SRR1547257_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547257_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1294721
Sequences flagged as poor quality	0
Sequence length	50
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7233	0.5586531770165155	No Hit
CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTG	1819	0.1404935889662715	No Hit
CTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	1742	0.1345463617258081	No Hit
GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTG	1563	0.12072098930966595	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCT	1435	0.11083468948136317	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCT	1409	0.10882653482873916	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.856852E-4	44.0	1
TAATACG	45	4.802132E-10	44.0	1
TTGCGTA	20	7.856852E-4	44.0	16
CGTTTTT	7215	0.0	42.8413	1
CGCGACC	495	0.0	40.0	10
GCGTAAG	50	1.3478711E-9	39.6	1
TACGGGT	195	0.0	39.48718	4
TAGCCGT	45	2.3514076E-8	39.11111	44
GCGCGAC	505	0.0	38.772274	9
TAACGCG	40	4.125086E-7	38.5	1
AGCGCAG	80	0.0	38.5	1
TAGTACG	40	4.125086E-7	38.5	1
TAGGGTA	835	0.0	38.467068	5
TAGGGCG	695	0.0	38.30216	5
AATACGG	115	0.0	38.260868	2
AGGGCGC	415	0.0	38.168674	6
CACGACG	145	0.0	37.931034	26
TACGGGA	320	0.0	37.8125	4
AGGGCGA	1595	0.0	37.793102	6
ACAACGA	425	0.0	37.788235	13