##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547273_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2813500 Sequences flagged as poor quality 0 Sequence length 86 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.0292379598365 33.0 31.0 34.0 31.0 34.0 2 32.44881322196552 34.0 31.0 34.0 31.0 34.0 3 32.486175937444465 34.0 31.0 34.0 31.0 34.0 4 36.065346010307444 37.0 35.0 37.0 35.0 37.0 5 36.046633374800074 37.0 35.0 37.0 35.0 37.0 6 36.11110360760618 37.0 36.0 37.0 35.0 37.0 7 36.359273147325396 37.0 37.0 37.0 35.0 37.0 8 36.36492660387418 37.0 37.0 37.0 35.0 37.0 9 38.162196196907765 39.0 39.0 39.0 37.0 39.0 10-11 37.687574373556075 39.0 37.5 39.0 35.0 39.0 12-13 37.00536431491025 39.0 35.0 39.0 33.5 39.0 14-15 38.157750133285944 40.0 36.0 41.0 33.0 41.0 16-17 38.335972631953084 40.0 36.0 41.0 34.0 41.0 18-19 38.10026905988982 40.0 36.0 41.0 34.0 41.0 20-21 37.775240980984535 40.0 35.0 41.0 34.0 41.0 22-23 37.57469806291097 39.0 35.0 41.0 33.5 41.0 24-25 37.500516438599604 39.0 35.0 41.0 34.0 41.0 26-27 37.41683845743735 39.0 35.0 41.0 33.5 41.0 28-29 37.279430957881644 39.0 35.0 41.0 33.0 41.0 30-31 37.03244944019904 39.0 35.0 41.0 33.0 41.0 32-33 36.52112155677981 39.0 35.0 41.0 31.5 41.0 34-35 36.048293051359515 38.0 35.0 41.0 30.0 41.0 36-37 35.79065114625911 38.0 35.0 41.0 29.5 41.0 38-39 35.67401386173805 38.0 35.0 41.0 29.0 41.0 40-41 35.50850613115337 38.0 35.0 41.0 27.0 41.0 42-43 35.42265949884485 38.0 35.0 41.0 27.0 41.0 44-45 35.28798453883064 38.0 35.0 40.5 27.0 41.0 46-47 35.16929500622001 37.5 35.0 40.0 26.0 41.0 48-49 35.05232948285054 37.0 35.0 40.0 26.0 41.0 50-51 34.804235116403056 37.0 35.0 40.0 25.0 41.0 52-53 34.614625555358096 36.0 34.0 40.0 24.0 41.0 54-55 34.40103714234939 36.0 34.0 40.0 24.5 41.0 56-57 34.09342278301048 35.5 34.0 39.5 23.5 41.0 58-59 33.81394313133109 35.0 34.0 39.0 23.0 41.0 60-61 33.419268349031455 35.0 33.5 39.0 22.0 40.5 62-63 32.97044304247379 35.0 33.0 38.0 20.5 40.0 64-65 32.56077057046383 35.0 33.0 37.5 19.5 40.0 66-67 32.16583827972276 35.0 32.5 37.0 17.5 40.0 68-69 31.63587026834903 35.0 32.0 36.5 13.0 39.0 70-71 31.291832059712103 35.0 31.5 36.0 10.5 39.0 72-73 31.01578176648303 35.0 31.0 35.5 10.0 38.0 74-75 30.728834725430957 35.0 31.0 35.0 10.0 37.0 76-77 28.843843255731294 32.5 28.0 34.5 10.0 35.5 78-79 29.823725608672472 34.0 29.5 35.0 10.0 36.0 80-81 29.969803803092233 34.0 30.0 35.0 10.0 36.0 82-83 29.78340536698063 34.0 30.0 35.0 10.0 36.0 84-85 29.561981695397193 34.0 30.0 35.0 8.0 35.0 86 29.189107517327173 34.0 29.0 35.0 8.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 7.0 10 9.0 11 21.0 12 38.0 13 113.0 14 450.0 15 1384.0 16 3880.0 17 9957.0 18 23753.0 19 36701.0 20 39449.0 21 36230.0 22 30120.0 23 25915.0 24 24795.0 25 26969.0 26 31312.0 27 37034.0 28 45103.0 29 55733.0 30 71377.0 31 87642.0 32 96695.0 33 118528.0 34 295752.0 35 321788.0 36 239407.0 37 384563.0 38 546459.0 39 221861.0 40 449.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.367300515372314 23.51000533143771 29.271832237426693 17.850861915763282 2 33.959516616314204 24.27218766660743 29.7687933179314 11.999502399146971 3 26.927065932113024 23.258325928558733 37.14654345121735 12.668064688110894 4 24.331402168118004 25.538333037142348 36.783579171850015 13.34668562288964 5 22.10015994313133 30.80746401279545 34.26728274391328 12.825093300159942 6 21.32383152656833 38.57618624489071 30.296214679225166 9.803767549315799 7 83.91789585925005 2.825199928914164 11.679545050648658 1.5773591611871334 8 84.54089212724365 2.3016172027723476 11.432059712102363 1.725430957881642 9 80.29521947751911 4.582974942242759 12.902861204904923 2.2189443753332148 10-11 37.804229607250754 25.308636929091875 25.29818731117825 11.588946152479117 12-13 27.619193175759733 25.813701794917364 30.399715656655413 16.167389372667497 14-15 15.010005331437712 31.904922694153193 37.57273858183757 15.51233339257153 16-17 19.663319708548073 26.686653634263376 35.479349564599254 18.1706770925893 18-19 21.59968011373734 29.01494579704994 32.31908654700551 17.066287542207213 20-21 24.221610094188733 29.585534032344057 30.83522303181091 15.357632841656299 22-23 19.377519104318463 26.992340501155144 33.16930869024347 20.460831704282924 24-25 18.000462057934957 29.299911142704815 35.777483561400395 16.922143237959837 26-27 17.11498133996801 34.98752443575617 31.09292695930336 16.80456726497245 28-29 15.931135596232451 29.930371423493867 36.36959303358806 17.76889994668562 30-31 21.028789763639594 30.564314910254133 31.651199573484984 16.755695752621293 32-33 24.112724364670342 30.382992713701796 29.67794561933535 15.826337302292517 34-35 18.437977607961614 31.280220366092053 30.847805224808955 19.433996801137372 36-37 21.671121379065223 31.582797227652392 30.242491558556956 16.50358983472543 38-39 19.133285942775903 32.72296072507553 29.296267993602278 18.847485338546292 40-41 20.25137728807535 29.90007108583615 28.86134707659499 20.987204549493512 42-43 20.377074817842544 28.983774657899414 29.476968189088325 21.162182335169717 44-45 18.867193886618093 33.112155677981164 28.69138084236716 19.329269593033587 46-47 20.164261595877022 32.11773591611871 28.093602274746754 19.62440021325751 48-49 20.085267460458503 28.601972631953082 31.579296250222143 19.733463657366272 50-51 18.150239914696996 32.0562822107695 29.72887862093478 20.06459925359872 52-53 20.79680113737338 28.748320597121023 30.612884307801668 19.841993957703927 54-55 20.444499733428113 29.548480540252353 30.96735382974942 19.039665896570106 56-57 20.719584147858537 27.46531011196019 30.695663763995025 21.119441976186245 58-59 22.0794206504354 30.225857472898525 29.034760973875954 18.659960902790118 60-61 22.411942420472723 32.29713879509507 27.053740892127244 18.23717789230496 62-63 21.30227474675671 30.33042473787098 29.71764705882353 18.64965345654878 64-65 18.988253065576686 33.73428114448196 29.246116936200462 18.03134885374089 66-67 17.899289141638526 33.01553225519815 26.57961613648481 22.505562466678512 68-69 17.812599964457082 34.4404833836858 26.290901012973166 21.45601563888395 70-71 19.001084059001244 32.88066465256797 28.321912208992355 19.79633907943842 72-73 21.220063977252533 32.999697885196376 27.307783899058112 18.47245423849298 74-75 20.26714057224098 34.0384574373556 25.457046383508086 20.237355606895328 76-77 23.636538119779633 31.228238848409458 26.532663941709618 18.6025590901013 78-79 18.579900479829394 32.24897814110538 29.537942065043538 19.63317931402168 80-81 16.739470410520703 31.462484449973342 30.185711746934423 21.612333392571532 82-83 18.566038741780698 30.070055091523013 31.038457437355603 20.32544872934068 84-85 16.942065043540076 30.093975475386532 29.37782121912209 23.586138261951305 86 18.06127599075884 30.126283987915407 30.674640127954504 21.137799893371245 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 998.0 1 1718.5 2 29344.0 3 31924.5 4 8266.5 5 12387.5 6 19976.5 7 24111.0 8 26284.0 9 27212.5 10 23845.5 11 19832.0 12 16779.0 13 15127.0 14 14637.0 15 14382.5 16 13892.5 17 13631.0 18 13921.5 19 13940.5 20 13692.5 21 13742.0 22 13434.5 23 13779.5 24 15132.5 25 17257.0 26 20101.0 27 22806.0 28 25902.5 29 27714.0 30 28866.5 31 32997.5 32 37692.5 33 44578.5 34 52637.5 35 59355.5 36 63184.0 37 66905.5 38 78018.0 39 90368.5 40 100989.0 41 115405.0 42 130205.5 43 136251.0 44 142195.0 45 151074.0 46 153467.0 47 152582.0 48 147041.5 49 131662.5 50 121481.0 51 108050.0 52 91245.5 53 80616.5 54 70951.0 55 65356.0 56 59759.0 57 57347.0 58 49932.5 59 36799.5 60 26786.5 61 19098.5 62 13865.5 63 10319.0 64 8612.0 65 7002.5 66 4335.0 67 2975.0 68 2218.0 69 1279.5 70 695.0 71 594.0 72 440.5 73 240.0 74 157.0 75 97.0 76 54.0 77 35.5 78 30.5 79 25.0 80 17.5 81 9.5 82 7.0 83 4.0 84 4.5 85 4.0 86 2.0 87 1.0 88 0.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2813500.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.553423802784913 #Duplication Level Percentage of deduplicated Percentage of total 1 76.59025332517149 14.976016824297345 2 9.112559605950231 3.563634798065671 3 3.5013809710875012 2.053919580680415 4 2.077627083289072 1.6249889145478054 5 1.3451722466107636 1.3151361512862279 6 0.9279254529621429 1.0886471783495961 7 0.6535063015758664 0.8944799970752436 8 0.49975416540994166 0.7817523994774129 9 0.34625906391805206 0.6093495200110736 >10 2.869789986497455 12.217221347745086 >50 0.8192063812580683 11.599886876816333 >100 1.2490090736778607 44.7375632311265 >500 0.004791827009322379 0.5606301478001537 >1k 0.002580214543481281 0.885433099662517 >5k 0.0 0.0 >10k+ 1.843010388200915E-4 3.091339933058609 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 85782 3.048942598187311 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGC 3060 0.10876132930513595 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0662875422072152E-4 0.0 0.0 0.05494935134174516 0.0 2 1.0662875422072152E-4 0.0 0.0 0.16516794028789764 0.0 3 1.0662875422072152E-4 0.0 0.0 0.26454593922161007 0.0 4 1.0662875422072152E-4 0.0 0.0 0.43739114981339966 0.0 5 1.0662875422072152E-4 0.0 0.0 0.8940465612226763 0.0 6 1.0662875422072152E-4 0.0 0.0 1.447200995201706 0.0 7 1.0662875422072152E-4 0.0 0.0 1.9277057046383508 0.0 8 1.0662875422072152E-4 0.0 0.0 2.6075350986315975 0.0 9 1.0662875422072152E-4 0.0 0.0 2.9380842367158344 0.0 10 1.0662875422072152E-4 0.0 0.0 3.3016172027723476 0.0 11 1.0662875422072152E-4 0.0 0.0 3.836289319353119 0.0 12 1.0662875422072152E-4 0.0 0.0 4.188697352052603 0.0 13 1.0662875422072152E-4 0.0 0.0 4.317860316331971 0.0 14 1.0662875422072152E-4 0.0 0.0 4.368224631242225 0.0 15 1.0662875422072152E-4 0.0 0.0 4.435614003909721 0.0 16 1.0662875422072152E-4 0.0 0.0 4.5775368757775015 7.108583614714768E-5 17 1.0662875422072152E-4 0.0 0.0 4.768864403767549 7.108583614714768E-5 18 1.0662875422072152E-4 0.0 0.0 4.986564776968189 7.108583614714768E-5 19 1.0662875422072152E-4 0.0 0.0 5.133890172383152 7.108583614714768E-5 20 1.0662875422072152E-4 0.0 0.0 5.27638173094011 7.108583614714768E-5 21 1.0662875422072152E-4 0.0 0.0 5.450257686156033 7.108583614714768E-5 22 1.0662875422072152E-4 0.0 0.0 5.645459392216101 7.108583614714768E-5 23 1.0662875422072152E-4 0.0 0.0 5.844393104673894 7.108583614714768E-5 24 1.0662875422072152E-4 0.0 0.0 5.995699306913098 7.108583614714768E-5 25 1.0662875422072152E-4 0.0 0.0 6.1223031810911674 7.108583614714768E-5 26 1.0662875422072152E-4 0.0 0.0 6.243255731295539 7.108583614714768E-5 27 1.0662875422072152E-4 0.0 0.0 6.367869202061489 7.108583614714768E-5 28 1.0662875422072152E-4 0.0 0.0 6.5013684023458325 7.108583614714768E-5 29 1.0662875422072152E-4 0.0 0.0 6.665470055091523 7.108583614714768E-5 30 1.4217167229429537E-4 0.0 0.0 6.860387417807002 7.108583614714768E-5 31 1.4217167229429537E-4 0.0 0.0 7.022001066287542 7.108583614714768E-5 32 1.4217167229429537E-4 0.0 0.0 7.172489781411054 7.108583614714768E-5 33 1.4217167229429537E-4 0.0 0.0 7.321521236893549 7.108583614714768E-5 34 1.7771459036786921E-4 0.0 0.0 7.489070552692376 7.108583614714768E-5 35 1.7771459036786921E-4 0.0 0.0 7.682139683668029 7.108583614714768E-5 36 1.7771459036786921E-4 0.0 0.0 7.853811977963391 7.108583614714768E-5 37 1.7771459036786921E-4 0.0 0.0 8.03401457259641 7.108583614714768E-5 38 1.7771459036786921E-4 0.0 0.0 8.234618802203661 7.108583614714768E-5 39 1.7771459036786921E-4 0.0 0.0 8.538261951306202 7.108583614714768E-5 40 1.7771459036786921E-4 0.0 0.0 8.743060245246134 7.108583614714768E-5 41 1.7771459036786921E-4 0.0 0.0 8.9564243824418 7.108583614714768E-5 42 1.7771459036786921E-4 0.0 0.0 9.164492624844499 7.108583614714768E-5 43 1.7771459036786921E-4 0.0 0.0 9.366092056157811 7.108583614714768E-5 44 1.7771459036786921E-4 0.0 0.0 9.559729873822642 7.108583614714768E-5 45 1.7771459036786921E-4 0.0 0.0 9.759090101297316 7.108583614714768E-5 46 1.7771459036786921E-4 0.0 0.0 9.979527279189622 7.108583614714768E-5 47 1.7771459036786921E-4 0.0 0.0 10.20088857295184 7.108583614714768E-5 48 1.7771459036786921E-4 0.0 0.0 10.413257508441443 7.108583614714768E-5 49 1.7771459036786921E-4 0.0 0.0 10.642793673360583 7.108583614714768E-5 50 1.7771459036786921E-4 0.0 0.0 10.883312599964457 7.108583614714768E-5 51 1.7771459036786921E-4 0.0 0.0 11.115123511640306 7.108583614714768E-5 52 1.7771459036786921E-4 0.0 0.0 11.383756886440377 7.108583614714768E-5 53 1.7771459036786921E-4 0.0 0.0 11.613079793851075 7.108583614714768E-5 54 1.7771459036786921E-4 0.0 0.0 11.847272081037854 7.108583614714768E-5 55 1.7771459036786921E-4 0.0 0.0 12.085942775901902 7.108583614714768E-5 56 1.7771459036786921E-4 0.0 0.0 12.33755109294473 7.108583614714768E-5 57 1.7771459036786921E-4 0.0 0.0 12.581766483028257 7.108583614714768E-5 58 1.7771459036786921E-4 0.0 0.0 12.809703216634086 7.108583614714768E-5 59 1.7771459036786921E-4 0.0 0.0 13.056762040163498 7.108583614714768E-5 60 1.7771459036786921E-4 0.0 0.0 13.305171494579705 7.108583614714768E-5 61 1.7771459036786921E-4 0.0 0.0 13.579669450861916 7.108583614714768E-5 62 1.7771459036786921E-4 0.0 0.0 13.876701617202773 7.108583614714768E-5 63 1.7771459036786921E-4 0.0 0.0 14.204762751021859 7.108583614714768E-5 64 1.7771459036786921E-4 0.0 0.0 14.497387595521593 7.108583614714768E-5 65 1.7771459036786921E-4 0.0 0.0 14.767016172027724 7.108583614714768E-5 66 2.1325750844144304E-4 0.0 0.0 15.03252177003732 7.108583614714768E-5 67 2.1325750844144304E-4 0.0 0.0 15.291949529056335 7.108583614714768E-5 68 2.4880042651501686E-4 0.0 0.0 15.592678158876843 7.108583614714768E-5 69 2.4880042651501686E-4 0.0 0.0 15.976897103252178 7.108583614714768E-5 70 2.4880042651501686E-4 0.0 0.0 16.258610271903322 7.108583614714768E-5 71 2.4880042651501686E-4 0.0 0.0 16.53865292340501 1.0662875422072152E-4 72 2.4880042651501686E-4 0.0 0.0 16.81005864581482 1.0662875422072152E-4 73 2.4880042651501686E-4 0.0 0.0 17.092980273680467 1.0662875422072152E-4 74 2.4880042651501686E-4 0.0 0.0 17.388448551626087 1.0662875422072152E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 25220 0.0 76.2728 1 GCGATCG 35 1.18210664E-7 68.57143 9 GGCGATT 885 0.0 67.344635 8 GCGGGAT 1565 0.0 66.19808 5 TAGCGGG 1700 0.0 65.411766 3 CGAGGGA 1680 0.0 65.2381 4 ACGGGAT 970 0.0 64.74227 5 CGGGATC 835 0.0 64.670654 6 TACGGGA 1010 0.0 64.55446 4 CGTAAGG 570 0.0 63.85965 2 TAGGGTA 2015 0.0 63.126553 5 ACGGGTC 515 0.0 62.91262 5 CGGGATT 1145 0.0 62.183407 6 GACCGAT 670 0.0 62.089554 9 TAAGGGA 3800 0.0 61.894737 4 ATTGCGG 745 0.0 61.74497 2 ATAGGGA 3625 0.0 61.68276 4 AGGGATT 4715 0.0 60.99682 6 TAGGGAC 2840 0.0 60.985916 5 TAGGGCG 730 0.0 60.82192 5 >>END_MODULE