##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547256_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 213944 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.198444452753993 31.0 31.0 33.0 30.0 34.0 2 31.613492315746175 31.0 31.0 34.0 30.0 34.0 3 31.676686422615266 31.0 31.0 34.0 30.0 34.0 4 35.395271659873615 37.0 35.0 37.0 33.0 37.0 5 35.28275156115619 37.0 35.0 37.0 33.0 37.0 6 35.32453819691134 37.0 35.0 37.0 32.0 37.0 7 35.802186553490635 37.0 35.0 37.0 35.0 37.0 8 35.773090154432936 37.0 35.0 37.0 35.0 37.0 9 37.39885203604682 39.0 37.0 39.0 35.0 39.0 10 36.990347941517406 39.0 37.0 39.0 33.0 39.0 11 36.80697752682945 39.0 37.0 39.0 32.0 39.0 12 36.60719160154059 39.0 35.0 39.0 32.0 39.0 13 36.598465018883445 39.0 35.0 39.0 32.0 39.0 14 37.68930187338743 40.0 36.0 41.0 32.0 41.0 15 37.76253599072655 40.0 36.0 41.0 32.0 41.0 16 37.755249037131215 40.0 36.0 41.0 32.0 41.0 17 37.616329506786826 39.0 36.0 41.0 32.0 41.0 18 37.37302752122051 39.0 36.0 41.0 32.0 41.0 19 37.18264592603672 38.0 36.0 41.0 32.0 41.0 20 36.88373593089781 38.0 35.0 40.0 32.0 41.0 21 36.75850689900161 38.0 35.0 40.0 31.0 41.0 22 36.72720898926822 38.0 35.0 40.0 31.0 41.0 23 36.60693452492241 38.0 35.0 40.0 31.0 41.0 24 36.47976573308903 38.0 35.0 40.0 31.0 41.0 25 36.30030288299742 38.0 35.0 40.0 31.0 41.0 26 36.23162135886026 38.0 35.0 40.0 31.0 41.0 27 36.04400684291216 38.0 35.0 40.0 30.0 41.0 28 35.94126032980593 38.0 35.0 40.0 30.0 41.0 29 35.7784700669334 38.0 35.0 40.0 30.0 41.0 30 35.622602176270426 37.0 35.0 40.0 29.0 41.0 31 35.331624163332464 37.0 34.0 40.0 27.0 41.0 32 34.693480536962944 37.0 33.0 40.0 24.0 41.0 33 34.25548274314774 37.0 33.0 40.0 21.0 41.0 34 33.75250532849718 37.0 33.0 40.0 18.0 41.0 35 33.34961017836443 37.0 32.0 40.0 15.0 41.0 36 33.08878024155854 37.0 32.0 40.0 14.0 41.0 37 33.0357056052051 37.0 32.0 40.0 12.0 41.0 38 32.916618367423254 37.0 32.0 40.0 10.0 41.0 39 32.865399356841046 37.0 32.0 40.0 10.0 41.0 40 32.7711270238941 37.0 31.0 40.0 10.0 41.0 41 32.7159770781139 37.0 31.0 40.0 10.0 41.0 42 32.51806547507759 37.0 31.0 40.0 10.0 41.0 43 32.42630781886849 37.0 31.0 40.0 10.0 41.0 44 32.12347156265191 36.0 31.0 40.0 10.0 41.0 45 31.930173316381858 36.0 30.0 40.0 9.0 41.0 46 31.928607486071122 36.0 30.0 40.0 10.0 41.0 47 31.788617582171035 35.0 30.0 40.0 10.0 41.0 48 31.702038851288187 35.0 30.0 40.0 9.0 41.0 49 31.614572037542533 35.0 29.0 40.0 8.0 41.0 50 31.08661612384549 35.0 28.0 39.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 3.0 15 10.0 16 30.0 17 83.0 18 207.0 19 340.0 20 631.0 21 1022.0 22 1393.0 23 2065.0 24 3213.0 25 4721.0 26 6481.0 27 7210.0 28 6563.0 29 6306.0 30 6661.0 31 7131.0 32 8222.0 33 9624.0 34 13551.0 35 19140.0 36 16856.0 37 20149.0 38 28316.0 39 44014.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.711513293198223 24.89576711662865 24.491923120068805 20.90079647010433 2 37.279848932430916 27.254328235426094 23.32105597726508 12.144766854877911 3 27.281438133343304 25.118722656396063 35.40552667987885 12.194312530381781 4 21.696331750364582 29.455838911116928 34.832946939386005 14.014882399132484 5 21.040552667987885 29.94194742549452 34.45247354447893 14.565026362038664 6 17.325561829263734 38.227760535467226 32.32574879407695 12.120928841192088 7 71.88890550798341 5.695883034812848 18.973189245783946 3.442022211419811 8 68.62730434132295 5.840313353026961 17.36435702800733 8.168025277642748 9 61.69605130314475 7.647795684852111 24.10584078076506 6.550312231238081 10 29.805930523875407 23.115862094753766 27.48522977975545 19.592977601615377 11 23.054163706390458 24.280185469094718 35.034868937665934 17.630781886848894 12 20.11367460643907 19.76171334554837 38.37546273791273 21.74914931009984 13 17.91543581497962 23.931028680402346 42.02127659574468 16.13225890887335 14 14.480892196088696 28.623845492278356 38.066035972030065 18.829226339602886 15 12.61217888793329 26.22321729050593 44.91923120068803 16.245372620872754 16 13.700314100886214 23.312175148637028 43.68199154919044 19.305519201286316 17 13.38995251093744 28.091930598661328 36.15058146056912 22.367535429832106 18 15.112833264779567 26.07224320382904 38.25954455371499 20.5553789776764 19 17.35220431514789 33.038084732453356 32.13177280035897 17.477938152039783 20 18.02761470291291 26.791122910668214 32.60198930561268 22.579273080806193 21 16.928729013199717 33.760703735556966 31.688198780989417 17.6223684702539 22 15.219403208316196 27.137007815129195 32.37716411771305 25.266424858841567 23 14.517817746700072 31.777474479303 30.476666791309874 23.22804098268706 24 15.884530531353999 27.768014059753952 36.4525296339229 19.894925774969153 25 18.751635942115694 27.55020005235015 32.172437647234794 21.52572635829937 26 15.551733163818568 29.59839958119882 34.04675989978686 20.803107355195753 27 19.65748046217702 25.995587630407957 31.724189507534682 22.62274239988034 28 20.001963130538833 26.49805556594249 35.134895112739784 18.365086190778896 29 20.122088023034067 25.423475301948173 31.4998317316681 22.95460494334966 30 24.32131772800359 25.949313839135474 30.909022921886102 18.820345510974835 31 24.674213812960403 24.661593688067907 28.60935571925364 22.054836779718055 32 24.655517331638187 25.425344950080397 30.897805033092773 19.021332685188646 33 23.48465018883446 24.99018434730584 29.827431477395955 21.697733986463746 34 20.561922746139178 27.01314362636952 31.016060277455782 21.408873350035524 35 20.137980032157948 24.511087013424074 30.903413977489436 24.447518976928542 36 21.38690498448192 29.798919343379577 28.72106719515387 20.093108476984632 37 18.460905657555248 26.987903376584526 29.295983995811987 25.25520697004824 38 17.5354298321056 31.927981153946828 28.68086976031111 21.855719253636465 39 18.057996485061512 26.534046292487755 26.37559361328198 29.032363609168755 40 20.408611599297014 26.462064839397225 30.130781886848894 22.998541674456867 41 16.794114347679766 24.016097670418425 30.461709606252104 28.7280783756497 42 21.493942340051603 27.259469767789703 27.945630632314998 23.300957259843695 43 20.12956661556295 23.515499383016117 32.345847511498334 24.009086489922595 44 22.390438619451817 25.444508843435663 29.54745166959578 22.61760086751673 45 19.405077964327113 24.240455446285008 31.18619825748794 25.168268331899935 46 23.529054331974724 24.82892719590173 28.39247653591594 23.249541936207603 47 21.87441573495868 23.30189208390981 29.830235949594286 24.993456231537227 48 19.776203118573086 23.26029241296788 30.90107691732416 26.062427551134874 49 20.8507833825674 21.176102157573943 30.228003589724413 27.745110870134244 50 18.284223909060316 21.031671839359834 35.247074000673074 25.43703025090678 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 758.0 1 651.0 2 544.0 3 2523.5 4 4503.0 5 3297.0 6 2091.0 7 2344.0 8 2597.0 9 2805.5 10 3014.0 11 3173.0 12 3332.0 13 3368.5 14 3405.0 15 3343.5 16 3282.0 17 3191.5 18 3101.0 19 2932.0 20 2763.0 21 2632.5 22 2502.0 23 2409.0 24 2316.0 25 2219.5 26 2123.0 27 2138.5 28 2154.0 29 2156.0 30 2158.0 31 2271.5 32 2385.0 33 2563.5 34 2742.0 35 3224.5 36 3707.0 37 3975.5 38 4244.0 39 4957.0 40 5670.0 41 7027.0 42 8384.0 43 10454.0 44 12524.0 45 15749.5 46 18975.0 47 23427.0 48 27879.0 49 27720.5 50 27562.0 51 22139.0 52 16716.0 53 13352.0 54 9988.0 55 8539.5 56 7091.0 57 6562.5 58 6034.0 59 5528.5 60 5023.0 61 4468.5 62 3914.0 63 3695.5 64 3477.0 65 2880.0 66 2283.0 67 1904.5 68 1526.0 69 1337.5 70 1149.0 71 1026.5 72 904.0 73 714.0 74 524.0 75 410.5 76 297.0 77 213.0 78 129.0 79 105.5 80 82.0 81 73.0 82 64.0 83 39.5 84 15.0 85 11.5 86 8.0 87 5.0 88 2.0 89 2.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 213944.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.02445119176167 #Duplication Level Percentage of deduplicated Percentage of total 1 75.0120199255911 42.02507249116732 2 12.26692698514062 13.744957043038294 3 5.433010352702711 9.131442699879866 4 2.841602094925722 6.367967914942952 5 1.5436650437595572 4.324149345026797 6 0.9127256136403866 3.0680970955719933 7 0.5489261407753633 2.1527300047226006 8 0.3139041929788442 1.4069048110746074 9 0.22900086596382646 1.1546683054255393 >10 0.82320281638742 7.89007699100936 >50 0.04046914070410594 1.5140882214960805 >100 0.026650409731972205 3.2255940818066606 >500 0.006909365486066869 2.451407262926269 >1k 9.870522122952669E-4 1.542843731911638 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2790 1.3040795722245073 No Hit GAGAGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCT 733 0.3426130202295928 No Hit CTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC 702 0.32812324720487607 TruSeq Adapter, Index 16 (95% over 21bp) AAGAGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCT 678 0.31690535841154693 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 621 0.29026287252739036 No Hit CCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTG 616 0.28792581236211345 TruSeq Adapter, Index 13 (95% over 21bp) TAGAGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCT 545 0.25473955801518156 No Hit GAGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTC 538 0.25146767378379387 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 500 0.23370601652768946 No Hit GCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTG 412 0.19257375761881615 TruSeq Adapter, Index 13 (95% over 21bp) AAAACTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTT 364 0.17013798003215794 No Hit AAGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTC 362 0.16920315596604718 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTT 311 0.14536514228022285 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGC 278 0.12994054518939535 No Hit AAAAACTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCT 260 0.12152712859439853 No Hit AGAGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTT 243 0.11358112403245708 No Hit TCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTG 223 0.1042328833713495 TruSeq Adapter, Index 13 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.35476573308903264 0.0 2 0.0 0.0 0.0 1.090472273118199 0.0 3 0.0 0.0 0.0 1.5480686534794152 0.0 4 0.0 0.0 0.0 2.6469543431926112 0.0 5 0.0 0.0 0.0 4.479209512769697 0.0 6 0.0 0.0 0.0 8.343304790038514 0.0 7 0.0 0.0 0.0 10.120405339715065 0.0 8 0.0 0.0 0.0 14.530437871592566 0.0 9 0.0 0.0 0.0 17.02548330404218 0.0 10 0.0 0.0 0.0 20.449743858205885 0.0 11 0.0 0.0 0.0 22.457745952211795 0.0 12 4.6741203305537897E-4 0.0 0.0 24.21801966869835 0.0 13 4.6741203305537897E-4 0.0 0.0 25.20332423437909 0.0 14 4.6741203305537897E-4 0.0 0.0 25.662790262872527 0.0 15 4.6741203305537897E-4 0.0 0.0 26.037654713382942 0.0 16 4.6741203305537897E-4 0.0 0.0 26.656040833115206 0.0 17 4.6741203305537897E-4 0.0 0.0 27.314624387690237 0.0 18 4.6741203305537897E-4 0.0 0.0 28.349474628874844 0.0 19 4.6741203305537897E-4 0.0 0.0 28.72714355158359 0.0 20 4.6741203305537897E-4 0.0 0.0 29.259993269266722 0.0 21 4.6741203305537897E-4 0.0 0.0 29.719926709793217 0.0 22 4.6741203305537897E-4 0.0 0.0 30.16864226152638 0.0 23 4.6741203305537897E-4 0.0 0.0 30.67671914145758 0.0 24 4.6741203305537897E-4 0.0 0.0 31.077291253786036 0.0 25 4.6741203305537897E-4 0.0 0.0 31.422708746213964 0.0 26 4.6741203305537897E-4 0.0 0.0 31.74475563698912 0.0 27 4.6741203305537897E-4 0.0 0.0 32.11868526343342 0.0 28 4.6741203305537897E-4 0.0 0.0 32.444471450473024 0.0 29 4.6741203305537897E-4 0.0 0.0 32.77633399394234 0.0 30 4.6741203305537897E-4 0.0 0.0 33.16662304154358 0.0 31 4.6741203305537897E-4 0.0 0.0 33.51718206633512 0.0 32 4.6741203305537897E-4 0.0 0.0 33.83315260068055 0.0 33 9.348240661107579E-4 0.0 0.0 34.167819616348204 0.0 34 9.348240661107579E-4 0.0 0.0 34.51323710877613 0.0 35 9.348240661107579E-4 0.0 0.0 34.89651497588154 0.0 36 9.348240661107579E-4 0.0 0.0 35.23071457951613 0.0 37 9.348240661107579E-4 0.0 0.0 35.559305238754064 0.0 38 9.348240661107579E-4 0.0 0.0 35.879482481397 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 20 7.8421005E-4 44.000004 25 ATTAGCG 20 7.8421005E-4 44.000004 1 GGTGTAA 20 7.8421005E-4 44.000004 8 ATCTAGG 20 7.8421005E-4 44.000004 2 CGACGGT 20 7.8421005E-4 44.000004 28 TTGCTAG 20 7.8421005E-4 44.000004 1 TCTTACA 20 7.8421005E-4 44.000004 32 CACGACG 20 7.8421005E-4 44.000004 26 AATGCGG 20 7.8421005E-4 44.000004 2 AACATAG 20 7.8421005E-4 44.000004 1 TGATTCG 20 7.8421005E-4 44.000004 15 CGGGCTC 20 7.8421005E-4 44.000004 6 GCGGGAT 20 7.8421005E-4 44.000004 5 CGGGAAC 20 7.8421005E-4 44.000004 6 CAAGCGA 20 7.8421005E-4 44.000004 15 CGTAAGG 40 8.258212E-9 44.000004 2 CGGTCTA 20 7.8421005E-4 44.000004 31 CCGAAGG 20 7.8421005E-4 44.000004 2 ACGACGG 20 7.8421005E-4 44.000004 27 CAACGAG 25 4.43066E-5 44.0 14 >>END_MODULE