##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547259_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2208812 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.048926753385985 33.0 31.0 34.0 31.0 34.0 2 32.46408476592847 34.0 31.0 34.0 31.0 34.0 3 32.53599219852119 34.0 31.0 34.0 31.0 34.0 4 36.091290702875575 37.0 35.0 37.0 35.0 37.0 5 36.06032926297032 37.0 35.0 37.0 35.0 37.0 6 36.11200817453002 37.0 36.0 37.0 35.0 37.0 7 36.365454823678974 37.0 37.0 37.0 35.0 37.0 8 36.37071511744775 37.0 37.0 37.0 35.0 37.0 9 38.1847957182413 39.0 39.0 39.0 37.0 39.0 10-11 37.67471314896876 39.0 37.5 39.0 35.0 39.0 12-13 36.90295099809309 39.0 35.0 39.0 33.5 39.0 14-15 38.02388003143771 40.0 35.0 41.0 33.0 41.0 16-17 38.198986830929925 40.0 35.0 41.0 34.0 41.0 18-19 38.021279991235104 40.0 36.0 41.0 34.0 41.0 20-21 37.780749108570575 40.0 35.0 41.0 34.0 41.0 22-23 37.583630929205384 39.0 35.0 41.0 33.5 41.0 24-25 37.527893048389814 39.0 35.0 41.0 34.0 41.0 26-27 37.48702130375967 39.0 35.0 41.0 34.0 41.0 28-29 37.41598515401039 39.0 35.0 41.0 33.5 41.0 30-31 37.22045606416481 39.0 35.0 41.0 33.0 41.0 32-33 36.7984190143842 39.0 35.0 41.0 32.5 41.0 34-35 36.388451574873734 39.0 35.0 41.0 31.0 41.0 36-37 36.14570683245111 39.0 35.0 41.0 30.0 41.0 38-39 36.0306481493219 38.5 35.0 41.0 30.0 41.0 40-41 35.89631304067526 38.0 35.0 41.0 29.5 41.0 42-43 35.856288810455574 38.0 35.0 41.0 30.0 41.0 44-45 35.734392062339396 38.0 35.0 41.0 29.0 41.0 46-47 35.6123248606038 38.0 35.0 40.5 29.0 41.0 48-49 35.49725440644111 38.0 35.0 40.0 29.0 41.0 50-51 35.27486562912552 37.5 35.0 40.0 27.5 41.0 52-53 35.093188782024 37.0 35.0 40.0 27.0 41.0 54-55 34.90904431884651 37.0 35.0 40.0 27.0 41.0 56-57 34.632712743320845 36.0 34.0 40.0 26.0 41.0 58-59 34.3874777482194 36.0 34.0 40.0 25.5 41.0 60-61 34.01101383911352 35.0 34.0 39.0 25.0 41.0 62-63 33.60433821438855 35.0 33.5 39.0 23.5 40.0 64-65 33.18864212979647 35.0 33.0 38.0 22.0 40.0 66-67 32.81606266173853 35.0 33.0 37.5 20.0 40.0 68-69 32.30475273585982 35.0 32.5 37.0 18.5 39.5 70-71 31.952484412435282 35.0 32.0 36.5 17.5 39.0 72-73 31.636334826141834 35.0 32.0 36.0 15.0 38.5 74-75 31.322118858463284 35.0 32.0 35.5 13.5 37.5 76-77 29.407946896340658 33.0 29.0 34.5 11.0 35.5 78-79 30.367750401573335 34.0 30.5 35.0 11.0 36.0 80-81 30.49270195924325 34.5 31.0 35.0 10.0 36.0 82-83 30.27580459541147 34.5 31.0 35.0 10.0 36.0 84-85 30.03078917535761 34.0 31.0 35.0 10.0 35.5 86 29.629984806312173 34.0 30.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 9.0 11 11.0 12 28.0 13 85.0 14 307.0 15 958.0 16 2523.0 17 6697.0 18 15899.0 19 25780.0 20 26972.0 21 23792.0 22 19131.0 23 15914.0 24 15792.0 25 17479.0 26 20784.0 27 25427.0 28 31621.0 29 39620.0 30 51151.0 31 63215.0 32 77500.0 33 98835.0 34 249135.0 35 247984.0 36 177546.0 37 311329.0 38 450023.0 39 192971.0 40 289.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.51047893618832 24.50443949054967 30.51291825651074 15.472163316751267 2 31.845670885525795 24.606847481813755 30.958768786116696 12.588712846543753 3 26.9759943354165 23.893749219037204 35.99129305708227 13.138963388464026 4 24.48397600157913 26.469115524544417 35.01203361807161 14.03487485580484 5 23.67603037288823 30.65100153385621 32.81492494607961 12.858043147175948 6 21.627689454783837 40.311488709767964 28.232054153997716 9.828767681450481 7 86.51071254592966 3.2235880645342387 8.84991570129101 1.4157836882450838 8 87.2671825397544 2.596463619357374 8.538073860518686 1.598279980369538 9 83.34928459280373 4.885748538128189 9.645728110857782 2.119238758210296 10-11 40.605289178074 26.23731671142678 21.61818208158956 11.539212028909658 12-13 28.447848888904986 26.94688366415974 28.691418735501255 15.91384871143402 14-15 16.46274105718368 32.33670407440742 35.57871833365628 15.621836534752617 16-17 20.311031450390526 25.68650025443542 33.9863465066289 20.016121788545156 18-19 22.57254125747234 28.321129186186965 31.048432369979878 18.05789718636081 20-21 25.099057774043242 27.99120069974267 30.58123552389248 16.32850600232161 22-23 20.53146668888072 26.264254268810568 31.10606516081948 22.098213881489233 24-25 18.696249386548065 28.53142322660326 34.60955481951384 18.16277256733484 26-27 17.98487150558762 34.106048862465435 30.098238329020305 17.81084130292664 28-29 16.39204694650337 28.978405586351396 35.95339938392222 18.67614808322302 30-31 21.50909629248664 29.522883794546573 31.122046602427005 17.845973310539783 32-33 24.027124082991218 29.195309514798 29.7068741024587 17.070692299752082 34-35 18.840331363647064 30.322318060568303 30.18638526049297 20.650965315291657 36-37 22.336599946034337 30.07865766756066 30.02145497217509 17.56328741422991 38-39 19.909186476712367 31.41718263030081 28.559379431115005 20.114251461871813 40-41 20.075497597803707 28.77060157224789 28.95997939163677 22.193921438311637 42-43 21.543300199383197 27.74111151152746 28.86026515611107 21.85532313297827 44-45 19.031157925617933 32.2866545455204 27.72207412853606 20.960113400325607 46-47 20.888468552325865 30.795174057366587 28.098045465164077 20.21831192514347 48-49 21.38348578330795 27.799898769112087 30.60092936836634 20.215686079213622 50-51 19.097686901375038 31.45994317307222 27.912380048641534 21.52998987691121 52-53 21.58388762828163 27.97334042009913 30.140636686146216 20.302135265473023 54-55 21.509911210189006 28.456586617602586 30.470202986945015 19.563299185263393 56-57 21.953067984056588 26.691452237673463 29.618704534383188 21.736775243886758 58-59 22.611793126803008 28.6938861252112 28.56261646532163 20.131704282664163 60-61 23.340488008938742 30.023944998487874 26.898961975940004 19.736605016633376 62-63 21.58300480077073 28.26379067118433 30.32510236271806 19.828102165326882 64-65 19.10090129897882 32.04279042308716 29.725526663201755 19.130781614732264 66-67 18.225838142856883 31.12555527586775 26.41845480738062 24.230151773894747 68-69 17.734601224549667 33.24775942905055 25.836264018848144 23.181375327551642 70-71 19.091756111430037 31.04605552668131 28.19119508586516 21.67099327602349 72-73 21.40772958495336 31.180449037763285 27.167930090926706 20.243891286356646 74-75 20.385256871114425 32.5748184997184 25.452641510459017 21.587283118708157 76-77 24.157035546710176 30.008393652334377 26.35215219765195 19.482418603303493 78-79 18.915711251115987 31.22993265157922 29.042897267852585 20.811458829452214 80-81 17.065033149041202 30.252665233618796 30.580805428438456 22.101496188901546 82-83 18.5120327126075 28.914321363701394 30.701277428771668 21.872368494919442 84-85 16.884370421747075 28.75654424188206 30.122550040474245 24.23653529589662 86 18.256058007652985 28.90612691347204 30.67775799841725 22.16005708045773 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 935.0 1 1299.5 2 9563.0 3 10468.0 4 4078.0 5 6412.5 6 9714.5 7 11286.0 8 11998.5 9 12132.0 10 10523.0 11 8857.5 12 8091.5 13 7901.5 14 7842.0 15 8100.0 16 8292.5 17 8304.5 18 8608.5 19 8992.5 20 9733.0 21 10316.0 22 9928.5 23 9880.5 24 10434.0 25 11678.0 26 12843.0 27 14713.0 28 18854.0 29 21260.0 30 22515.0 31 26420.5 32 32099.0 33 36934.5 34 41771.5 35 48908.5 36 53016.0 37 56991.5 38 64542.0 39 74284.0 40 87651.0 41 101312.5 42 114070.5 43 120367.0 44 124306.0 45 127159.5 46 124614.5 47 127217.0 48 128136.0 49 113502.5 50 102012.0 51 91116.5 52 73839.0 53 62703.0 54 55675.5 55 51857.0 56 46553.0 57 42794.0 58 37453.0 59 26995.5 60 18908.0 61 14769.5 62 11628.5 63 7842.5 64 6030.0 65 4924.5 66 3250.0 67 2315.0 68 1549.0 69 977.0 70 671.0 71 537.0 72 476.0 73 343.5 74 231.0 75 130.5 76 75.0 77 63.5 78 55.5 79 63.0 80 48.0 81 21.5 82 10.5 83 9.0 84 6.5 85 4.0 86 2.0 87 2.0 88 1.5 89 0.5 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2208812.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.748658247426395 #Duplication Level Percentage of deduplicated Percentage of total 1 77.64501966040791 16.110299775485075 2 9.060523959271274 3.759874303470767 3 3.204932843975371 1.9949416885679199 4 1.7255074313303789 1.432078559842744 5 1.1106187430419643 1.1521924371281993 6 0.7599228977944994 0.9460428300439204 7 0.544396014288592 0.7906840796214537 8 0.447681476733314 0.7431031971554163 9 0.3487809235796822 0.6513062567918911 >10 2.9952557835169706 13.921908598963896 >50 0.9593378720832456 14.390132830784088 >100 1.193617090165882 41.904778398137246 >500 0.002863447477093171 0.4130096212692963 >1k 0.001321591143273771 0.432021683065028 >5k 0.0 0.0 >10k+ 2.2026519054562852E-4 1.3576257396730902 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29706 1.3448858481391808 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2300 0.10412837308018971 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC 2236 0.10123088791621922 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07293513436181984 0.0 2 0.0 0.0 0.0 0.22034469207881885 0.0 3 0.0 0.0 0.0 0.33502172208408865 0.0 4 0.0 0.0 0.0 0.5372118586824048 0.0 5 0.0 0.0 0.0 1.0116297810768866 0.0 6 0.0 0.0 0.0 1.432308408320853 0.0 7 0.0 0.0 0.0 1.735186154367144 0.0 8 0.0 0.0 0.0 2.316539388594412 0.0 9 0.0 0.0 0.0 2.516058406057193 0.0 10 0.0 0.0 0.0 2.8442891472882255 0.0 11 0.0 0.0 0.0 3.3838099394606695 0.0 12 0.0 0.0 0.0 3.766640166750271 0.0 13 0.0 0.0 0.0 3.9026861498398233 0.0 14 0.0 0.0 0.0 3.956968723458583 0.0 15 0.0 0.0 0.0 4.034204812360672 0.0 16 0.0 0.0 0.0 4.213486706881346 0.0 17 0.0 0.0 0.0 4.453706336256775 0.0 18 0.0 0.0 0.0 4.745175234469932 0.0 19 0.0 0.0 0.0 4.9400763849526355 0.0 20 0.0 0.0 0.0 5.134388983761407 0.0 21 0.0 0.0 0.0 5.3871945643178325 0.0 22 0.0 0.0 0.0 5.65525721519079 0.0 23 0.0 0.0 0.0 5.9700870875384595 0.0 24 0.0 0.0 0.0 6.1787512925500225 0.0 25 0.0 0.0 0.0 6.3787683152753605 0.0 26 0.0 0.0 0.0 6.5542472605183235 0.0 27 0.0 0.0 0.0 6.743308167467399 0.0 28 4.527320568703901E-5 0.0 0.0 6.947943057172815 0.0 29 4.527320568703901E-5 0.0 0.0 7.182141350191868 0.0 30 4.527320568703901E-5 0.0 0.0 7.44585777331887 0.0 31 4.527320568703901E-5 0.0 0.0 7.685398304608993 0.0 32 4.527320568703901E-5 0.0 0.0 7.910994688547508 0.0 33 4.527320568703901E-5 0.0 0.0 8.131203561009267 0.0 34 9.054641137407801E-5 0.0 0.0 8.3672127822558 0.0 35 9.054641137407801E-5 0.0 0.0 8.626718797253908 0.0 36 9.054641137407801E-5 0.0 0.0 8.87069610270136 0.0 37 9.054641137407801E-5 0.0 0.0 9.132194138749698 0.0 38 9.054641137407801E-5 0.0 0.0 9.412525828363844 0.0 39 9.054641137407801E-5 0.0 0.0 9.799475917370966 0.0 40 9.054641137407801E-5 0.0 0.0 10.088907521328208 0.0 41 9.054641137407801E-5 0.0 0.0 10.376075465001096 0.0 42 9.054641137407801E-5 0.0 0.0 10.665325976135588 0.0 43 9.054641137407801E-5 0.0 0.0 10.935018462413279 0.0 44 9.054641137407801E-5 0.0 0.0 11.207110428592383 0.0 45 9.054641137407801E-5 0.0 0.0 11.483956081368627 0.0 46 9.054641137407801E-5 0.0 0.0 11.777960279100258 0.0 47 9.054641137407801E-5 0.0 0.0 12.08586335097781 0.0 48 9.054641137407801E-5 0.0 0.0 12.382765033873412 0.0 49 9.054641137407801E-5 0.0 0.0 12.691709389481767 0.0 50 9.054641137407801E-5 0.0 0.0 13.00893874173085 0.0 51 9.054641137407801E-5 0.0 0.0 13.320599489680426 0.0 52 9.054641137407801E-5 0.0 0.0 13.690481580143533 0.0 53 9.054641137407801E-5 0.0 0.0 13.991729490785092 0.0 54 9.054641137407801E-5 0.0 0.0 14.324215913350706 0.0 55 9.054641137407801E-5 0.0 0.0 14.635378656037725 0.0 56 9.054641137407801E-5 0.0 0.0 14.956410957564518 0.0 57 9.054641137407801E-5 0.0 0.0 15.277533805502687 0.0 58 9.054641137407801E-5 0.0 0.0 15.586840346756537 0.0 59 9.054641137407801E-5 0.0 0.0 15.91430144349089 0.0 60 9.054641137407801E-5 0.0 0.0 16.241943633047992 0.0 61 9.054641137407801E-5 0.0 0.0 16.579681747473302 0.0 62 1.3581961706111701E-4 0.0 0.0 16.945262883396143 0.0 63 1.3581961706111701E-4 0.0 0.0 17.324290161408033 0.0 64 1.3581961706111701E-4 0.0 0.0 17.689418565274003 0.0 65 1.3581961706111701E-4 0.0 0.0 18.023036817981794 0.0 66 1.3581961706111701E-4 0.0 0.0 18.33881742764889 0.0 67 1.3581961706111701E-4 0.0 0.0 18.66890437031309 0.0 68 1.3581961706111701E-4 0.0 0.0 19.028781082319366 0.0 69 1.3581961706111701E-4 0.0 0.0 19.515739682689155 0.0 70 1.3581961706111701E-4 0.0 0.0 19.86533937700447 0.0 71 1.3581961706111701E-4 0.0 0.0 20.222182784229712 0.0 72 1.3581961706111701E-4 0.0 0.0 20.587084822067247 0.0 73 1.8109282274815603E-4 0.0 0.0 20.942434213504818 0.0 74 1.8109282274815603E-4 0.0 0.0 21.319831656111973 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGATA 15 0.0013099518 80.0 80 CGTTTTT 13495 0.0 75.64283 1 TGTTACG 150 0.0 74.666664 1 GCGTAAG 155 0.0 72.258064 1 GTATCCG 40 3.7161954E-9 70.00001 1 CTACGCG 65 0.0 67.69231 1 CGCTAGG 190 0.0 67.36842 2 GCCGTAA 150 0.0 66.666664 80 TACGGGA 755 0.0 66.22517 4 TAACGGG 725 0.0 65.655174 3 CGAGGGA 1405 0.0 64.91103 4 TTACGGG 955 0.0 62.827225 3 TAAGGGA 2905 0.0 62.375217 4 GGGCGAT 1745 0.0 61.891113 7 CGAAGGG 1210 0.0 61.487602 3 TTAGCGG 705 0.0 61.276592 2 ATAGGGA 2755 0.0 60.980038 4 TAGCGGG 1495 0.0 60.735786 3 GGCGATA 370 0.0 60.540543 8 CGTAAGG 420 0.0 60.000004 2 >>END_MODULE