##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547287_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1626919 Sequences flagged as poor quality 0 Sequence length 86 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02383585169268 33.0 31.0 34.0 31.0 34.0 2 32.435617261830494 34.0 31.0 34.0 31.0 34.0 3 32.54031147217532 34.0 31.0 34.0 31.0 34.0 4 36.0803654023341 37.0 35.0 37.0 35.0 37.0 5 36.05164916016101 37.0 35.0 37.0 35.0 37.0 6 36.10876140729809 37.0 35.0 37.0 35.0 37.0 7 36.338007608246016 37.0 37.0 37.0 35.0 37.0 8 36.327895242479805 37.0 37.0 37.0 35.0 37.0 9 38.0956513508048 39.0 39.0 39.0 37.0 39.0 10-11 37.6604529789129 39.0 37.5 39.0 35.0 39.0 12-13 36.887027258271615 39.0 35.0 39.0 33.5 39.0 14-15 37.959005949282044 40.0 35.0 41.0 33.0 41.0 16-17 38.12675031762491 40.0 35.0 41.0 34.0 41.0 18-19 37.9862845046373 40.0 36.0 41.0 34.0 41.0 20-21 37.815836867108935 40.0 35.0 41.0 34.0 41.0 22-23 37.629415170638495 39.5 35.0 41.0 34.0 41.0 24-25 37.58832492582606 39.0 35.0 41.0 34.0 41.0 26-27 37.573280230915 39.0 35.0 41.0 34.0 41.0 28-29 37.494918616108116 39.0 35.0 41.0 33.5 41.0 30-31 37.32719084355152 39.0 35.0 41.0 33.0 41.0 32-33 36.96968564507514 39.0 35.0 41.0 32.5 41.0 34-35 36.623350025416144 39.0 35.0 41.0 31.5 41.0 36-37 36.424235318414745 39.0 35.0 41.0 31.0 41.0 38-39 36.33104444658892 39.0 35.0 41.0 31.0 41.0 40-41 36.202487032237 39.0 35.0 41.0 30.0 41.0 42-43 36.17938600508077 39.0 35.0 41.0 30.5 41.0 44-45 36.02656708785133 38.0 35.0 41.0 30.0 41.0 46-47 35.87865622074609 38.0 35.0 40.5 30.0 41.0 48-49 35.79256619413751 38.0 35.0 40.0 30.0 41.0 50-51 35.546585294043524 37.5 35.0 40.0 29.0 41.0 52-53 35.33823195869002 37.0 35.0 40.0 28.0 41.0 54-55 35.12119226587187 36.5 35.0 40.0 28.0 41.0 56-57 34.81064853259443 36.0 34.0 40.0 27.5 41.0 58-59 34.53979669547162 36.0 34.0 39.0 26.5 41.0 60-61 34.13024926256317 35.0 34.0 39.0 26.0 40.5 62-63 33.69537235719787 35.0 33.5 38.5 25.5 40.0 64-65 33.28559780788103 35.0 33.0 38.0 24.0 40.0 66-67 32.93236510238063 35.0 33.0 37.0 22.5 40.0 68-69 32.43637667271696 35.0 32.5 36.5 20.5 39.5 70-71 32.09098824219276 35.0 32.0 36.0 19.5 39.0 72-73 31.808174223793564 35.0 32.0 36.0 18.0 38.5 74-75 31.494930909283127 35.0 32.0 35.0 17.5 37.5 76-77 29.591490418392066 33.0 29.0 34.5 13.5 35.5 78-79 30.538663879394118 34.0 30.5 35.0 15.0 36.0 80-81 30.640831227614896 34.0 31.0 35.0 11.5 36.0 82-83 30.400553131409737 34.0 31.0 35.0 10.0 36.0 84-85 30.138495831691685 34.0 31.0 35.0 10.0 35.5 86 29.772529548182792 34.0 30.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 6.0 10 7.0 11 13.0 12 21.0 13 55.0 14 202.0 15 721.0 16 1693.0 17 4203.0 18 9083.0 19 14328.0 20 16101.0 21 15282.0 22 12746.0 23 11425.0 24 11364.0 25 12697.0 26 15308.0 27 18549.0 28 23271.0 29 30023.0 30 38873.0 31 49102.0 32 58568.0 33 73965.0 34 192313.0 35 173047.0 36 139596.0 37 243537.0 38 328671.0 39 131901.0 40 245.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.04840683525117 22.98749968498739 29.3211278496348 13.642965630126639 2 32.41157058218633 23.989454914473306 30.292104278086367 13.306870225253991 3 29.54406457850698 23.77450874935999 33.028319172620144 13.653107499512885 4 26.016230678970498 26.40346569189984 33.08781813968612 14.492485489443544 5 24.860426364189 30.345456657645524 30.974191093717636 13.819925884447843 6 21.970116520859367 40.10722107246888 27.615326884743496 10.307335521928259 7 85.93722244315789 3.943527612622386 8.033282542031902 2.0859674021878165 8 86.03648983139296 3.6446805280410395 7.8861947029938175 2.432634937572184 9 81.32138108904007 6.064469097723981 9.35221728924427 3.2619325239916677 10-11 41.34320762127678 24.713430723963516 20.66147730772091 13.281884347038789 12-13 30.05512259676112 25.24686232074246 27.90458529281421 16.793429789682214 14-15 17.904763543851907 30.649466875732596 35.1046671653598 16.341102415055698 16-17 22.502165135449275 24.862915732129256 32.689888064494916 19.945031067926553 18-19 24.00946205680799 27.216812883739138 30.320624444117993 18.453100615334876 20-21 26.174935568396464 27.693480744892646 29.042503037950873 17.089080648760017 22-23 21.525964107616915 25.103800496521337 31.076623974518707 22.29361142134304 24-25 20.587718257639132 26.12594726596714 33.62957836253679 19.65675611385693 26-27 18.78910382139492 32.14659119476753 29.41440231505072 19.64990266878683 28-29 17.952245932342052 28.416596032131903 33.42984500150284 20.201313034023205 30-31 23.104377046429477 28.116980624112202 29.563180465653176 19.215461863805146 32-33 25.885369830950406 27.510158772501885 28.103949858597755 18.500521537949954 34-35 20.35559238044426 28.524622307564172 29.71779787438711 21.401987437604454 36-37 23.621120658127417 29.94073460325929 28.05726652648349 18.380878212129797 38-39 21.06257287547813 30.790100797888524 27.240477245640378 20.90684908099297 40-41 21.328689381585683 26.77305999868463 28.40079930223939 23.4974513174903 42-43 21.525441647678832 26.66346634343812 27.98055711439844 23.830534894484607 44-45 20.06885407325134 30.662651305934713 27.238541070575735 22.02995355023821 46-47 21.371008636570103 29.38409963864212 27.747539982015084 21.49735174277269 48-49 21.980442787870818 25.83653519320876 30.824798284364498 21.35822373455593 50-51 19.45797547388653 29.75461593355293 28.458485025990843 22.328923566569696 52-53 21.82090810913143 26.27199018512907 30.31229581804626 21.59480588769324 54-55 22.064128576776103 26.608761714627466 30.269638500748965 21.057471207847474 56-57 22.733707086830997 25.63465052654742 28.62345943467376 23.008182951947823 58-59 23.40048889957029 28.437801759030414 27.12907034707936 21.03263899431994 60-61 24.353609491314565 29.163191283647187 26.175734624772346 20.307464600265902 62-63 22.68653202771619 26.85487107840034 29.304532063366402 21.15406483051707 64-65 20.528372955260835 30.298250865593186 28.761050796013816 20.412325383132167 66-67 19.674366087063955 29.60792762270279 26.395628792828653 24.322077497404603 68-69 19.045785315679513 31.106342725114157 26.340186573517183 23.507685385689143 70-71 19.81039006858977 30.17654843295825 28.141105980076453 21.87195551837553 72-73 21.906437874288763 30.853656512708994 26.416404258601688 20.823501354400555 74-75 20.934723855336376 31.881611807348737 25.40292417754049 21.780740159774396 76-77 24.04016426140453 29.012630622667757 25.69504074880188 21.252164367125836 78-79 19.544181363669612 30.139576709104755 28.43076391633511 21.885478010890523 80-81 17.65011042344456 29.768998948318874 29.183813084732552 23.39707754350401 82-83 19.20353748404192 29.141524562685667 29.53690380406154 22.11803414921087 84-85 17.66483150052338 28.84621176592074 28.14952680496079 25.33942992859509 86 18.953678701889892 28.774696220278944 29.6885708507922 22.58305422703896 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 458.0 1 695.5 2 3421.5 3 3790.5 4 1956.5 5 2702.0 6 3563.0 7 3964.0 8 4183.5 9 4207.5 10 3861.5 11 3663.0 12 3623.5 13 3569.0 14 3506.0 15 3658.5 16 3939.5 17 4199.5 18 4582.5 19 5061.5 20 5264.5 21 5240.0 22 5635.5 23 6557.0 24 7417.0 25 8317.0 26 10042.0 27 11768.0 28 13257.0 29 14179.0 30 16597.0 31 19331.0 32 21385.0 33 24603.5 34 30037.5 35 33878.5 36 33766.0 37 36597.0 38 43424.0 39 49928.5 40 59059.0 41 71618.5 42 81118.5 43 84681.0 44 87350.5 45 88533.5 46 90662.0 47 93567.0 48 95326.0 49 88748.5 50 79702.0 51 72068.0 52 60105.5 53 53454.5 54 49170.0 55 46808.0 56 43226.5 57 40045.0 58 36467.5 59 27751.0 60 19459.0 61 15310.0 62 12629.5 63 9134.5 64 7324.0 65 6263.5 66 4319.5 67 3114.0 68 2178.0 69 1513.0 70 1085.0 71 708.0 72 583.0 73 411.0 74 403.5 75 272.5 76 84.0 77 50.5 78 38.5 79 42.0 80 27.0 81 16.5 82 16.0 83 9.0 84 5.0 85 4.0 86 5.0 87 4.5 88 2.0 89 1.0 90 1.0 91 0.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1626919.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.897052780856274 #Duplication Level Percentage of deduplicated Percentage of total 1 78.17852228858784 17.900577511711443 2 9.174823412462471 4.201528318603782 3 3.1898153445991633 2.1911211091941687 4 1.4857799056280272 1.3607992367960235 5 0.9573025395113075 1.095970338721908 6 0.6242227434079708 0.8575716661693927 7 0.4548769801438868 0.7290739556205762 8 0.36807512931352915 0.67422685305699 9 0.2837844450767642 0.584804467557781 >10 3.232108326688669 17.111013000099227 >50 1.0566960805060717 17.356313941471566 >100 0.9896687461993228 34.56152844102197 >500 0.0029727897890533513 0.4269727822488925 >1k 0.0010810144687466734 0.2933736174843477 >5k 0.0 0.0 >10k+ 2.7025361718666834E-4 0.6551247602418877 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10587 0.6507392193465071 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07726260496066491 0.0 2 0.0 0.0 0.0 0.23670508488744677 0.0 3 0.0 0.0 0.0 0.34427036625670976 0.0 4 0.0 0.0 0.0 0.543112472102176 0.0 5 0.0 0.0 0.0 1.0144328021247524 0.0 6 0.0 0.0 0.0 1.3869774709128113 0.0 7 0.0 0.0 0.0 1.6407700690692038 0.0 8 0.0 0.0 0.0 2.1814239061686536 0.0 9 0.0 0.0 0.0 2.337301365341483 0.0 10 0.0 0.0 0.0 2.715992621636357 0.0 11 0.0 0.0 0.0 3.295984618779423 0.0 12 0.0 0.0 0.0 3.718992770998433 0.0 13 0.0 0.0 0.0 3.8822461351794404 0.0 14 0.0 0.0 0.0 3.938610342616934 0.0 15 0.0 0.0 0.0 4.038615321352815 0.0 16 0.0 0.0 0.0 4.276488257866556 0.0 17 0.0 0.0 0.0 4.590210084214395 0.0 18 0.0 0.0 0.0 4.955010052743868 0.0 19 0.0 0.0 0.0 5.190117024879542 0.0 20 0.0 0.0 0.0 5.426699178016853 0.0 21 0.0 0.0 0.0 5.756463597757479 0.0 22 0.0 0.0 0.0 6.118743465409157 0.0 23 0.0 0.0 0.0 6.541014027127349 0.0 24 0.0 0.0 0.0 6.826707414444112 0.0 25 0.0 0.0 0.0 7.078717502223528 0.0 26 0.0 0.0 0.0 7.3164060411120655 0.0 27 0.0 0.0 0.0 7.561839280259189 0.0 28 0.0 0.0 0.0 7.836591741813821 0.0 29 0.0 0.0 0.0 8.142200072652665 0.0 30 0.0 0.0 0.0 8.459425453879389 0.0 31 0.0 0.0 0.0 8.76079263933853 0.0 32 0.0 0.0 0.0 9.052140887161562 0.0 33 0.0 0.0 0.0 9.339493853105164 0.0 34 0.0 0.0 0.0 9.625986296797812 0.0 35 0.0 0.0 0.0 9.944686859026172 0.0 36 0.0 0.0 0.0 10.250848382740628 0.0 37 0.0 0.0 0.0 10.567766434592011 0.0 38 0.0 0.0 0.0 10.9277105989911 0.0 39 0.0 0.0 0.0 11.372231807483962 0.0 40 0.0 0.0 0.0 11.709802393358244 0.0 41 0.0 0.0 0.0 12.044176753728982 0.0 42 0.0 0.0 0.0 12.370560550340858 0.0 43 0.0 0.0 0.0 12.680164163059132 0.0 44 0.0 0.0 0.0 12.97765899838898 0.0 45 0.0 0.0 0.0 13.290151507235455 0.0 46 0.0 0.0 0.0 13.627906490734942 0.0 47 0.0 0.0 0.0 13.961973521730338 0.0 48 0.0 0.0 0.0 14.293274588347668 0.0 49 0.0 0.0 0.0 14.629431459095382 0.0 50 0.0 0.0 0.0 14.975976062729613 0.0 51 0.0 0.0 0.0 15.325163698991775 0.0 52 0.0 0.0 0.0 15.714058290547962 0.0 53 0.0 0.0 0.0 16.062139541058897 0.0 54 6.146587506815029E-5 0.0 0.0 16.402783420686585 0.0 55 6.146587506815029E-5 0.0 0.0 16.738387098558686 0.0 56 6.146587506815029E-5 0.0 0.0 17.0855463609436 0.0 57 6.146587506815029E-5 0.0 0.0 17.430185522450717 0.0 58 6.146587506815029E-5 0.0 0.0 17.763330565320093 0.0 59 6.146587506815029E-5 0.0 0.0 18.105941352949962 0.0 60 6.146587506815029E-5 0.0 0.0 18.467053368975346 0.0 61 6.146587506815029E-5 0.0 0.0 18.841257616390244 0.0 62 6.146587506815029E-5 0.0 0.0 19.233778694575452 0.0 63 6.146587506815029E-5 0.0 0.0 19.65223837203942 0.0 64 6.146587506815029E-5 0.0 0.0 20.012612797563985 0.0 65 6.146587506815029E-5 0.0 0.0 20.355838243944536 0.0 66 6.146587506815029E-5 0.0 0.0 20.692240978192523 0.0 67 6.146587506815029E-5 0.0 0.0 21.037925059575798 0.0 68 6.146587506815029E-5 0.0 0.0 21.436469793517684 0.0 69 6.146587506815029E-5 0.0 0.0 21.94178075245295 0.0 70 6.146587506815029E-5 0.0 0.0 22.307072447982968 0.0 71 1.2293175013630058E-4 0.0 0.0 22.65521516436897 0.0 72 1.2293175013630058E-4 0.0 0.0 23.002312960878815 0.0 73 1.2293175013630058E-4 0.0 0.0 23.351131801890567 0.0 74 1.8439762520445086E-4 0.0 0.0 23.731789966187623 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCACG 40 4.1836756E-11 80.0 1 TAACGCG 20 4.091412E-5 80.0 1 TACGCGG 85 0.0 80.0 2 AGTACGG 125 0.0 73.6 2 CGTTTTT 6195 0.0 71.92897 1 TAAGGGA 1775 0.0 66.478874 4 TAGCGGG 1045 0.0 65.83732 3 TTAGCGG 250 0.0 65.6 2 ATATGCG 165 0.0 65.454544 1 TAGGGTA 960 0.0 64.166664 5 ACGTTAG 75 0.0 64.0 1 CGTTAGG 350 0.0 64.0 2 GTAAGGG 2285 0.0 63.01969 3 AGGGACC 1365 0.0 62.71062 6 TTGCGGG 1120 0.0 62.142857 3 GGGCGAT 985 0.0 62.131977 7 TAACGGG 495 0.0 61.414143 3 CGTAAGG 190 0.0 61.05263 2 GTACGAG 105 0.0 60.952385 1 TAGTAGG 1065 0.0 60.845074 2 >>END_MODULE