##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547279_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1186241 Sequences flagged as poor quality 0 Sequence length 86 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.01952891528787 33.0 31.0 34.0 31.0 34.0 2 32.432857235587036 34.0 31.0 34.0 31.0 34.0 3 32.49706256991623 34.0 31.0 34.0 31.0 34.0 4 36.065329052022314 37.0 35.0 37.0 35.0 37.0 5 36.04659761380697 37.0 35.0 37.0 35.0 37.0 6 36.099630682129515 37.0 36.0 37.0 35.0 37.0 7 36.33573616153885 37.0 37.0 37.0 35.0 37.0 8 36.33113085789481 37.0 37.0 37.0 35.0 37.0 9 38.11846580922426 39.0 39.0 39.0 37.0 39.0 10-11 37.650332436663376 39.0 37.5 39.0 35.0 39.0 12-13 36.96676097015699 39.0 35.0 39.0 33.5 39.0 14-15 38.15180262695355 40.0 36.0 41.0 33.0 41.0 16-17 38.30422485818649 40.0 36.0 41.0 34.0 41.0 18-19 38.10439573408776 40.0 36.0 41.0 34.0 41.0 20-21 37.82748067213998 40.0 35.0 41.0 34.0 41.0 22-23 37.62230019026488 39.5 35.0 41.0 33.0 41.0 24-25 37.56519585817722 39.0 35.0 41.0 33.0 41.0 26-27 37.49146084143104 39.0 35.0 41.0 33.5 41.0 28-29 37.3754527958484 39.0 35.0 41.0 33.0 41.0 30-31 37.18648234212104 39.0 35.0 41.0 33.0 41.0 32-33 36.7366850412353 39.0 35.0 41.0 32.0 41.0 34-35 36.31468605452012 39.0 35.0 41.0 30.5 41.0 36-37 36.06206495981845 39.0 35.0 41.0 30.0 41.0 38-39 35.97263203682894 39.0 35.0 41.0 30.0 41.0 40-41 35.85992053891242 39.0 35.0 41.0 29.0 41.0 42-43 35.80004274005029 38.5 35.0 41.0 29.0 41.0 44-45 35.66841223663657 38.0 35.0 41.0 28.5 41.0 46-47 35.53986710963455 38.0 35.0 41.0 28.0 41.0 48-49 35.446410130825015 38.0 35.0 40.0 28.0 41.0 50-51 35.23166413907461 37.5 35.0 40.0 27.0 41.0 52-53 35.0524332745201 37.0 35.0 40.0 26.5 41.0 54-55 34.87732551817042 37.0 34.5 40.0 26.0 41.0 56-57 34.59110922653997 36.0 34.0 40.0 25.5 41.0 58-59 34.35366506468753 36.0 34.0 40.0 25.0 41.0 60-61 33.99761557727308 35.5 34.0 39.0 24.0 41.0 62-63 33.56841105643794 35.0 33.5 39.0 22.5 40.0 64-65 33.18407853041667 35.0 33.0 38.5 21.5 40.0 66-67 32.83360969651192 35.0 33.0 37.5 20.0 40.0 68-69 32.34363927734752 35.0 32.5 37.0 18.5 39.5 70-71 31.992776341401118 35.0 32.0 36.5 17.5 39.0 72-73 31.690308714670962 35.0 32.0 36.0 15.0 39.0 74-75 31.387755523540328 35.0 32.0 35.5 14.0 38.0 76-77 29.453466454118512 33.0 29.0 34.5 10.5 36.0 78-79 30.416192830967738 34.0 30.5 35.0 11.0 36.0 80-81 30.56088686868857 34.5 31.0 35.0 10.0 36.0 82-83 30.358220631389404 34.0 31.0 35.0 10.0 36.0 84-85 30.139479245785637 34.0 31.0 35.0 10.0 36.0 86 29.716855175297432 34.0 30.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 0.0 10 4.0 11 7.0 12 12.0 13 45.0 14 184.0 15 574.0 16 1523.0 17 3892.0 18 8700.0 19 14016.0 20 15259.0 21 13890.0 22 11321.0 23 9584.0 24 9350.0 25 10011.0 26 11560.0 27 13978.0 28 16988.0 29 20879.0 30 26304.0 31 32891.0 32 39991.0 33 49984.0 34 123239.0 35 126726.0 36 97267.0 37 165533.0 38 251188.0 39 111074.0 40 265.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.198044916673762 23.604141148383846 29.610509162977845 15.58730477196455 2 33.38739767045651 25.32689394482234 29.06171680122336 12.223991583497789 3 27.928473219185644 24.54484375434671 34.612359545825846 12.914323480641793 4 24.481113028465547 26.461570625193364 35.037821151014 14.019495195327089 5 23.855354856222302 31.214904897065605 32.07611269548094 12.853627551231158 6 22.377071775465527 39.59574825014479 27.731211448601083 10.295968525788604 7 85.08254224900337 3.4293200117008267 9.987093685010045 1.501044054285765 8 85.70400112624668 3.1851874956269426 9.577480461390223 1.533330916736144 9 81.40774092279732 5.685691187541149 10.432871566570368 2.4736963230911764 10-11 39.09740937971289 26.795904036363606 22.227734499144777 11.878952084778724 12-13 26.920667891263246 27.1611333616019 29.772112075033657 16.1460866721012 14-15 16.219554036658657 32.96235756477815 35.32423006792043 15.493858330642762 16-17 20.147086468938436 27.47342234840981 33.46305683246491 18.91643435018685 18-19 22.17926205551823 29.241781391808242 31.2349682737319 17.343988278941634 20-21 24.0382856434738 29.290759634846548 30.93869626829624 15.73225845338342 22-23 20.45237856388373 26.866041554793675 32.18603976763575 20.495540113686847 24-25 18.20797797412162 29.41324739239328 34.5446667245526 17.834107908932502 26-27 17.90820752275465 34.667323081903255 30.2052449713001 17.219224424041997 28-29 16.49921896140835 29.46083468704926 35.8230325878131 18.21691376372929 30-31 20.572000124763857 30.69068595673223 30.974608026530863 17.762705891973045 32-33 23.312337037752027 30.57114869575407 29.01788085220457 17.09863341428934 34-35 18.50450287926315 31.629786864557875 29.922418800226936 19.943291455952036 36-37 21.900524429690087 31.416634562454004 29.424838628912674 17.25800237894323 38-39 19.054559739547024 32.885012404730574 28.76654069451317 19.29388716120923 40-41 19.52988473674405 30.620674888155104 28.404725515304225 21.44471485979662 42-43 20.619334519713952 29.46370088371587 28.6046427328005 21.31232186376967 44-45 18.65295500661333 33.522277513591256 27.747397029777254 20.07737045001817 46-47 20.305401684817838 32.110043406019514 27.93555441095022 19.64900049821242 48-49 20.457267958197363 29.445112755333863 30.1409662960562 19.95665299041257 50-51 18.626274087643235 33.03826962649242 28.025165206732865 20.310291079131478 52-53 20.046432385999136 29.89114353660007 29.85750787571834 20.204916201682458 54-55 20.605720085547542 29.955422211843967 30.509399017568946 18.92945868503955 56-57 20.882729563385517 28.547445249321175 29.434617417539943 21.135207769753364 58-59 21.497528748374066 30.489462090755588 28.211004340601953 19.802004820268394 60-61 22.015172296354617 32.05899981538322 26.562182558181686 19.36364533008048 62-63 21.154259547596148 30.107836434586225 29.548211535429985 19.189692482387642 64-65 18.475040063528407 33.69100376736262 29.34926376680624 18.484692402302734 66-67 17.796257252952817 32.64796108042126 26.06717353387718 23.48860813274874 68-69 17.882201003000233 34.480345899357715 25.32651459526353 22.310938502378523 70-71 18.530003599605813 33.03843822629634 27.426678052773422 21.00488012132442 72-73 20.78068453206389 32.66351441233274 26.662288691758253 19.89351236384512 74-75 19.92141563139362 34.11018502985481 24.998250777034347 20.970148561717224 76-77 23.352885290594408 31.90818729077818 25.496041698103504 19.242885720523905 78-79 18.552132323870108 32.76914218948763 28.201857801239377 20.476867685402883 80-81 16.48404497905569 31.97811405945335 29.675883736947213 21.861957224543747 82-83 18.155374835299067 30.269987296004775 30.423160217864663 21.15147765083149 84-85 16.6609483233171 30.53730228511744 28.729659487406018 24.07208990415944 86 18.018513944468282 30.368871081002936 29.2524031794551 22.36021179507368 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 459.0 1 742.0 2 6568.5 3 7213.5 4 2742.0 5 4364.5 6 6846.5 7 8133.0 8 8579.5 9 8290.0 10 6991.0 11 5951.5 12 5184.5 13 4887.0 14 4880.0 15 4914.5 16 4977.5 17 4971.5 18 5040.0 19 5116.5 20 5356.0 21 5622.0 22 5731.0 23 6241.0 24 7289.0 25 7999.5 26 8424.5 27 9922.5 28 11742.5 29 12426.0 30 14361.5 31 17730.5 32 20785.0 33 23434.5 34 26087.5 35 30615.5 36 33519.0 37 34095.0 38 36402.5 39 39426.5 40 43232.0 41 49835.0 42 57456.0 43 60987.0 44 62408.5 45 62283.5 46 62931.5 47 64335.0 48 62241.5 49 56064.5 50 51190.0 51 46136.5 52 38191.5 53 33123.5 54 29189.0 55 26495.0 56 22829.0 57 20099.0 58 18915.5 59 15285.0 60 10964.5 61 8018.0 62 5807.5 63 3663.5 64 2657.0 65 2329.5 66 1678.5 67 1142.0 68 780.5 69 544.0 70 385.0 71 314.0 72 272.0 73 149.0 74 87.0 75 75.5 76 52.0 77 35.0 78 10.5 79 10.0 80 13.0 81 9.5 82 3.0 83 3.0 84 3.0 85 3.5 86 4.0 87 2.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1186241.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.639433302113645 #Duplication Level Percentage of deduplicated Percentage of total 1 77.89820237000042 18.414693592801758 2 7.971433425485844 3.7688033756802373 3 2.999002335583985 2.1268414705476193 4 1.6573658717214754 1.56716759927037 5 1.0479287416807053 1.2386220797164453 6 0.762313182009211 1.0812390972857255 7 0.5623954432289404 0.9306296698736224 8 0.437468321183324 0.8273202560320653 9 0.3389890403425189 0.7212157928392039 >10 4.198856449434936 23.28312971935862 >50 1.543335065794596 26.491595448198563 >100 0.5791105580211872 17.318122400960416 >500 0.0028793564102979944 0.4244787989741341 >1k 3.599195512872493E-4 0.12932607224708034 >5k 0.0 0.0 >10k+ 3.599195512872493E-4 1.6768146262141177 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19708 1.6613824678121898 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGC 1520 0.1281358509780053 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05850413195969453 0.0 2 8.429990195921402E-5 0.0 0.0 0.1869771825455367 0.0 3 8.429990195921402E-5 0.0 0.0 0.281645972445734 0.0 4 8.429990195921402E-5 0.0 0.0 0.4267261037175414 0.0 5 8.429990195921402E-5 0.0 0.0 0.8180462486122129 0.0 6 8.429990195921402E-5 0.0 0.0 1.154402857429477 0.0 7 8.429990195921402E-5 0.0 0.0 1.4091571611502216 0.0 8 8.429990195921402E-5 0.0 0.0 1.833101368103109 0.0 9 8.429990195921402E-5 0.0 0.0 2.0038086695705175 0.0 10 8.429990195921402E-5 0.0 0.0 2.3238110974076935 0.0 11 8.429990195921402E-5 0.0 0.0 2.7778503693600203 0.0 12 8.429990195921402E-5 0.0 0.0 3.087736808962091 0.0 13 8.429990195921402E-5 0.0 0.0 3.195640683469885 0.0 14 8.429990195921402E-5 0.0 0.0 3.2383807337632065 0.0 15 8.429990195921402E-5 0.0 0.0 3.3096984508207017 0.0 16 8.429990195921402E-5 0.0 0.0 3.454778582092509 0.0 17 8.429990195921402E-5 0.0 0.0 3.64234586395176 0.0 18 8.429990195921402E-5 0.0 0.0 3.8558775156144494 0.0 19 1.6859980391842805E-4 0.0 0.0 4.000114647866664 0.0 20 1.6859980391842805E-4 0.0 0.0 4.144267480216921 0.0 21 1.6859980391842805E-4 0.0 0.0 4.324163470997883 0.0 22 1.6859980391842805E-4 0.0 0.0 4.534576026288081 0.0 23 1.6859980391842805E-4 0.0 0.0 4.746421679911586 0.0 24 1.6859980391842805E-4 0.0 0.0 4.90364099706552 0.0 25 1.6859980391842805E-4 0.0 0.0 5.056392419415616 0.0 26 1.6859980391842805E-4 0.0 0.0 5.189923464119011 0.0 27 1.6859980391842805E-4 0.0 0.0 5.3335704970575115 0.0 28 1.6859980391842805E-4 0.0 0.0 5.485900419897812 0.0 29 1.6859980391842805E-4 0.0 0.0 5.663098813816079 0.0 30 1.6859980391842805E-4 0.0 0.0 5.848137098616554 0.0 31 1.6859980391842805E-4 0.0 0.0 6.036463079593439 0.0 32 1.6859980391842805E-4 0.0 0.0 6.210795276845093 0.0 33 1.6859980391842805E-4 0.0 0.0 6.393388864488751 0.0 34 1.6859980391842805E-4 0.0 0.0 6.571598857230529 0.0 35 1.6859980391842805E-4 0.0 0.0 6.780072514775665 0.0 36 1.6859980391842805E-4 0.0 0.0 6.968229895948631 0.0 37 1.6859980391842805E-4 0.0 0.0 7.176534953689849 0.0 38 1.6859980391842805E-4 0.0 0.0 7.396726297607316 0.0 39 1.6859980391842805E-4 0.0 0.0 7.6627767881905955 0.0 40 1.6859980391842805E-4 0.0 0.0 7.883305331715899 0.0 41 2.5289970587764204E-4 0.0 0.0 8.1170689598488 0.0 42 2.5289970587764204E-4 0.0 0.0 8.338356202491736 0.0 43 2.5289970587764204E-4 0.0 0.0 8.554163951507324 0.0 44 2.5289970587764204E-4 0.0 0.0 8.763480608072053 8.429990195921402E-5 45 2.5289970587764204E-4 0.0 0.0 8.989488645224705 8.429990195921402E-5 46 2.5289970587764204E-4 0.0 0.0 9.216339681396951 8.429990195921402E-5 47 2.5289970587764204E-4 0.0 0.0 9.45979779825516 8.429990195921402E-5 48 2.5289970587764204E-4 0.0 0.0 9.699293819721287 8.429990195921402E-5 49 2.5289970587764204E-4 0.0 0.0 9.936766643540393 8.429990195921402E-5 50 2.5289970587764204E-4 0.0 0.0 10.183259556869135 8.429990195921402E-5 51 2.5289970587764204E-4 0.0 0.0 10.429668170295917 8.429990195921402E-5 52 2.5289970587764204E-4 0.0 0.0 10.697320359016423 8.429990195921402E-5 53 2.5289970587764204E-4 0.0 0.0 10.944066172051041 8.429990195921402E-5 54 2.5289970587764204E-4 0.0 0.0 11.21348865871269 8.429990195921402E-5 55 2.5289970587764204E-4 0.0 0.0 11.46984466057066 8.429990195921402E-5 56 2.5289970587764204E-4 0.0 0.0 11.736148050859818 8.429990195921402E-5 57 2.5289970587764204E-4 0.0 0.0 12.000006743992158 8.429990195921402E-5 58 2.5289970587764204E-4 0.0 0.0 12.24742695624245 8.429990195921402E-5 59 2.5289970587764204E-4 0.0 0.0 12.510695550061076 8.429990195921402E-5 60 2.5289970587764204E-4 0.0 0.0 12.784080132114806 8.429990195921402E-5 61 2.5289970587764204E-4 0.0 0.0 13.067243502795806 8.429990195921402E-5 62 2.5289970587764204E-4 0.0 0.0 13.37772004171159 8.429990195921402E-5 63 2.5289970587764204E-4 0.0 0.0 13.686173382980355 8.429990195921402E-5 64 2.5289970587764204E-4 0.0 0.0 13.992013427288384 8.429990195921402E-5 65 2.5289970587764204E-4 0.0 0.0 14.27559829747918 8.429990195921402E-5 66 2.5289970587764204E-4 0.0 0.0 14.53726519316058 8.429990195921402E-5 67 2.5289970587764204E-4 0.0 0.0 14.819754164625907 8.429990195921402E-5 68 2.5289970587764204E-4 0.0 0.0 15.123149511777118 8.429990195921402E-5 69 2.5289970587764204E-4 0.0 0.0 15.49929567431913 8.429990195921402E-5 70 2.5289970587764204E-4 0.0 0.0 15.797717327254748 8.429990195921402E-5 71 2.5289970587764204E-4 0.0 0.0 16.096223280092325 8.429990195921402E-5 72 2.5289970587764204E-4 0.0 0.0 16.371715359695038 8.429990195921402E-5 73 2.5289970587764204E-4 0.0 0.0 16.65319273233685 8.429990195921402E-5 74 2.5289970587764204E-4 0.0 0.0 16.964090770762432 8.429990195921402E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 40 4.1836756E-11 80.0 1 CGTAAGG 270 0.0 77.03703 2 CGTTTTT 8020 0.0 75.710724 1 ATTACGG 180 0.0 68.888885 2 TAGCGCG 35 1.1815246E-7 68.57143 1 CGTTCGA 35 1.1815246E-7 68.57143 6 CGGGACG 70 0.0 68.57143 6 CGGGATC 270 0.0 68.14815 6 CGCGAGG 120 0.0 66.666664 2 CGAGGGA 665 0.0 66.16542 4 GGCGATA 115 0.0 66.08696 8 TCGAAAG 115 0.0 66.08696 1 TTACGGG 495 0.0 65.45455 3 GGTTACG 55 9.094947E-12 65.454544 1 ACGGGAT 575 0.0 64.695656 5 GCGAGGG 720 0.0 64.44444 3 TACGGGA 535 0.0 64.299065 4 TTAGGGA 1645 0.0 63.465042 4 AGGGCGA 435 0.0 63.448277 6 ATTAGCG 120 0.0 63.333332 1 >>END_MODULE