SRR1547297_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547297_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	619015
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21111	3.4104181643417366	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	845	0.1365071928790094	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	773	0.12487581076387486	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCGAC	30	2.1638716E-6	45.000004	29
TCTAGCG	30	2.1638716E-6	45.000004	1
CCCGTTG	30	2.1638716E-6	45.000004	37
CCGTAGG	30	2.1638716E-6	45.000004	2
TTCGAAG	30	2.1638716E-6	45.000004	1
AGTACGG	60	0.0	45.000004	2
TCACGAC	40	6.8066583E-9	45.0	25
AGGTACG	20	7.030762E-4	45.0	1
CGAGTTA	25	3.8887123E-5	45.0	31
GTCGACA	20	7.030762E-4	45.0	13
CGACGGT	40	6.8066583E-9	45.0	28
TCCGACC	20	7.030762E-4	45.0	18
GGCGTAT	35	1.2107193E-7	45.0	8
GTTAGCG	25	3.8887123E-5	45.0	1
TACGGGT	35	1.2107193E-7	45.0	4
CGACACC	20	7.030762E-4	45.0	15
CGTTCGA	20	7.030762E-4	45.0	14
CGTTCAT	20	7.030762E-4	45.0	32
TTGAGCG	25	3.8887123E-5	45.0	1
TAACCGG	25	3.8887123E-5	45.0	1