-4 0.8885361848971849 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7875 0.8822797885665503 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.015797009547667756 0.0 2 0.0 0.0 0.0 0.05176041426257095 0.0 3 0.0 0.0 0.0 0.08290629124307901 0.0 4 0.0 0.0 0.0 0.13533891867789113 0.0 5 0.0 0.0 0.0 0.23538664581312024 0.0 6 0.0 0.0 0.0 0.48970729597770046 0.0 7 0.0 0.0 0.0 0.6120500933255955 0.0 8 0.0 0.0 0.0 0.8884417426454277 0.0 9 0.0 0.0 0.0 1.0229964126223707 0.0 10 0.0 0.0 0.0 1.1979959084624916 0.0 11 0.0 0.0 0.0 1.3457707708268447 0.0 12 0.0 0.0 0.0 1.464416395727413 0.0 13 0.0 0.0 0.0 1.5380237380878223 0.0 14 0.0 0.0 0.0 1.5848545890872914 0.0 15 0.0 0.0 0.0 1.626979947881072 0.0 16 0.0 0.0 0.0 1.6912883413588118 0.0 17 0.0 0.0 0.0 1.756829125652327 0.0 18 0.0 0.0 0.0 1.8387270971370442 0.0 19 0.0 0.0 0.0 1.8940726483182346 0.0 20 0.0 0.0 0.0 1.9552440469921821 0.0 21 0.0 0.0 0.0 2.0344531657879346 0.0 22 0.0 0.0 0.0 2.119488132076444 0.0 23 0.0 0.0 0.0 2.214718331477278 0.0 24 0.0 0.0 0.0 2.2894460291247563 0.0 25 0.0 0.0 0.0 2.3619330161980967 0.0 26 0.0 0.0 0.0 2.433747790099196 0.0 27 0.0 0.0 0.0 2.511052304906932 0.0 28 0.0 0.0 0.0 2.588468855243375 0.0 29 0.0 0.0 0.0 2.676416745278263 0.0 30 0.0 0.0 0.0 2.7755681881838368 0.0 31 0.0 0.0 0.0 2.86833360595312 0.0 32 1.1203552870686352E-4 0.0 0.0 2.9678211554448146 0.0 33 1.1203552870686352E-4 0.0 0.0 3.066188349649441 0.0 34 1.1203552870686352E-4 0.0 0.0 3.1707174979329444 0.0 35 1.1203552870686352E-4 0.0 0.0 3.281184529237912 0.0 36 1.1203552870686352E-4 0.0 0.0 3.3899710276122765 0.0 37 1.1203552870686352E-4 0.0 0.0 3.4958446022402625 0.0 38 1.1203552870686352E-4 0.0 0.0 3.6254697089541037 0.0 39 1.1203552870686352E-4 0.0 0.0 3.810328331320428 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGAAT 30 2.164954E-6 44.999996 12 ACGGGTA 70 0.0 41.785713 5 CGTTTTT 4480 0.0 41.635044 1 AGGGCGA 1250 0.0 39.059998 6 GGGCGAT 2445 0.0 38.92638 7 TCTAGCG 70 0.0 38.571426 1 GCGATAC 70 0.0 38.571426 9 CGGTAGT 140 0.0 38.571426 12 GGCACCG 445 0.0 37.92135 8 GGCGATT 500 0.0 37.8 8 ACGGGAC 275 0.0 37.636364 5 ATACGAT 30 1.1397176E-4 37.499996 10 TCGACGG 60 1.546141E-10 37.499996 2 ATACCGG 30 1.1397176E-4 37.499996 2 TAGGGCG 525 0.0 37.285717 5 GTAGGGC 345 0.0 37.173912 4 CGGGTAC 85 0.0 37.058823 6 TTAGGGA 1240 0.0 37.01613 4 GCGTAAG 55 2.748493E-9 36.81818 1 GGCGATA 465 0.0 36.774193 8 >>END_MODULE