##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547260_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1723874 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05637999064897 33.0 31.0 34.0 31.0 34.0 2 32.496291492301644 34.0 31.0 34.0 31.0 34.0 3 32.587669980520616 34.0 31.0 34.0 31.0 34.0 4 36.148780595333534 37.0 35.0 37.0 35.0 37.0 5 36.134729684420094 37.0 35.0 37.0 35.0 37.0 6 36.182406022713955 37.0 36.0 37.0 35.0 37.0 7 36.35887019584958 37.0 37.0 37.0 35.0 37.0 8 36.34660885888412 37.0 37.0 37.0 35.0 37.0 9 38.12841251738816 39.0 39.0 39.0 37.0 39.0 10-11 37.72946369630263 39.0 37.5 39.0 35.0 39.0 12-13 37.15392424272308 39.0 36.0 39.0 34.5 39.0 14-15 38.34693486878972 40.0 37.0 41.0 34.0 41.0 16-17 38.4728628658475 40.0 37.0 41.0 34.0 41.0 18-19 38.28093961623645 40.0 36.0 41.0 34.0 41.0 20-21 38.04233865120072 40.0 35.0 41.0 34.0 41.0 22-23 37.85545173255122 40.0 35.0 41.0 34.0 41.0 24-25 37.82391346467317 40.0 35.0 41.0 34.0 41.0 26-27 37.8126118846273 40.0 35.0 41.0 34.0 41.0 28-29 37.71634034738038 40.0 35.0 41.0 34.0 41.0 30-31 37.52281460245935 40.0 35.0 41.0 33.5 41.0 32-33 37.095076554318936 40.0 35.0 41.0 32.5 41.0 34-35 36.64082525753042 40.0 35.0 41.0 31.0 41.0 36-37 36.391842733285614 39.5 35.0 41.0 30.0 41.0 38-39 36.27939338954007 39.0 35.0 41.0 30.0 41.0 40-41 36.14165536460321 39.0 35.0 41.0 30.0 41.0 42-43 36.0625695381449 39.0 35.0 41.0 30.0 41.0 44-45 35.93562145493232 39.0 35.0 41.0 29.0 41.0 46-47 35.79887828228745 39.0 35.0 41.0 29.0 41.0 48-49 35.68177488609956 38.0 35.0 40.5 28.0 41.0 50-51 35.451288203198146 38.0 35.0 40.0 27.5 41.0 52-53 35.26578479633662 38.0 35.0 40.0 27.0 41.0 54-55 35.05907537325814 37.0 35.0 40.0 26.5 41.0 56-57 34.79793302758786 37.0 34.5 40.0 26.0 41.0 58-59 34.54720617632147 36.0 34.0 40.0 26.0 41.0 60-61 34.178472730605606 36.0 34.0 39.5 25.0 41.0 62-63 33.77923995605247 35.0 33.5 39.0 23.5 40.5 64-65 33.392536519490406 35.0 33.0 38.5 22.5 40.0 66-67 33.03162412102044 35.0 33.0 38.0 21.0 40.0 68-69 32.522760654200944 35.0 33.0 37.0 19.0 39.5 70-71 32.17626781307683 35.0 32.5 36.5 18.5 39.0 72-73 31.893156344373196 35.0 32.0 36.0 18.0 39.0 74-75 31.592298509055766 35.0 32.0 36.0 17.0 38.0 76-77 29.685291384405126 33.0 29.0 34.5 12.0 36.0 78-79 30.69894435440177 34.0 31.0 35.0 15.0 36.0 80-81 30.803302909609403 34.5 31.0 35.0 12.5 36.0 82-83 30.59220424462577 34.0 31.0 35.0 10.5 36.0 84-85 30.356701533870805 34.0 31.0 35.0 10.0 36.0 86 29.93289068690635 34.0 30.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 5.0 10 16.0 11 24.0 12 28.0 13 72.0 14 213.0 15 695.0 16 1850.0 17 4493.0 18 10977.0 19 19492.0 20 22761.0 21 20936.0 22 16977.0 23 13482.0 24 12061.0 25 12519.0 26 14337.0 27 17508.0 28 21335.0 29 27069.0 30 34513.0 31 44136.0 32 54510.0 33 70694.0 34 170454.0 35 161422.0 36 152000.0 37 271309.0 38 386353.0 39 161347.0 40 281.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.232271036050196 23.771690970453758 28.660215305759007 16.33582268773704 2 33.02283113499014 24.630918501004135 29.04643842879468 13.299811935211043 3 28.34569115840253 24.335073213007448 33.96379317745961 13.35544245113042 4 25.36426676195592 27.006614172497528 33.75948590210189 13.86963316344466 5 24.24910405284841 30.933293268533546 30.804397537174992 14.013205141443052 6 22.487374367268142 39.34353670859935 27.56703796217125 10.602050961961258 7 84.76164731297067 3.7677927737178005 9.332178569895481 2.13838134341605 8 84.95255453704853 3.5199208294805766 9.37406098125501 2.153463652215881 9 80.3393983551002 5.847875192734504 10.826487318678742 2.986239133486554 10-11 37.16338897158377 26.34310860306496 23.385931918458077 13.107570506893197 12-13 28.20716595296408 24.174243593209248 30.03026903358366 17.588321420243012 14-15 17.967496464358764 29.659998352547806 34.85071994820967 17.521785234883755 16-17 22.09743867591251 25.237227314757344 33.41894477206571 19.24638923726444 18-19 23.431874951417562 26.61018148658197 31.16689502829093 18.79104853370954 20-21 25.966746989629176 26.584976628222247 30.54941950513785 16.898856877010733 22-23 22.36509164822951 24.017532603891002 32.666598602914135 20.95077714496535 24-25 20.4821814123306 26.19243053726664 34.26984802833618 19.055540022066577 26-27 19.20453583034491 31.265307093209827 30.419131560659306 19.111025515785958 28-29 18.3837681872341 27.3747675294134 34.50458096125355 19.736883322098947 30-31 21.5445270361987 27.6072671204508 30.823221418734782 20.02498442461572 32-33 23.60915008869558 27.447771704892588 29.463609289310007 19.47946891710183 34-35 20.328834938052317 28.095933925565326 30.61000978029717 20.96522135608519 36-37 22.477077791068258 28.221929212923914 29.579888089268707 19.72110490673912 38-39 20.72407844192789 29.211908758992827 28.913134022556175 21.15087877652311 40-41 21.214601531202394 27.361976571373546 29.22841228535264 22.195009612071416 42-43 21.067433002644044 27.253180916934767 29.229079387472634 22.45030669294856 44-45 20.201505446453744 30.07687916866314 28.11684612680509 21.604769258078026 46-47 21.02047481428457 29.214200109752802 28.371969181042232 21.393355894920393 48-49 21.19815601372258 26.465768379823583 30.73754230297574 21.598533303478096 50-51 19.86865049301747 29.248657384472416 29.18673290507311 21.695959217437004 52-53 21.620402651237853 26.59710048414211 30.53752768473798 21.244969179882055 54-55 21.564076028758482 26.833544679019468 30.604179887857235 20.99819940436482 56-57 21.55998640271853 26.37315720290462 29.764704380946633 22.302152013430216 58-59 22.713638003705608 27.408267657613028 28.750216083077994 21.12787825560337 60-61 22.812195090824503 28.783223135797627 27.77415866820893 20.630423105168937 62-63 21.679310668877193 27.79916049548865 29.499719817109604 21.021809018524557 64-65 20.179810125333987 30.394245751139586 28.987936473315333 20.438007650211095 66-67 19.85330714425764 29.199175809832965 26.607658100301997 24.339858945607393 68-69 19.36086976194316 30.746040603895647 26.457647136623674 23.435442497537522 70-71 19.9729214548163 29.6876685883075 28.36399296004232 21.975416996833875 72-73 21.393471912680393 30.036330961543594 27.34176047669377 21.22843664908224 74-75 20.433279926491146 30.757497357695517 26.37878406426456 22.43043865154878 76-77 22.788266427824773 28.854893107036826 26.838098376099413 21.518742089038987 78-79 19.34984807474328 29.89360011230519 28.97415936431549 21.78239244863604 80-81 18.00789964927831 28.840593918116987 29.63119694362813 23.520309488976572 82-83 19.428015040542405 28.753348562597964 29.28917658715196 22.52945980970767 84-85 18.254756438115546 28.53642435584039 28.636953744879268 24.571865461164798 86 18.870346672668653 29.07764720623433 29.380975639750933 22.671030481346087 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 445.0 1 577.0 2 4038.5 3 4906.0 4 2573.5 5 3054.0 6 3625.0 7 3845.0 8 4142.0 9 4438.0 10 4514.0 11 4565.0 12 4724.0 13 5045.0 14 5181.0 15 5374.5 16 5634.5 17 5807.5 18 6090.0 19 6582.0 20 6890.5 21 6883.0 22 7466.0 23 8770.0 24 9886.0 25 11052.5 26 12543.5 27 14067.5 28 16949.0 29 19026.0 30 21548.5 31 24950.5 32 26404.5 33 29549.5 34 34239.5 35 38134.5 36 39910.0 37 43896.0 38 49383.0 39 55369.0 40 63617.5 41 70692.0 42 77325.0 43 80647.0 44 83980.0 45 89671.0 46 93248.5 47 94293.5 48 90369.5 49 81944.5 50 77269.0 51 72301.0 52 63006.5 53 55575.5 54 51187.0 55 48034.5 56 42991.5 57 39817.0 58 36171.5 59 28094.0 60 21132.5 61 17348.0 62 14554.5 63 11021.5 64 9027.0 65 7977.0 66 5861.5 67 4403.5 68 3615.0 69 2736.5 70 1943.5 71 1633.0 72 1364.0 73 984.5 74 650.5 75 289.5 76 147.5 77 116.0 78 68.5 79 48.0 80 50.5 81 42.0 82 21.0 83 8.5 84 5.0 85 3.0 86 2.0 87 2.5 88 2.0 89 1.0 90 2.5 91 2.5 92 1.0 93 1.0 94 0.5 95 1.0 96 1.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1723874.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.91739628562963 #Duplication Level Percentage of deduplicated Percentage of total 1 79.24900912587407 18.16180947381135 2 7.259819272715497 3.3275231046974505 3 2.5274165900591905 1.737654227197836 4 1.3585074049558745 1.2453381022534442 5 0.8911201784476636 1.0211077133803046 6 0.6073220663038456 0.8350944279895597 7 0.5009784005671473 0.803678437543675 8 0.42940481879871456 0.7872672319495299 9 0.32609138425462125 0.6725848930463413 >10 4.548035917242621 25.564708436164242 >50 1.7540767404314423 28.68368370849342 >100 0.5456741648554231 15.851989369286091 >500 0.002289541944542332 0.35918862786982814 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 2.543935493935924E-4 0.948372246316912 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16267 0.9436304509494312 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.8008879999350304E-5 0.0 0.0 0.05267206303941007 0.0 2 5.8008879999350304E-5 0.0 0.0 0.15540578951825945 0.0 3 5.8008879999350304E-5 0.0 0.0 0.24015676319731025 0.0 4 5.8008879999350304E-5 0.0 0.0 0.37937807519575095 0.0 5 5.8008879999350304E-5 0.0 0.0 0.705445989672099 0.0 6 5.8008879999350304E-5 0.0 0.0 1.0864483135078318 0.0 7 5.8008879999350304E-5 0.0 0.0 1.3376847727850179 0.0 8 5.8008879999350304E-5 0.0 0.0 1.7677046002202017 0.0 9 5.8008879999350304E-5 0.0 0.0 1.952056820858137 0.0 10 5.8008879999350304E-5 0.0 0.0 2.22945528501503 0.0 11 5.8008879999350304E-5 0.0 0.0 2.591372687330977 0.0 12 5.8008879999350304E-5 0.0 0.0 2.866334778527897 0.0 13 5.8008879999350304E-5 0.0 0.0 2.985020947006568 0.0 14 5.8008879999350304E-5 0.0 0.0 3.040535445165946 0.0 15 5.8008879999350304E-5 0.0 0.0 3.113568625085128 0.0 16 5.8008879999350304E-5 0.0 0.0 3.255284318923541 0.0 17 5.8008879999350304E-5 0.0 0.0 3.4330815361215494 0.0 18 5.8008879999350304E-5 0.0 0.0 3.65983824803901 0.0 19 5.8008879999350304E-5 0.0 0.0 3.8075288565173557 0.0 20 5.8008879999350304E-5 0.0 0.0 3.9690835873155463 0.0 21 5.8008879999350304E-5 0.0 0.0 4.176175288913226 0.0 22 5.8008879999350304E-5 0.0 0.0 4.410763199630599 0.0 23 5.8008879999350304E-5 0.0 0.0 4.6629278009877755 0.0 24 5.8008879999350304E-5 0.0 0.0 4.844843648665738 0.0 25 5.8008879999350304E-5 0.0 0.0 5.016839977863811 0.0 26 5.8008879999350304E-5 0.0 0.0 5.168707225702111 0.0 27 5.8008879999350304E-5 0.0 0.0 5.331190098580291 0.0 28 5.8008879999350304E-5 0.0 0.0 5.508117182578309 0.0 29 5.8008879999350304E-5 0.0 0.0 5.702388921696134 0.0 30 5.8008879999350304E-5 0.0 0.0 5.91429536033376 0.0 31 5.8008879999350304E-5 0.0 0.0 6.11245369441154 0.0 32 5.8008879999350304E-5 0.0 0.0 6.2987782169694535 0.0 33 5.8008879999350304E-5 0.0 0.0 6.485392783927364 0.0 34 5.8008879999350304E-5 0.0 0.0 6.672413413045269 0.0 35 5.8008879999350304E-5 0.0 0.0 6.888612508802847 0.0 36 5.8008879999350304E-5 0.0 0.0 7.081550043680687 0.0 37 5.8008879999350304E-5 0.0 0.0 7.29113612711834 0.0 38 5.8008879999350304E-5 0.0 0.0 7.500548183915994 0.0 39 5.8008879999350304E-5 0.0 0.0 7.7804990387928585 0.0 40 5.8008879999350304E-5 0.0 0.0 8.003253137990363 0.0 41 5.8008879999350304E-5 0.0 0.0 8.231924142947802 0.0 42 5.8008879999350304E-5 0.0 0.0 8.463321565265211 0.0 43 5.8008879999350304E-5 0.0 0.0 8.680854865262775 0.0 44 5.8008879999350304E-5 0.0 0.0 8.886728380380468 0.0 45 5.8008879999350304E-5 0.0 0.0 9.102985485018047 0.0 46 5.8008879999350304E-5 0.0 0.0 9.314717897015676 0.0 47 5.8008879999350304E-5 0.0 0.0 9.548609701173056 0.0 48 1.1601775999870061E-4 0.0 0.0 9.774264244370528 0.0 49 1.1601775999870061E-4 0.0 0.0 10.006705826527925 0.0 50 1.1601775999870061E-4 0.0 0.0 10.243846127965268 0.0 51 1.1601775999870061E-4 0.0 0.0 10.477969967642647 0.0 52 1.1601775999870061E-4 0.0 0.0 10.744172717959666 0.0 53 1.1601775999870061E-4 0.0 0.0 10.97493204259708 0.0 54 1.1601775999870061E-4 0.0 0.0 11.211782299634429 0.0 55 1.1601775999870061E-4 0.0 0.0 11.442251579871847 0.0 56 2.3203551999740121E-4 0.0 0.0 11.66773209642932 0.0 57 2.3203551999740121E-4 0.0 0.0 11.912413552266582 0.0 58 2.3203551999740121E-4 0.0 0.0 12.139518317464038 0.0 59 2.3203551999740121E-4 0.0 0.0 12.376484592261383 0.0 60 2.3203551999740121E-4 0.0 0.0 12.61704741761869 0.0 61 2.3203551999740121E-4 0.0 0.0 12.865383432895907 0.0 62 2.900443999967515E-4 0.0 0.0 13.144290127932784 0.0 63 2.900443999967515E-4 0.0 0.0 13.438801211689485 0.0 64 2.900443999967515E-4 0.0 0.0 13.697752852006586 0.0 65 3.480532799961018E-4 0.0 0.0 13.948583249123775 0.0 66 3.480532799961018E-4 0.0 0.0 14.177544298481212 0.0 67 3.480532799961018E-4 0.0 0.0 14.420137434638495 0.0 68 3.480532799961018E-4 0.0 0.0 14.697013818875394 0.0 69 3.480532799961018E-4 0.0 0.0 15.045183116631494 0.0 70 3.480532799961018E-4 0.0 0.0 15.309007502868539 0.0 71 3.480532799961018E-4 0.0 0.0 15.563550468305689 0.0 72 3.480532799961018E-4 0.0 0.0 15.81339471446289 0.0 73 4.060621599954521E-4 0.0 0.0 16.062832898460098 0.0 74 4.060621599954521E-4 0.0 0.0 16.333966403577058 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGAACG 70 0.0 74.28571 1 CGTTTTT 10065 0.0 73.76055 1 TATAGCG 165 0.0 72.72727 1 CGAGGGA 1095 0.0 67.945206 4 TACGGGA 745 0.0 66.04027 4 GGGCGAT 1235 0.0 62.51012 7 GTACGCG 45 9.427822E-9 62.222225 1 TAGCGGG 1190 0.0 62.184875 3 ATAGCGG 430 0.0 61.395348 2 TTGCGGG 1075 0.0 61.395348 3 TCGATAG 125 0.0 60.8 1 CGTAAGG 245 0.0 60.40816 2 TGCGGGA 1165 0.0 60.085835 4 GCGAGGG 1485 0.0 60.067337 3 GTACGGG 755 0.0 59.86755 3 AGGGATT 2295 0.0 59.25926 6 ACGGGAT 655 0.0 58.625954 5 TAGGGAT 2115 0.0 58.439716 5 ATAGGGA 1975 0.0 58.329113 4 TAGGGAC 1740 0.0 58.16092 5 >>END_MODULE