##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547297_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 619015 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.275864074376226 31.0 31.0 33.0 30.0 34.0 2 31.6546238782582 31.0 31.0 34.0 30.0 34.0 3 31.567889308013537 31.0 31.0 34.0 30.0 34.0 4 35.43557587457493 37.0 35.0 37.0 33.0 37.0 5 35.369575858420234 37.0 35.0 37.0 33.0 37.0 6 35.42124665799698 37.0 35.0 37.0 33.0 37.0 7 35.92334272998231 37.0 35.0 37.0 35.0 37.0 8 35.942594282852596 37.0 35.0 37.0 35.0 37.0 9 37.689824963853866 39.0 37.0 39.0 35.0 39.0 10 36.96225454956665 39.0 37.0 39.0 32.0 39.0 11 36.59853638441718 39.0 35.0 39.0 32.0 39.0 12 36.11389223201376 38.0 35.0 39.0 32.0 39.0 13 35.83492484027043 38.0 35.0 39.0 31.0 39.0 14 36.970297973393215 39.0 35.0 41.0 31.0 41.0 15 37.20709352762049 39.0 35.0 41.0 32.0 41.0 16 37.33345718601326 39.0 35.0 41.0 32.0 41.0 17 37.2754359748956 39.0 35.0 41.0 32.0 41.0 18 37.04985178065152 39.0 35.0 40.0 32.0 41.0 19 36.8572280154762 38.0 35.0 40.0 32.0 41.0 20 36.55450514123244 38.0 35.0 40.0 31.0 41.0 21 36.40138122662617 38.0 35.0 40.0 31.0 41.0 22 36.27797710879381 37.0 35.0 40.0 31.0 41.0 23 36.21816111079699 37.0 35.0 40.0 31.0 41.0 24 36.01843412518275 37.0 35.0 40.0 31.0 41.0 25 35.864119609379415 37.0 35.0 40.0 30.0 41.0 26 35.56272465126047 36.0 34.0 40.0 30.0 41.0 27 35.4614427760232 36.0 34.0 40.0 30.0 41.0 28 35.36226747332456 36.0 34.0 40.0 29.0 41.0 29 35.313717761282035 36.0 34.0 40.0 29.0 41.0 30 35.21458284532685 36.0 34.0 40.0 29.0 41.0 31 35.029798954791076 35.0 34.0 40.0 28.0 41.0 32 34.698918443010264 35.0 34.0 40.0 25.0 41.0 33 34.364588903338365 35.0 33.0 40.0 24.0 41.0 34 34.01418705524099 35.0 33.0 40.0 23.0 41.0 35 33.73441031315881 35.0 33.0 40.0 21.0 41.0 36 33.403242247764595 35.0 33.0 40.0 20.0 41.0 37 33.2776766314225 35.0 33.0 40.0 18.0 41.0 38 33.22276035314169 35.0 33.0 40.0 18.0 41.0 39 33.08493655242603 35.0 33.0 40.0 18.0 41.0 40 32.967546828429036 35.0 33.0 40.0 18.0 41.0 41 32.95751476135473 35.0 33.0 40.0 18.0 41.0 42 32.85481288821757 35.0 33.0 40.0 18.0 41.0 43 32.728638239784175 35.0 32.0 39.0 17.0 41.0 44 32.61550204760789 35.0 32.0 39.0 16.0 41.0 45 32.477771944137054 35.0 31.0 39.0 17.0 41.0 46 32.4128769092833 35.0 31.0 39.0 15.0 41.0 47 32.38880479471418 35.0 31.0 39.0 15.0 41.0 48 32.25887902554865 35.0 31.0 39.0 15.0 41.0 49 32.12867862652763 35.0 31.0 39.0 15.0 41.0 50 31.968960364449973 35.0 31.0 39.0 14.0 40.0 51 31.58303756774876 35.0 30.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 10.0 15 25.0 16 71.0 17 190.0 18 480.0 19 862.0 20 1580.0 21 2477.0 22 3757.0 23 5680.0 24 8259.0 25 11760.0 26 15654.0 27 16658.0 28 16725.0 29 17071.0 30 18739.0 31 22018.0 32 26461.0 33 34017.0 34 52644.0 35 79926.0 36 65766.0 37 54320.0 38 66596.0 39 97232.0 40 34.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.030176974709818 24.011696000904664 27.393035709958564 20.565091314426954 2 36.42173452985792 24.842370540293853 26.732470134003215 12.003424795845012 3 24.979200827120508 24.14174131483082 38.27677843024805 12.60227942780062 4 21.85439771249485 27.17866287569768 37.98114746815505 12.985791943652417 5 20.366226989652915 30.526562361170566 36.66276261479931 12.444448034377196 6 19.653966382074746 37.79262214970558 33.37657407332617 9.1768373948935 7 81.74987682043246 3.2099383698294868 13.770587142476353 1.269597667261698 8 82.1928386226505 2.8199639750248378 13.379966559776419 1.607230842548242 9 78.22718350928491 4.877264686639258 14.798025895979904 2.0975259080959265 10 41.90835440175117 27.31032365936205 20.191271617004432 10.590050321882345 11 31.873217934945036 25.33670428018707 28.872482896214148 13.917594888653747 12 28.77086984968054 24.87144899558169 31.378884195051814 14.978796959685953 13 18.478873694498517 36.65840084650615 31.126386274969104 13.736339184026235 14 15.052139285800829 39.24573717922829 31.53057680347003 14.171546731500854 15 13.578507790602812 29.91866109868097 43.10945615211263 13.393374958603587 16 14.998667237465973 28.196731904719595 42.08702535479754 14.717575503016889 17 15.395265058197296 28.61465392599533 31.66385305687261 24.32622795893476 18 18.485174026477548 30.923321728875713 34.31710055491386 16.274403689732882 19 21.536473268014507 33.1410385854947 29.028698819899358 16.29378932659144 20 23.09701703512839 31.854801579929404 28.82353416314629 16.22464722179592 21 18.619096467775417 33.946834890915405 31.32977391501014 16.104294726299038 22 19.59387090781322 31.8221690912175 29.79572385160295 18.788236149366334 23 15.945170957085047 36.01705936043553 28.670710725911324 19.367058956568094 24 16.962270704264032 32.61471854478486 36.24274048286391 14.180270268087202 25 15.48670064538016 34.13923733673659 33.82874405305203 16.545317964831224 26 15.181053770910236 39.18321850035944 29.500900624379057 16.134827104351267 27 15.926754602069417 37.59682721743415 30.978732340896425 15.49768583960001 28 13.826320848444706 36.12868831934606 36.04064521861344 14.004345613595792 29 13.963797323166643 33.15800101774594 35.71690508307553 17.16129657601189 30 15.427412905987739 35.837742219493876 33.02682487500303 15.70801999951536 31 20.92146393867677 34.65667229388625 28.01628393496119 16.405579832475787 32 21.425652043973088 34.52840399667213 28.859559138308445 15.186384821046339 33 19.417946253321812 34.93841021623062 28.03389255510771 17.609750975339857 34 16.379247675742914 35.3862184276633 29.76115279920519 18.473381097388593 35 16.513654757962247 34.789463906367374 30.294580906763162 18.402300428907214 36 22.275712220220832 34.040370588757945 27.755547119213592 15.92837007180763 37 16.850641745353506 37.97807807565245 29.411080506934407 15.760199672059644 38 17.15515779100668 38.23299920034248 26.709692010694408 17.902150997956433 39 16.97164042874567 37.806353642480396 28.268943402017722 16.95306252675622 40 19.191134302076687 35.84226553476087 26.61599476587805 18.350605397284394 41 15.390257102008837 33.87543112848638 28.809641123397654 21.92467064610712 42 18.43751766920026 35.86181271859325 25.82990719126354 19.87076242094295 43 18.68581536796362 35.51981777501353 27.132298894210965 18.662067962811886 44 17.044821207886724 38.432348166037976 27.272037026566398 17.2507935995089 45 15.179922942093487 40.788995420143294 24.97710071646083 19.05398092130239 46 18.84849317060168 37.96903144511845 25.994038916665996 17.188436467613872 47 18.05513598216521 36.31107485279032 27.096597012996455 18.537192152048014 48 19.625211020734554 33.47576391525246 28.271043512677394 18.62798155133559 49 17.674692858816023 33.1494390281334 28.898330412025558 20.277537701025018 50 16.35453098874825 38.22831433810166 27.436007204995033 17.981147468155054 51 15.589121426782873 38.88080256536595 26.03167936156636 19.498396646284824 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 950.0 1 1047.5 2 1145.0 3 12983.5 4 24822.0 5 15405.0 6 5988.0 7 6940.0 8 7892.0 9 10736.0 10 13580.0 11 15961.0 12 18342.0 13 18418.0 14 18494.0 15 17072.0 16 15650.0 17 13661.0 18 11672.0 19 10272.0 20 8872.0 21 8014.0 22 7156.0 23 6832.0 24 6508.0 25 6583.5 26 7092.5 27 7526.0 28 7793.0 29 8060.0 30 9238.5 31 10417.0 32 11148.0 33 11879.0 34 13710.5 35 15542.0 36 16158.5 37 16775.0 38 19682.0 39 22589.0 40 28570.5 41 34552.0 42 39073.5 43 43595.0 44 45691.0 45 47787.0 46 47813.5 47 47840.0 48 47144.0 49 46448.0 50 43283.5 51 40119.0 52 36745.0 53 33371.0 54 29192.0 55 25013.0 56 21263.0 57 17513.0 58 15178.0 59 12843.0 60 11654.5 61 10466.0 62 8768.5 63 7071.0 64 5611.0 65 4151.0 66 3495.0 67 2839.0 68 2306.0 69 1773.0 70 1507.5 71 1242.0 72 980.0 73 718.0 74 623.5 75 432.0 76 335.0 77 234.5 78 134.0 79 111.0 80 88.0 81 58.0 82 28.0 83 24.5 84 21.0 85 14.0 86 7.0 87 6.5 88 6.0 89 5.5 90 5.0 91 3.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 619015.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.11288910632406 #Duplication Level Percentage of deduplicated Percentage of total 1 76.15256213879859 25.97783907403289 2 8.650398013019666 5.901801362874118 3 3.9897780339267905 4.083085668905767 4 2.2520285643707916 3.0729280272262 5 1.4034035703013785 2.3937075182555096 6 0.9263626677274064 1.8960544173854121 7 0.7315148524503143 1.7467859528886607 8 0.5143594615548686 1.4037029818247828 9 0.42186546923234597 1.2951944972739347 >10 4.372934279714054 35.00509042506167 >50 0.5499724878354411 11.777869521668949 >100 0.03338948321619962 1.7475694384339868 >500 9.539852347485605E-4 0.26327442750336977 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.7699261737428026E-4 3.435096686664795 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21111 3.4104181643417366 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 845 0.1365071928790094 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 773 0.12487581076387486 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.029563096209300258 0.0 2 0.0 0.0 0.0 0.1287529381355864 0.0 3 0.0 0.0 0.0 0.24878233968482186 0.0 4 0.0 0.0 0.0 0.39417461612400345 0.0 5 0.0 0.0 0.0 0.7382696703634 0.0 6 0.0 0.0 0.0 1.4613539251875964 0.0 7 0.0 0.0 0.0 1.9041541804318152 0.0 8 0.0 0.0 0.0 2.6201303684078736 0.0 9 0.0 0.0 0.0 3.0734311769504776 0.0 10 0.0 0.0 0.0 3.558879833283523 0.0 11 0.0 0.0 0.0 4.019450255648086 0.0 12 0.0 0.0 0.0 4.3511061929032415 0.0 13 0.0 0.0 0.0 4.579210519938935 0.0 14 0.0 0.0 0.0 4.687931633320678 0.0 15 0.0 0.0 0.0 4.787121475246965 0.0 16 0.0 0.0 0.0 4.933967674450538 0.0 17 0.0 0.0 0.0 5.099553322617384 0.0 18 0.0 0.0 0.0 5.295671348836458 0.0 19 0.0 0.0 0.0 5.414893015516586 0.0 20 0.0 0.0 0.0 5.534276229170537 0.0 21 0.0 0.0 0.0 5.673852814552151 0.0 22 0.0 0.0 0.0 5.8434771370645295 0.0 23 0.0 0.0 0.0 6.0239251068229365 0.0 24 0.0 0.0 0.0 6.179171748665218 0.0 25 0.0 0.0 0.0 6.308086233774626 0.0 26 0.0 0.0 0.0 6.424723148873614 0.0 27 0.0 0.0 0.0 6.548306583846918 0.0 28 0.0 0.0 0.0 6.66914372026526 0.0 29 0.0 0.0 0.0 6.812758979992407 0.0 30 0.0 0.0 0.0 7.003545956075378 0.0 31 0.0 0.0 0.0 7.152492265938628 0.0 32 0.0 0.0 0.0 7.297238354482524 0.0 33 0.0 0.0 0.0 7.444569194607562 0.0 34 0.0 0.0 0.0 7.594646333287562 0.0 35 0.0 0.0 0.0 7.753447008553913 0.0 36 0.0 0.0 0.0 7.919840391589864 0.0 37 0.0 0.0 0.0 8.079771895672964 0.0 38 0.0 0.0 0.0 8.2490731242377 0.0 39 0.0 0.0 0.0 8.40658142371348 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGGCGAC 30 2.1638716E-6 45.000004 29 TCTAGCG 30 2.1638716E-6 45.000004 1 CCCGTTG 30 2.1638716E-6 45.000004 37 CCGTAGG 30 2.1638716E-6 45.000004 2 TTCGAAG 30 2.1638716E-6 45.000004 1 AGTACGG 60 0.0 45.000004 2 TCACGAC 40 6.8066583E-9 45.0 25 AGGTACG 20 7.030762E-4 45.0 1 CGAGTTA 25 3.8887123E-5 45.0 31 GTCGACA 20 7.030762E-4 45.0 13 CGACGGT 40 6.8066583E-9 45.0 28 TCCGACC 20 7.030762E-4 45.0 18 GGCGTAT 35 1.2107193E-7 45.0 8 GTTAGCG 25 3.8887123E-5 45.0 1 TACGGGT 35 1.2107193E-7 45.0 4 CGACACC 20 7.030762E-4 45.0 15 CGTTCGA 20 7.030762E-4 45.0 14 CGTTCAT 20 7.030762E-4 45.0 32 TTGAGCG 25 3.8887123E-5 45.0 1 TAACCGG 25 3.8887123E-5 45.0 1 >>END_MODULE