##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547270_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1164531 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.22045097983652 33.0 31.0 34.0 31.0 34.0 2 32.64761350277494 34.0 31.0 34.0 31.0 34.0 3 32.73169284458722 34.0 31.0 34.0 31.0 34.0 4 36.23801427355734 37.0 37.0 37.0 35.0 37.0 5 36.21864252647632 37.0 37.0 37.0 35.0 37.0 6 36.27363805686581 37.0 37.0 37.0 35.0 37.0 7 36.434522567454195 37.0 37.0 37.0 35.0 37.0 8 36.42173458671345 37.0 37.0 37.0 35.0 37.0 9 38.18790053678262 39.0 39.0 39.0 37.0 39.0 10-11 37.86702844321019 39.0 37.5 39.0 35.0 39.0 12-13 36.77885689603798 39.0 35.0 39.0 34.0 39.0 14-15 37.81340470970717 40.0 35.0 41.0 33.0 41.0 16-17 38.0451164460199 40.0 35.0 41.0 34.0 41.0 18-19 37.92376673527798 39.0 36.0 41.0 34.0 41.0 20-21 37.67143510992837 39.0 35.0 41.0 34.0 41.0 22-23 37.47844325312079 39.0 35.0 41.0 34.0 41.0 24-25 37.46543501203489 39.0 35.0 41.0 34.0 41.0 26-27 37.424246756848895 39.0 35.0 41.0 34.0 41.0 28-29 37.37996326418103 39.0 35.0 41.0 34.0 41.0 30-31 37.24774952319861 39.0 35.0 41.0 34.0 41.0 32-33 36.852808555547256 39.0 35.0 41.0 33.0 41.0 34-35 36.50532875466604 38.0 35.0 41.0 32.5 41.0 36-37 36.27565603663621 38.0 35.0 41.0 31.5 41.0 38-39 36.223602033780125 38.0 35.0 41.0 31.0 41.0 40-41 36.09029944243648 38.0 35.0 41.0 31.0 41.0 42-43 36.03171748970186 38.0 35.0 41.0 31.0 41.0 44-45 35.884284317034066 38.0 35.0 41.0 31.0 41.0 46-47 35.767130286784976 37.0 35.0 40.0 31.0 41.0 48-49 35.71270322559039 37.0 35.0 40.0 31.0 41.0 50-51 35.48812096887073 36.5 35.0 40.0 30.0 41.0 52-53 35.29354907683866 36.0 35.0 40.0 30.0 41.0 54-55 35.147230945333355 36.0 35.0 40.0 29.5 41.0 56-57 34.877745203863185 35.5 34.5 40.0 29.0 41.0 58-59 34.64712918763004 35.0 34.0 39.0 28.0 41.0 60-61 34.299686311485054 35.0 34.0 39.0 27.5 41.0 62-63 33.850873871112064 35.0 33.5 38.5 26.0 40.0 64-65 33.522625846800125 35.0 33.5 37.5 26.0 40.0 66-67 33.260677903808485 35.0 34.0 37.0 25.0 40.0 68-69 32.923271256840735 35.0 33.5 36.5 24.0 39.0 70-71 32.65437502307796 35.0 33.0 36.0 23.5 39.0 72-73 32.40212111141739 35.0 33.0 36.0 23.0 38.5 74-75 32.14535336543209 35.0 33.0 35.0 22.5 37.0 76-77 30.23290105630507 33.0 30.0 34.5 19.0 35.5 78-79 31.147492423988716 34.0 31.5 35.0 19.0 36.0 80-81 31.441687683711297 35.0 32.5 35.0 19.0 36.0 82-83 31.311786891031666 35.0 32.5 35.0 19.0 36.0 84-85 31.127989293543926 35.0 32.0 35.0 18.0 35.5 86 30.735146595496385 34.0 31.0 35.0 17.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 5.0 11 24.0 12 18.0 13 34.0 14 134.0 15 380.0 16 1049.0 17 2332.0 18 5389.0 19 8931.0 20 11367.0 21 11693.0 22 9762.0 23 7933.0 24 7452.0 25 7636.0 26 8415.0 27 10266.0 28 12761.0 29 16409.0 30 21837.0 31 27742.0 32 36361.0 33 51302.0 34 171168.0 35 153873.0 36 90794.0 37 166297.0 38 225371.0 39 97633.0 40 159.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.273593403696424 22.804974706555686 29.88705324289349 15.0343786468544 2 31.38078763038511 25.365061127612748 29.963908217127756 13.29024302487439 3 29.732742194067825 24.06213316777312 33.0595750563961 13.145549581762959 4 26.518916198881783 26.71152592760519 32.07462918548325 14.694928688029773 5 24.190596901241786 32.05573745997315 29.674263716466115 14.079401922318944 6 22.97122189104455 40.24804835594759 26.342879665719504 10.437850087288359 7 85.81162717007963 4.227968169159945 7.906874097812768 2.053530562947659 8 86.03008421416003 4.115218916456496 7.710657766946522 2.1440391024369467 9 81.15309940224863 6.81622043552297 8.950212574847729 3.080467587380671 10-11 47.36022484588216 24.59427872680075 18.358420686095947 9.687075741221143 12-13 33.21032243881872 27.745590284844283 24.55709637613769 14.486990900199306 14-15 14.816436831651542 34.257181646516926 36.21943082665897 14.706950695172564 16-17 17.968392425792015 23.07688674668171 36.49988707900434 22.45483374852194 18-19 23.750376761116705 26.001025305466317 30.385193696002936 19.86340423741403 20-21 27.434220299846036 26.575848989850847 28.6811171192523 17.308813591050818 22-23 21.231122228605333 25.780722024574697 28.970332262515985 24.01782348430398 24-25 18.903575774281663 26.35404295806638 35.723651839238286 19.018729428413668 26-27 16.997443606052563 36.09663461084334 29.512567720395595 17.393354062708507 28-29 15.527280939708776 28.757456864609015 37.71436741486487 18.00089478081734 30-31 22.66358731540852 28.759947137517162 30.664147197455456 17.912318349618857 32-33 26.751241486916193 29.546701633533157 26.904393270767375 16.797663608783278 34-35 20.514352988456295 29.32695651725888 28.72491157384389 21.433778920440933 36-37 23.17426500453831 30.097953596769862 29.822349083021404 16.905432315670428 38-39 20.354159743278625 31.05696628084611 27.823175166655073 20.765698809220194 40-41 20.160648364019508 28.33222129767263 28.749513752746815 22.757616585561056 42-43 23.057866213952227 26.375124406306057 26.37405101281117 24.19295836693055 44-45 18.91263521537855 34.48233666600546 26.10505860299125 20.499969515624745 46-47 21.664987879240655 30.706052479496037 26.828697561507592 20.80026207975571 48-49 21.849869174800844 25.37485047628616 31.459875263088744 21.315405085824253 50-51 18.69739835178282 31.982145601963364 27.686510706885432 21.63394533936838 52-53 22.439806239593448 26.586926410718135 30.11671651506057 20.856550834627846 54-55 22.70918507107153 27.128217282322243 31.307839808472256 18.854757838133978 56-57 23.34656612833836 25.289580097051946 28.879351429888946 22.48450234472075 58-59 24.22859503096096 26.15580864742974 28.01853278272541 21.597063538883894 60-61 25.046778488507393 29.262166485907205 26.36052625477553 19.33052877080988 62-63 24.39836294611307 25.14076482292013 31.15468802462107 19.30618420634573 64-65 18.950332794919156 32.454953968593365 29.79684525358277 18.797867982904705 66-67 18.766567828593658 28.859257503664566 25.386228447332016 26.987946220409764 68-69 17.728939804951523 33.26382037060413 23.792024428718513 25.21521539572583 70-71 20.173056792820457 30.205722303657005 27.95584660262372 21.66537430089882 72-73 22.985905914054673 31.517366218675157 25.54822499358111 19.948502873689065 74-75 21.745063033959593 32.76314670884673 24.288318645016748 21.20347161217692 76-77 27.6560263316305 28.192680143336673 24.78993689304965 19.361356631983178 78-79 19.595528156828802 30.64641473691984 29.014083781367777 20.74397332488358 80-81 15.76295521544725 29.111762589402947 31.24803032293687 23.877251872212934 82-83 19.07347249665316 26.46133937181578 31.956427093825756 22.50876103770531 84-85 17.02835733870545 26.398910806152863 29.725142568123992 26.84758928701769 86 18.346613357652135 26.728957837962238 32.341689487012374 22.58273931737326 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 761.0 1 926.0 2 3303.5 3 3750.0 4 2151.5 5 2543.0 6 3126.5 7 3486.0 8 3553.5 9 3502.0 10 3220.0 11 3043.0 12 3000.5 13 2974.0 14 2976.0 15 2956.5 16 3021.0 17 3192.0 18 3451.5 19 3457.5 20 3592.5 21 3894.0 22 3635.5 23 3950.0 24 4666.0 25 5586.0 26 7268.5 27 11172.5 28 14183.0 29 14195.0 30 17380.0 31 21704.5 32 19863.0 33 18281.0 34 20266.0 35 23090.5 36 25329.0 37 25277.0 38 27020.0 39 30907.0 40 37392.0 41 47202.0 42 58218.0 43 63817.0 44 63946.0 45 67190.5 46 70969.0 47 73700.5 48 71455.0 49 57674.5 50 48208.0 51 42645.5 52 34138.0 53 29933.0 54 29046.0 55 29165.5 56 27616.0 57 26320.0 58 26545.5 59 21308.0 60 14907.5 61 13633.0 62 12316.0 63 9415.5 64 7495.0 65 6126.5 66 3561.0 67 2019.5 68 1520.5 69 1220.5 70 857.0 71 639.0 72 511.0 73 329.0 74 218.5 75 135.5 76 73.5 77 37.5 78 33.0 79 29.0 80 24.0 81 17.0 82 12.0 83 7.0 84 3.0 85 2.5 86 4.0 87 3.0 88 1.5 89 1.0 90 1.5 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1164531.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.255443367046258 #Duplication Level Percentage of deduplicated Percentage of total 1 80.39265100235242 13.87210836497807 2 8.213751679011505 2.834638538563283 3 2.5926823667548082 1.3421365124483113 4 1.1999540626510878 0.828229574845317 5 0.7377060512981158 0.6364722494850981 6 0.4589391493853463 0.4751519100683536 7 0.36543949417942356 0.4414074347126552 8 0.2812633748363287 0.3882659388570059 9 0.20340223338742563 0.3158816147052703 >10 2.401949414497934 10.574783330512217 >50 1.3063243618550637 16.544118176715017 >100 1.8378978906406325 49.4669367565521 >500 0.005024324468673134 0.638002828019319 >1k 0.002512162234336567 0.9116183906268704 >5k 5.024324468673135E-4 0.7302483789110917 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8423 0.7232954725979815 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 3462 0.29728706234527036 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 2758 0.23683354071295654 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1806 0.15508389214198678 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 1306 0.11214815234630937 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 1183 0.10158596035657273 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.587147959135481E-5 0.0 0.0 0.04774454265279327 0.0 2 8.587147959135481E-5 0.0 0.0 0.19441302979482727 0.0 3 8.587147959135481E-5 0.0 0.0 0.2920489020901977 0.0 4 8.587147959135481E-5 0.0 0.0 0.4515981111709349 0.0 5 8.587147959135481E-5 0.0 0.0 0.7481982016794744 0.0 6 8.587147959135481E-5 0.0 0.0 0.9931036614740183 0.0 7 8.587147959135481E-5 0.0 0.0 1.1499908546874236 0.0 8 8.587147959135481E-5 0.0 0.0 1.4650533133081043 0.0 9 8.587147959135481E-5 0.0 0.0 1.5741959638687162 0.0 10 8.587147959135481E-5 0.0 0.0 1.7601077171839994 0.0 11 8.587147959135481E-5 0.0 0.0 2.1158732571309824 0.0 12 8.587147959135481E-5 0.0 0.0 2.3799280568743986 0.0 13 8.587147959135481E-5 0.0 0.0 2.476876957333038 0.0 14 8.587147959135481E-5 0.0 0.0 2.5201561830470807 0.0 15 8.587147959135481E-5 0.0 0.0 2.5849032786589623 0.0 16 8.587147959135481E-5 0.0 0.0 2.727449934780611 0.0 17 8.587147959135481E-5 0.0 0.0 2.892494918555195 0.0 18 8.587147959135481E-5 0.0 0.0 3.150710457686399 0.0 19 8.587147959135481E-5 0.0 0.0 3.280376391869345 0.0 20 8.587147959135481E-5 0.0 0.0 3.424211120184864 0.0 21 8.587147959135481E-5 0.0 0.0 3.5895995898778135 0.0 22 8.587147959135481E-5 0.0 0.0 3.7618577779380713 0.0 23 8.587147959135481E-5 0.0 0.0 3.9543816351818886 0.0 24 8.587147959135481E-5 0.0 0.0 4.0930640747219265 0.0 25 8.587147959135481E-5 0.0 0.0 4.205383970027419 0.0 26 8.587147959135481E-5 0.0 0.0 4.3220833107920695 0.0 27 8.587147959135481E-5 0.0 0.0 4.4327716479853265 0.0 28 8.587147959135481E-5 0.0 0.0 4.553163462372406 0.0 29 8.587147959135481E-5 0.0 0.0 4.682829396555351 0.0 30 8.587147959135481E-5 0.0 0.0 4.84813199476871 0.0 31 8.587147959135481E-5 0.0 0.0 5.020218439869785 0.0 32 8.587147959135481E-5 0.0 0.0 5.16826087068528 0.0 33 8.587147959135481E-5 0.0 0.0 5.316303301500776 0.0 34 8.587147959135481E-5 0.0 0.0 5.460567387214252 0.0 35 8.587147959135481E-5 0.0 0.0 5.646393269049944 0.0 36 8.587147959135481E-5 0.0 0.0 5.8214852159367165 0.0 37 8.587147959135481E-5 0.0 0.0 6.004391467466302 0.0 38 8.587147959135481E-5 0.0 0.0 6.170638651955165 0.0 39 8.587147959135481E-5 0.0 0.0 6.345215369964389 0.0 40 8.587147959135481E-5 0.0 0.0 6.52717703521847 0.0 41 8.587147959135481E-5 0.0 0.0 6.725883638992865 0.0 42 8.587147959135481E-5 0.0 0.0 6.9208977691448315 0.0 43 8.587147959135481E-5 0.0 0.0 7.092297242409176 0.0 44 8.587147959135481E-5 0.0 0.0 7.266788088938809 0.0 45 1.7174295918270961E-4 0.0 0.0 7.449179111590847 0.0 46 1.7174295918270961E-4 0.0 0.0 7.665231754242695 0.0 47 1.7174295918270961E-4 0.0 0.0 7.893134661078151 0.0 48 2.576144387740644E-4 0.0 0.0 8.096220710311705 0.0 49 2.576144387740644E-4 0.0 0.0 8.293381627453455 0.0 50 2.576144387740644E-4 0.0 0.0 8.50788858347266 0.0 51 2.576144387740644E-4 0.0 0.0 8.712348576379675 0.0 52 2.576144387740644E-4 0.0 0.0 8.947207073062032 0.0 53 2.576144387740644E-4 0.0 0.0 9.155187796632292 0.0 54 2.576144387740644E-4 0.0 0.0 9.384636390100392 0.0 55 2.576144387740644E-4 0.0 0.0 9.61520131280318 0.0 56 2.576144387740644E-4 0.0 0.0 9.851777239077363 0.0 57 2.576144387740644E-4 0.0 0.0 10.071865841270006 0.0 58 2.576144387740644E-4 0.0 0.0 10.283453166983103 0.0 59 2.576144387740644E-4 0.0 0.0 10.504056998053294 0.0 60 2.576144387740644E-4 0.0 0.0 10.74913420080702 0.0 61 2.576144387740644E-4 0.0 0.0 11.000136535652551 0.0 62 2.576144387740644E-4 0.0 0.0 11.28411351866116 0.0 63 2.576144387740644E-4 0.0 0.0 11.61179908478177 0.0 64 2.576144387740644E-4 0.0 0.0 11.89569019631079 0.0 65 2.576144387740644E-4 0.0 0.0 12.13655969656454 0.0 66 2.576144387740644E-4 0.0 0.0 12.362144073451029 0.0 67 2.576144387740644E-4 0.0 0.0 12.61709649635776 0.0 68 2.576144387740644E-4 0.0 0.0 12.895663576152117 0.0 69 2.576144387740644E-4 0.0 0.0 13.188485321558636 0.0 70 2.576144387740644E-4 0.0 0.0 13.426864548904238 0.0 71 2.576144387740644E-4 0.0 0.0 13.662495888902914 0.0 72 2.576144387740644E-4 0.0 0.0 13.937542238034023 0.0 73 2.576144387740644E-4 0.0 0.0 14.192924018338713 0.0 74 2.576144387740644E-4 0.0 0.0 14.512537665377735 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGAACG 25 1.2848159E-6 80.00001 1 TGCGTTG 25 1.2848159E-6 80.00001 1 CGTATGG 70 0.0 74.28571 2 CGGGACG 95 0.0 71.57895 6 CGTTTTT 5080 0.0 70.86614 1 CGTGCGG 130 0.0 70.769226 2 ATAGCCG 40 3.7143764E-9 70.00001 1 CGTAAGG 260 0.0 69.23077 2 TACGGGA 360 0.0 68.88889 4 TAGTAAG 235 0.0 68.085106 1 ACGTGCG 65 0.0 67.69231 1 AACGGGA 420 0.0 67.61905 4 AAGTACT 4170 0.0 67.33813 80 ATCGTAG 60 0.0 66.666664 1 TATAGCG 30 3.795616E-6 66.666664 1 TGCAACG 30 3.795616E-6 66.666664 1 TAGTAGG 545 0.0 66.055046 2 TAGCACG 55 9.094947E-12 65.454544 1 TAAGGGA 1315 0.0 65.095055 4 GTGCGGG 505 0.0 64.95049 3 >>END_MODULE