##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547258_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2134992 Sequences flagged as poor quality 0 Sequence length 86 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.074719717919315 33.0 31.0 34.0 31.0 34.0 2 32.49419810472358 34.0 31.0 34.0 31.0 34.0 3 32.61365897389779 34.0 31.0 34.0 31.0 34.0 4 36.12970072019005 37.0 35.0 37.0 35.0 37.0 5 36.110621491790134 37.0 35.0 37.0 35.0 37.0 6 36.16948072873341 37.0 36.0 37.0 35.0 37.0 7 36.34856524052549 37.0 37.0 37.0 35.0 37.0 8 36.335135213621406 37.0 37.0 37.0 35.0 37.0 9 38.09976383986451 39.0 39.0 39.0 37.0 39.0 10-11 37.701103329661194 39.0 37.5 39.0 35.0 39.0 12-13 36.79443037725669 39.0 35.0 39.0 33.5 39.0 14-15 37.82980381191123 40.0 35.0 41.0 33.0 41.0 16-17 38.01256538666187 40.0 35.0 41.0 34.0 41.0 18-19 37.890765867038375 40.0 36.0 41.0 34.0 41.0 20-21 37.70191129521797 40.0 35.0 41.0 34.0 41.0 22-23 37.51630380816415 39.0 35.0 41.0 33.0 41.0 24-25 37.47865308160405 39.0 35.0 41.0 34.0 41.0 26-27 37.445185040506004 39.0 35.0 41.0 33.5 41.0 28-29 37.37104565263008 39.0 35.0 41.0 33.0 41.0 30-31 37.195243354541844 39.0 35.0 41.0 33.0 41.0 32-33 36.86032055389435 39.0 35.0 41.0 32.5 41.0 34-35 36.506501663706466 39.0 35.0 41.0 31.0 41.0 36-37 36.31821782001994 39.0 35.0 41.0 31.0 41.0 38-39 36.20753754580814 38.5 35.0 41.0 31.0 41.0 40-41 36.07359863643517 38.0 35.0 41.0 30.0 41.0 42-43 36.02202865397153 38.0 35.0 41.0 30.0 41.0 44-45 35.8862426650779 38.0 35.0 41.0 30.0 41.0 46-47 35.78218841101044 38.0 35.0 40.5 30.0 41.0 48-49 35.694088549277936 37.5 35.0 40.0 30.0 41.0 50-51 35.46219517450183 37.0 35.0 40.0 29.0 41.0 52-53 35.27921088228902 37.0 35.0 40.0 29.0 41.0 54-55 35.084833104761046 36.0 34.5 40.0 28.5 41.0 56-57 34.80698803555236 36.0 34.0 40.0 27.5 41.0 58-59 34.58223824726275 36.0 34.0 39.5 27.0 41.0 60-61 34.2558405371074 35.0 34.0 39.0 26.0 41.0 62-63 33.879853413970636 35.0 33.5 39.0 26.0 40.0 64-65 33.608109070197926 35.0 33.0 38.0 25.5 40.0 66-67 33.34710762382248 35.0 33.0 37.0 25.0 40.0 68-69 32.95638531666629 35.0 33.0 37.0 24.0 39.5 70-71 32.704559314507975 35.0 33.0 36.0 24.0 39.0 72-73 32.50015245958767 35.0 33.0 36.0 24.0 38.5 74-75 32.237928994581715 35.0 33.0 35.5 23.0 37.5 76-77 30.312262294191264 33.0 30.0 34.5 19.5 35.5 78-79 31.364626893215526 34.0 31.5 35.0 20.0 36.0 80-81 31.600375083372676 35.0 32.0 35.0 20.0 36.0 82-83 31.470116984044907 35.0 32.0 35.0 20.0 36.0 84-85 31.27048157557499 34.0 32.0 35.0 19.5 36.0 86 30.84720130098848 34.0 31.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 9.0 10 17.0 11 18.0 12 37.0 13 111.0 14 327.0 15 947.0 16 2395.0 17 5118.0 18 10430.0 19 17084.0 20 20807.0 21 20432.0 22 17839.0 23 15113.0 24 14863.0 25 16094.0 26 18314.0 27 21851.0 28 26496.0 29 33097.0 30 41436.0 31 51836.0 32 66932.0 33 93979.0 34 272478.0 35 241358.0 36 179532.0 37 320842.0 38 438060.0 39 186676.0 40 460.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.55113274429131 23.562055501847315 28.549146788372042 14.337664965489333 2 31.812859251931624 24.490255701192325 29.632851083282745 14.064033963593307 3 29.66273409923784 24.75030351401785 32.01843379272616 13.56852859401815 4 26.317194631174264 27.670689164174856 31.229718893560253 14.782397311090628 5 24.750162998268845 30.785876481035995 29.609291276032884 14.854669244662274 6 23.601634104483765 39.43996043076508 26.34234695024618 10.616058514504973 7 85.59507482932021 4.297439990407458 7.7642445498624815 2.343240630409856 8 86.12819158104573 3.4801067170275113 7.974221917459176 2.4174797844675764 9 81.86840981137166 5.717726342768498 9.004061841917908 3.409802003941935 10-11 44.308924810959475 25.104871587340842 19.3504472147905 11.235756386909177 12-13 31.63550495739563 25.70670054032989 26.257264664223566 16.400529838050915 14-15 17.769621619191078 29.978472987252413 35.84861207910849 16.403293314448018 16-17 22.529616036031985 23.298424537422154 33.208695863965765 20.963263562580096 18-19 25.76063516865637 25.475060328094905 29.99643558383357 18.767868919415154 20-21 27.819097214415795 25.713164264784133 28.983176517757443 17.484562003042633 22-23 22.816338421876992 24.14322863973261 30.78732847710905 22.253104461281353 24-25 21.17525498924586 25.698995593426112 33.743779836177374 19.381969581150653 26-27 19.003677765537294 31.964218132901667 29.334442470978818 19.69766163058222 28-29 18.071730479552148 27.524248334419987 34.59183922000644 19.81218196602142 30-31 23.231749814519212 26.855627562070488 30.81575949699109 19.09686312641921 32-33 27.33160124253393 26.97984348419104 27.796169728036453 17.892385545238575 34-35 21.18780772949032 28.072212916957067 29.739736729692662 21.00024262385995 36-37 23.799597375540518 29.28687788994057 27.97375821548746 18.939766519031455 38-39 21.999801404408075 30.228356827566564 27.045768789765955 20.726072978259403 40-41 21.659706453232612 26.88394148549503 27.67216457953941 23.784187481732953 42-43 22.14500101171339 25.55264844083725 27.735092215802215 24.567258331647142 44-45 20.50923375825296 30.371659472260315 26.896400548573485 22.222706220913242 46-47 21.449869601384925 29.56474778359825 26.84122469779746 22.144157917219363 48-49 22.218584425609087 25.691548258728837 30.538311150580423 21.55155616508165 50-51 20.037264776636164 30.57662511147583 27.538159393571497 21.847950718316508 52-53 22.88594055621754 25.701548296199704 29.931447049918685 21.481064097664067 54-55 22.64980384001439 26.37958362373255 30.156951407780454 20.813661128472614 56-57 23.377698839152558 24.698101913262438 28.884909170619842 23.03929007696516 58-59 24.264353215375046 27.594318854590554 27.19626115695047 20.94506677308393 60-61 25.675904172006263 27.92663860098773 26.57869444007284 19.81876278693316 62-63 23.390204740814017 25.21459096802236 29.868214962866375 21.52698932829725 64-65 20.24588382532581 29.25275598222382 29.76425672789406 20.73710346455631 66-67 20.805417537864308 28.240269752767222 25.527660056805836 25.42665265256263 68-69 19.850917474163836 30.62027867083343 25.295996425279345 24.23280742972339 70-71 20.54885919947241 28.648327487878174 28.344321664905536 22.458491647743877 72-73 22.65476872981257 29.989433215674815 26.068270981811644 21.287527072700975 74-75 21.984321252726005 30.339247172823132 25.324872411699907 22.351559162750963 76-77 25.37583279000577 27.161694282695205 25.718105735290813 21.744367192008212 78-79 20.286773908286307 28.65584508044995 29.25736958264949 21.80001142861425 80-81 18.18880351776494 27.820338436865338 29.296245606540914 24.694612438828813 82-83 19.632111033671322 27.67024419763634 30.113204171256847 22.584440597435492 84-85 18.561615219167095 26.736634141954628 28.442963720707148 26.258786918171122 86 20.02653874112877 27.23944633047805 29.60891656736887 23.125098361024303 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 571.0 1 997.5 2 3635.0 3 4010.0 4 2341.0 5 2833.5 6 3328.5 7 3498.0 8 3690.5 9 4019.0 10 4154.5 11 4151.0 12 4273.5 13 4478.0 14 4557.0 15 4619.0 16 4822.0 17 4946.5 18 4984.5 19 5867.0 20 6513.5 21 6332.0 22 6323.0 23 7173.0 24 9168.5 25 12895.5 26 15589.5 27 16394.0 28 17589.0 29 18083.0 30 21002.0 31 24801.5 32 30677.5 33 36896.5 34 39430.0 35 43118.5 36 45497.0 37 47937.5 38 50774.0 39 56956.5 40 68622.5 41 84850.5 42 99410.0 43 103621.0 44 104318.5 45 109594.5 46 116744.5 47 122482.0 48 120605.0 49 104331.0 50 93100.0 51 86559.5 52 75717.0 53 71782.5 54 70030.0 55 66363.5 56 64306.0 57 63795.0 58 61720.0 59 49190.5 60 34042.5 61 27266.0 62 22854.0 63 17149.5 64 13774.0 65 11469.0 66 8286.5 67 6754.5 68 5203.0 69 3831.5 70 3017.0 71 2677.0 72 2395.5 73 1926.0 74 1242.5 75 781.0 76 606.0 77 332.5 78 207.5 79 147.0 80 139.5 81 87.0 82 30.5 83 19.0 84 14.5 85 12.0 86 14.0 87 9.0 88 4.5 89 4.0 90 1.5 91 0.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2134992.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.11549250996039 #Duplication Level Percentage of deduplicated Percentage of total 1 81.08298218875096 13.066921921480676 2 8.189909244134443 2.639688421622079 3 2.362765867946647 1.1423140694305276 4 1.1653723491383687 0.7512219745541728 5 0.6404588479912366 0.5160654883870317 6 0.42336012421603536 0.40935941464916503 7 0.29757921085598893 0.33569448805687285 8 0.23117016471723503 0.2980336846421528 9 0.2019767415508671 0.29294591990842833 >10 2.299637573803231 8.927594135180266 >50 1.1757049971696227 13.916442578664215 >100 1.922626000363692 56.43403812558435 >500 0.005869717601471749 0.6193502213006539 >1k 2.934858800735874E-4 0.13531584445522496 >5k 0.0 0.0 >10k+ 2.934858800735874E-4 0.5150137120842169 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10889 0.5100253303056873 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2861 0.13400518596790995 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02824366555003485 0.0 2 0.0 0.0 0.0 0.08571460689314059 0.0 3 0.0 0.0 0.0 0.1329747371418722 0.0 4 0.0 0.0 0.0 0.23096105278146242 0.0 5 0.0 0.0 0.0 0.42627794389861884 0.0 6 0.0 0.0 0.0 0.5847797087764264 0.0 7 0.0 0.0 0.0 0.6895576189512654 0.0 8 0.0 0.0 0.0 0.8962562857378388 0.0 9 0.0 0.0 0.0 0.9587389554621282 0.0 10 0.0 0.0 0.0 1.0844068736557326 0.0 11 0.0 0.0 0.0 1.3015505444516888 0.0 12 0.0 0.0 0.0 1.4828158606683304 0.0 13 0.0 0.0 0.0 1.5484367154537346 0.0 14 0.0 0.0 0.0 1.5739169046066683 0.0 15 0.0 0.0 0.0 1.6200997474463605 0.0 16 0.0 0.0 0.0 1.7066106102505303 0.0 17 0.0 0.0 0.0 1.8112011660933625 0.0 18 0.0 0.0 0.0 1.9476887969603633 0.0 19 0.0 0.0 0.0 2.041974864542818 0.0 20 0.0 0.0 0.0 2.1412258219234546 0.0 21 0.0 0.0 0.0 2.2644581338009697 0.0 22 0.0 0.0 0.0 2.4038029182310754 0.0 23 0.0 0.0 0.0 2.5364497852919357 0.0 24 0.0 0.0 0.0 2.642445498624819 0.0 25 0.0 0.0 0.0 2.7300336488380283 0.0 26 0.0 0.0 0.0 2.8216030786063837 0.0 27 0.0 0.0 0.0 2.9270835675262483 0.0 28 0.0 0.0 0.0 3.0305968359600413 0.0 29 0.0 0.0 0.0 3.1680212384870763 0.0 30 0.0 0.0 0.0 3.3091927276542488 0.0 31 0.0 0.0 0.0 3.4529871774695176 0.0 32 0.0 0.0 0.0 3.5808096704812007 0.0 33 0.0 0.0 0.0 3.7062433957597967 0.0 34 0.0 0.0 0.0 3.83706355808359 0.0 35 0.0 0.0 0.0 3.98362148429596 0.0 36 0.0 0.0 0.0 4.125308197876151 0.0 37 0.0 0.0 0.0 4.268212714614387 0.0 38 0.0 0.0 0.0 4.445871459939896 0.0 39 0.0 0.0 0.0 4.732429910744396 0.0 40 0.0 0.0 0.0 4.910276010401913 0.0 41 0.0 0.0 0.0 5.0868574683183825 0.0 42 0.0 0.0 0.0 5.252103989148437 0.0 43 0.0 0.0 0.0 5.3977251437007725 0.0 44 0.0 0.0 0.0 5.550091054205355 0.0 45 0.0 0.0 0.0 5.695524854425684 0.0 46 0.0 0.0 0.0 5.8695770288600615 0.0 47 0.0 0.0 0.0 6.063957148317184 0.0 48 0.0 0.0 0.0 6.231358243965317 0.0 49 4.6838583001716166E-5 0.0 0.0 6.405035709735681 0.0 50 4.6838583001716166E-5 0.0 0.0 6.586207348786319 0.0 51 4.6838583001716166E-5 0.0 0.0 6.773280649295173 0.0 52 9.367716600343233E-5 0.0 0.0 6.998199524869414 0.0 53 9.367716600343233E-5 0.0 0.0 7.19023771517645 0.0 54 9.367716600343233E-5 0.0 0.0 7.373657606211171 0.0 55 9.367716600343233E-5 0.0 0.0 7.563681737449134 0.0 56 9.367716600343233E-5 0.0 0.0 7.76283939237243 0.0 57 9.367716600343233E-5 0.0 0.0 7.958858862234613 0.0 58 9.367716600343233E-5 0.0 0.0 8.142138237520328 0.0 59 9.367716600343233E-5 0.0 0.0 8.333754880580349 0.0 60 9.367716600343233E-5 0.0 0.0 8.544809535586081 0.0 61 9.367716600343233E-5 0.0 0.0 8.768978993832295 0.0 62 9.367716600343233E-5 0.0 0.0 9.028324227912798 0.0 63 9.367716600343233E-5 0.0 0.0 9.311744493656182 0.0 64 9.367716600343233E-5 0.0 0.0 9.546827341741796 0.0 65 1.405157490051485E-4 0.0 0.0 9.761722760553669 0.0 66 1.405157490051485E-4 0.0 0.0 9.955400301265765 0.0 67 1.405157490051485E-4 0.0 0.0 10.16593973185848 0.0 68 1.405157490051485E-4 0.0 0.0 10.426690123429035 0.0 69 1.405157490051485E-4 0.0 0.0 10.8214925395505 0.0 70 1.405157490051485E-4 0.0 0.0 11.07451456492577 0.0 71 1.405157490051485E-4 0.0 0.0 11.310299991756409 0.0 72 1.405157490051485E-4 0.0 0.0 11.542478847695916 0.0 73 1.405157490051485E-4 0.0 0.0 11.765711534282095 0.0 74 1.8735433200686466E-4 0.0 0.0 12.027679729010694 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGACG 50 3.6379788E-12 72.0 1 CGTTTTT 7300 0.0 71.39726 1 GGGCGAT 1525 0.0 69.508194 7 CGTTAGG 260 0.0 69.230774 2 CGAAACG 380 0.0 68.42105 80 TACGGGA 965 0.0 65.90673 4 TTACGGG 650 0.0 64.0 3 GGCGATT 600 0.0 64.0 8 CGAGGGA 1345 0.0 61.858734 4 CGATAGG 480 0.0 61.666664 2 GGCGATA 305 0.0 61.639347 8 ACGTTAG 145 0.0 60.68966 1 GCGATAG 225 0.0 60.444443 1 AGGGATT 3410 0.0 59.941353 6 AGGGCGA 895 0.0 59.88827 6 TAGGGAG 2480 0.0 59.35484 5 TAAGGGA 2640 0.0 59.090904 4 TACGGGG 1180 0.0 58.983055 4 TTGCGGG 1210 0.0 58.84298 3 GTAGGGC 650 0.0 58.46154 4 >>END_MODULE