##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547286_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1758761 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.91008215442576 31.0 31.0 34.0 30.0 34.0 2 32.31856119165708 33.0 31.0 34.0 31.0 34.0 3 32.39922536376461 34.0 31.0 34.0 30.0 34.0 4 35.96169462479553 37.0 35.0 37.0 35.0 37.0 5 35.91994023065101 37.0 35.0 37.0 35.0 37.0 6 35.9790807278533 37.0 35.0 37.0 35.0 37.0 7 36.27488100998373 37.0 36.0 37.0 35.0 37.0 8 36.267474659717834 37.0 37.0 37.0 35.0 37.0 9 38.03450099246003 39.0 39.0 39.0 35.0 39.0 10-11 37.512451379124286 39.0 37.0 39.0 35.0 39.0 12-13 36.51960954330918 39.0 35.0 39.0 33.0 39.0 14-15 37.54806252810928 40.0 35.0 41.0 33.0 41.0 16-17 37.77357753554918 40.0 35.0 41.0 34.0 41.0 18-19 37.65954441791693 39.0 35.5 41.0 34.0 41.0 20-21 37.40258881110054 39.0 35.0 41.0 33.5 41.0 22-23 37.19524853007316 39.0 35.0 41.0 33.0 41.0 24-25 37.14083806725303 38.0 35.0 41.0 33.0 41.0 26-27 37.07759468171059 38.0 35.0 41.0 33.0 41.0 28-29 37.02267874941507 38.0 35.0 41.0 33.0 41.0 30-31 36.85374590407679 38.0 35.0 41.0 33.0 41.0 32-33 36.462195261323174 38.0 35.0 41.0 31.5 41.0 34-35 36.11372352468584 38.0 35.0 41.0 31.0 41.0 36-37 35.880741897278824 38.0 35.0 41.0 30.0 41.0 38-39 35.80517477929065 38.0 35.0 41.0 30.0 41.0 40-41 35.652487745634566 38.0 35.0 40.0 29.5 41.0 42-43 35.60461626110654 38.0 35.0 40.0 30.0 41.0 44-45 35.454874482661374 37.0 35.0 40.0 29.0 41.0 46-47 35.29576957869773 37.0 35.0 40.0 29.0 41.0 48-49 35.222278922491455 37.0 35.0 40.0 28.0 41.0 50-51 35.001614488836175 36.0 35.0 40.0 27.5 41.0 52-53 34.795317555938524 36.0 34.0 40.0 27.0 41.0 54-55 34.619406218354854 36.0 34.0 40.0 26.0 41.0 56-57 34.327305415573804 35.5 34.0 40.0 25.5 41.0 58-59 33.99604693303979 35.0 34.0 39.0 24.5 41.0 60-61 33.568005260521474 35.0 33.5 39.0 22.5 40.5 62-63 32.94350056659205 35.0 32.5 38.0 21.0 40.0 64-65 32.31249385220619 35.0 32.0 37.5 18.0 40.0 66-67 31.809686478151377 35.0 32.0 37.0 14.0 39.5 68-69 31.21056328858782 35.0 31.0 36.0 11.0 39.0 70-71 30.65454572849864 35.0 30.0 36.0 10.5 39.0 72-73 30.250262542778692 35.0 30.0 35.0 10.0 37.5 74-75 29.8871591990043 34.5 29.0 35.0 8.0 37.0 76-77 28.02105402610133 32.0 25.5 34.5 8.0 35.5 78-79 28.755358175442826 33.5 26.5 35.0 7.5 36.0 80-81 28.872205205823875 34.0 27.0 35.0 7.0 36.0 82-83 28.565013097288375 34.0 25.5 35.0 7.0 36.0 84-85 28.264990808870564 34.0 25.0 35.0 7.0 35.0 86 27.876706954498083 34.0 24.0 35.0 7.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 3.0 9 7.0 10 5.0 11 7.0 12 26.0 13 46.0 14 274.0 15 867.0 16 2319.0 17 5805.0 18 12708.0 19 18432.0 20 19156.0 21 18400.0 22 15231.0 23 14048.0 24 14891.0 25 17910.0 26 21760.0 27 27465.0 28 34738.0 29 44649.0 30 57794.0 31 71232.0 32 81624.0 33 95633.0 34 231373.0 35 225268.0 36 131598.0 37 199414.0 38 274680.0 39 121161.0 40 235.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.077629080926858 25.671310655626318 31.14425439272306 14.106805870723765 2 30.908406543015225 25.581986409750957 30.407826873577477 13.10178017365634 3 27.54711981900895 23.890568417198242 35.01999418909107 13.542317574701737 4 24.649511786990956 26.832412135588633 34.41155449774017 14.106521579680239 5 23.83513166371099 30.101474845075593 32.51459408071932 13.548799410494091 6 21.55398033047128 38.690873859495404 28.60127100839739 11.153874801635924 7 84.38184608369187 3.648534394383319 9.60346516667131 2.3661543552534994 8 84.27552123341376 3.356794925518589 9.2210368549223 3.14664698614536 9 80.24131760938525 4.986351187000395 11.01104698136927 3.761284222245092 10-11 44.628775598276285 22.19741624928003 20.091558773477466 13.082249378966216 12-13 28.937047159904044 29.319589188070466 26.80494962078418 14.938414031241312 14-15 14.268624332697849 34.91759255521358 36.36616913838776 14.447613973700804 16-17 15.123402213262633 25.46423305952315 36.40022720540198 23.01213752181223 18-19 21.494591931479036 28.427682897221395 30.61041267119296 19.46731250010661 20-21 23.54259617992439 29.356433307311224 29.01008152898546 18.09088898377892 22-23 18.325798673043124 29.144863912720375 27.715931840653734 24.813405573582767 24-25 16.860079339944427 28.45793146425239 35.094734304433636 19.58725489136955 26-27 15.730761598648138 36.00833200190362 30.026450438689512 18.234455960758737 28-29 14.524571559182856 28.35510339380962 37.64735515513478 19.472969891872744 30-31 20.363966451382538 30.504997552254114 30.779253121942098 18.351782874421254 32-33 23.479341422740212 28.93363566738175 28.252701759932137 19.3343211499459 34-35 17.24128520020628 29.16931294246347 30.646688208346674 22.942713648983574 36-37 21.433355640703883 28.936023712147357 30.61390945102831 19.01671119612045 38-39 18.033462192986995 31.80633980398701 28.339040949850492 21.8211570531755 40-41 19.24820939286236 27.981715537244682 28.938809764373897 23.831265305519057 42-43 21.094679720553273 26.128308508091774 28.039511906393194 24.737499864961755 44-45 17.035373197381563 33.52249111732635 26.895382601729285 22.546753083562805 46-47 20.40248788778009 30.794860700231585 27.695320739998213 21.10733067199011 48-49 19.778696480078874 25.238847120217017 32.49958351362124 22.482872886082873 50-51 17.301952908894386 30.921370214599936 28.593765724848346 23.182911151657333 52-53 21.232447160245197 25.722198752417185 31.537229902186827 21.508124185150795 54-55 20.674440700015523 26.7207141845879 31.87161302758021 20.73323208781637 56-57 21.85001259409323 24.059693158990903 30.59653926826897 23.4937549786469 58-59 22.52594297917682 28.301542961209623 28.639508153751418 20.53300590586214 60-61 22.74589895955164 31.668629222503796 25.806206755778643 19.779265062165923 62-63 20.893287945320598 28.781340955365735 30.473640250153377 19.85173084916029 64-65 16.46275417751474 35.100050546947536 29.290420927004863 19.14677434853286 66-67 15.19925106367494 32.35561852918048 25.128030471451208 27.317099935693367 68-69 15.638139576667893 35.69882434281861 24.035329416560863 24.627706663952633 70-71 16.986190846851844 33.115727492251644 27.576686087535485 22.32139557336102 72-73 20.01050739696866 33.277460666912674 26.211776358470534 20.500255577648126 74-75 19.715782872146924 35.07292918139531 23.421772486426523 21.78951546003124 76-77 24.674898977177683 31.190082108939194 24.915608203729786 19.21941071015334 78-79 16.989687626687196 32.753625990114635 29.70460454831555 20.552081834882625 80-81 14.258787862591904 31.74709355051653 30.753809073546662 23.240309513344908 82-83 16.446009435051153 29.695620951340175 31.25916483251562 22.599204781093054 84-85 13.90521509176062 30.306732978500207 29.278907139742127 26.50914478999705 86 16.119870749919972 29.361180967738083 31.44440887647611 23.074539405865835 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1114.0 1 1303.0 2 5566.5 3 5983.0 4 2830.5 5 4775.0 6 7738.0 7 9262.0 8 9648.0 9 9446.0 10 7788.5 11 6116.5 12 5358.5 13 5271.0 14 5339.0 15 5424.0 16 5510.0 17 5728.0 18 6280.5 19 6525.0 20 6620.0 21 6806.0 22 6857.5 23 6976.0 24 7535.5 25 8990.5 26 10334.5 27 11601.5 28 14958.0 29 17429.0 30 19044.0 31 21283.0 32 22604.5 33 26918.5 34 31262.0 35 34987.5 36 37986.0 37 42727.0 38 50922.0 39 60753.5 40 75539.0 41 91288.0 42 106669.5 43 114710.0 44 119819.5 45 123071.5 46 120654.0 47 118053.5 48 107737.5 49 84817.5 50 70173.0 51 62640.0 52 49831.5 53 39887.0 54 32817.5 55 30894.5 56 29428.5 57 27485.0 58 25859.0 59 18721.0 60 10747.5 61 7320.0 62 5436.5 63 4120.0 64 3721.0 65 2981.0 66 1594.0 67 811.5 68 563.0 69 408.5 70 311.5 71 256.0 72 220.0 73 125.0 74 46.0 75 30.5 76 33.0 77 19.5 78 14.5 79 21.0 80 14.0 81 3.5 82 2.0 83 3.0 84 1.0 85 0.5 86 1.0 87 1.0 88 0.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1758761.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.185910828251373 #Duplication Level Percentage of deduplicated Percentage of total 1 75.28947689044341 17.45655097487513 2 10.688664547062398 4.956528461225612 3 4.046061777776842 2.814348827553902 4 2.0012449413800804 1.8560274702531077 5 1.2278860902461644 1.423482869784889 6 0.8688508636316838 1.2087059188328049 7 0.6270570213090649 1.017722172621063 8 0.4629097718660837 0.8586387753610562 9 0.3640809090513818 0.7597392742380632 >10 2.8051246718019387 13.598893194323605 >50 0.6514609363825287 10.881521689215928 >100 0.9558348938677839 39.55330554864604 >500 0.007646679143429103 1.1199910670911084 >1k 0.00345333896800024 1.5616849347898587 >5k 0.0 0.0 >10k+ 2.4666706914287426E-4 0.9328588211879216 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16311 0.9274142421852656 No Hit ACGCCGGGGGAGATTTTGTGTACCCTTCTTGCCTCCATAAAAACCATCAC 3970 0.22572708855836582 No Hit CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG 3869 0.2199844094791731 TruSeq Adapter, Index 23 (95% over 23bp) GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3072 0.1746684171413853 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGC 2825 0.16062443959128045 No Hit CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 2259 0.1284426934643195 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.6858208704878036E-5 0.0 0.0 0.13407165612610242 0.0 2 5.6858208704878036E-5 0.0 0.0 0.6319789897547193 0.0 3 5.6858208704878036E-5 0.0 0.0 0.9992830179882315 0.0 4 5.6858208704878036E-5 0.0 0.0 1.5455198290159948 0.0 5 5.6858208704878036E-5 0.0 0.0 2.817096808491887 0.0 6 5.6858208704878036E-5 0.0 0.0 3.8172895578193966 0.0 7 5.6858208704878036E-5 0.0 0.0 4.450576286374329 0.0 8 5.6858208704878036E-5 0.0 0.0 5.604627348457238 0.0 9 5.6858208704878036E-5 0.0 0.0 5.989784854224082 0.0 10 5.6858208704878036E-5 0.0 0.0 6.787278089518701 0.0 11 5.6858208704878036E-5 0.0 0.0 8.021328651249373 0.0 12 5.6858208704878036E-5 0.0 0.0 8.86880025199558 0.0 13 5.6858208704878036E-5 0.0 0.0 9.196132959509564 0.0 14 5.6858208704878036E-5 0.0 0.0 9.314113742572186 0.0 15 5.6858208704878036E-5 0.0 0.0 9.513174331247964 0.0 16 5.6858208704878036E-5 0.0 0.0 9.998800291796327 0.0 17 5.6858208704878036E-5 0.0 0.0 10.575399386272496 0.0 18 5.6858208704878036E-5 0.0 0.0 11.280384316004278 0.0 19 5.6858208704878036E-5 0.0 0.0 11.694141500749675 0.0 20 5.6858208704878036E-5 0.0 0.0 12.074124909524375 0.0 21 5.6858208704878036E-5 0.0 0.0 12.60102992959248 0.0 22 5.6858208704878036E-5 0.0 0.0 13.132369889939566 0.0 23 5.6858208704878036E-5 0.0 0.0 13.762586275224434 0.0 24 5.6858208704878036E-5 0.0 0.0 14.181119549501041 0.0 25 5.6858208704878036E-5 0.0 0.0 14.558260047840497 0.0 26 5.6858208704878036E-5 0.0 0.0 14.89946615827847 0.0 27 5.6858208704878036E-5 0.0 0.0 15.223557947896275 0.0 28 5.6858208704878036E-5 0.0 0.0 15.575282826944651 0.0 29 5.6858208704878036E-5 0.0 0.0 15.931215213437186 0.0 30 5.6858208704878036E-5 0.0 0.0 16.33291845793715 0.0 31 5.6858208704878036E-5 0.0 0.0 16.721714889061108 0.0 32 1.1371641740975607E-4 0.0 0.0 17.07867072331033 0.0 33 1.1371641740975607E-4 0.0 0.0 17.446145326169958 0.0 34 1.1371641740975607E-4 0.0 0.0 17.798666220140202 0.0 35 1.1371641740975607E-4 0.0 0.0 18.196844255700462 0.0 36 1.1371641740975607E-4 0.0 0.0 18.543167604921873 0.0 37 1.1371641740975607E-4 0.0 0.0 18.908367879433307 0.0 38 1.1371641740975607E-4 0.0 0.0 19.26856463157871 0.0 39 1.1371641740975607E-4 0.0 0.0 19.63234345087252 0.0 40 1.1371641740975607E-4 0.0 0.0 20.01187199397758 0.0 41 1.1371641740975607E-4 0.0 0.0 20.380085753550368 0.0 42 1.1371641740975607E-4 0.0 0.0 20.740964804200228 0.0 43 1.7057462611463412E-4 0.0 0.0 21.089050757891492 0.0 44 1.7057462611463412E-4 0.0 0.0 21.428494263859616 0.0 45 1.7057462611463412E-4 0.0 0.0 21.791647642857672 0.0 46 1.7057462611463412E-4 0.0 0.0 22.130863715990973 0.0 47 1.7057462611463412E-4 0.0 0.0 22.501806669581597 0.0 48 1.7057462611463412E-4 0.0 0.0 22.863652309779443 0.0 49 1.7057462611463412E-4 0.0 0.0 23.260579464748194 0.0 50 1.7057462611463412E-4 0.0 0.0 23.653355970481492 0.0 51 1.7057462611463412E-4 0.0 0.0 24.014803603218404 0.0 52 1.7057462611463412E-4 0.0 0.0 24.404396049264225 0.0 53 1.7057462611463412E-4 0.0 0.0 24.772552950628313 0.0 54 1.7057462611463412E-4 0.0 0.0 25.16453344143974 0.0 55 1.7057462611463412E-4 0.0 0.0 25.547473477067093 0.0 56 1.7057462611463412E-4 0.0 0.0 25.914379497839672 0.0 57 1.7057462611463412E-4 0.0 0.0 26.274576249985074 0.0 58 1.7057462611463412E-4 0.0 0.0 26.605377308230054 0.0 59 1.7057462611463412E-4 0.0 0.0 26.967393523054014 0.0 60 1.7057462611463412E-4 0.0 0.0 27.34243026767139 0.0 61 1.7057462611463412E-4 0.0 0.0 27.744645236049696 0.0 62 1.7057462611463412E-4 0.0 0.0 28.161813913317385 0.0 63 1.7057462611463412E-4 0.0 0.0 28.636068232124774 0.0 64 2.2743283481951214E-4 0.0 0.0 29.046243349721763 0.0 65 3.4114925222926824E-4 0.0 0.0 29.40928301230241 0.0 66 3.4114925222926824E-4 0.0 0.0 29.750261689905564 0.0 67 3.4114925222926824E-4 0.0 0.0 30.0945381436136 0.0 68 3.4114925222926824E-4 0.0 0.0 30.489645835903797 0.0 69 3.4114925222926824E-4 0.0 0.0 30.892997968456203 0.0 70 3.9800746093414624E-4 0.0 0.0 31.243756257956594 0.0 71 3.9800746093414624E-4 0.0 0.0 31.621749629426624 0.0 72 3.9800746093414624E-4 0.0 0.0 31.986267605433596 0.0 73 3.9800746093414624E-4 0.0 0.0 32.34697608145734 0.0 74 3.9800746093414624E-4 0.0 0.0 32.74447181851315 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTACCG 20 4.091505E-5 80.0 1 CGAAACG 260 0.0 76.92308 80 CGTTTTT 8705 0.0 74.89948 1 GGCGATT 570 0.0 71.57894 8 TGTTGCG 165 0.0 70.303024 1 TAGGGTA 1035 0.0 69.95169 5 CGCCGGG 740 0.0 69.189186 2 GATTGCG 110 0.0 69.090904 1 CGGGTAT 250 0.0 68.8 6 TAGGGCG 390 0.0 68.71795 5 GTTAGCG 35 1.181852E-7 68.57143 1 AGTACGG 275 0.0 68.36364 2 GTAAGCG 230 0.0 67.82609 1 ACGTTAG 65 0.0 67.69231 1 AATGCGG 195 0.0 67.69231 2 AAGTGCG 65 0.0 67.69231 1 CGGGTAC 120 0.0 66.666664 6 GTGCGCG 30 3.7964219E-6 66.666664 1 AACGTTG 110 0.0 65.454544 1 ACGGGAT 495 0.0 65.454544 5 >>END_MODULE