SRR1547255_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547255_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1190132
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6870	0.577246893621884	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	2947	0.24761959177637438	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	2341	0.19670087015557935	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	2049	0.17216577656932172	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT	1743	0.14645434287961337	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT	1645	0.13821996215545837	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	1587	0.1333465531554483	No Hit
GAGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	1587	0.1333465531554483	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT	1350	0.11343279568988986	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1303	0.10948365391401964	No Hit
AAGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	1282	0.10771914375884356	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	55	1.8189894E-12	44.000004	1
TATAACG	55	1.8189894E-12	44.000004	1
ACGCATT	20	7.856596E-4	44.0	15
CCGGATA	20	7.856596E-4	44.0	20
TATCTCG	20	7.856596E-4	44.0	1
CTCGCTA	20	7.856596E-4	44.0	12
GCGTATG	35	1.4461511E-7	44.0	1
TCACGAC	130	0.0	43.999996	25
CGTTTTT	5545	0.0	42.651035	1
CAACCCG	80	0.0	41.25	23
CGAATAT	75	0.0	41.066666	14
ATAACGG	145	0.0	40.965515	2
CGGTCTA	135	0.0	40.74074	31
ATAGCGG	190	0.0	40.526314	2
CGTTTAT	115	0.0	40.173916	39
TCGTTTA	110	0.0	40.000004	38
CGCATCG	110	0.0	40.000004	21
TACGGGA	265	0.0	39.849056	4
GCAATAG	100	0.0	39.6	1
TAGGGAC	935	0.0	39.294117	5