##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547253_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1491436 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.364154412257715 31.0 31.0 33.0 30.0 34.0 2 31.77216521526904 31.0 31.0 34.0 30.0 34.0 3 31.92302385083906 31.0 31.0 34.0 30.0 34.0 4 35.58789582657251 37.0 35.0 37.0 33.0 37.0 5 35.44471502632362 37.0 35.0 37.0 33.0 37.0 6 35.50412756564814 37.0 35.0 37.0 33.0 37.0 7 35.937315446321534 37.0 35.0 37.0 35.0 37.0 8 35.92591904714651 37.0 35.0 37.0 35.0 37.0 9 37.60044547670835 39.0 37.0 39.0 35.0 39.0 10 37.111818408567316 39.0 37.0 39.0 33.0 39.0 11 36.83066118827761 39.0 37.0 39.0 32.0 39.0 12 36.17281867944719 38.0 35.0 39.0 32.0 39.0 13 35.97072217647958 38.0 35.0 39.0 32.0 39.0 14 36.95101767692345 39.0 35.0 41.0 32.0 41.0 15 37.1697773152854 39.0 35.0 41.0 32.0 41.0 16 37.28389820280589 39.0 35.0 41.0 32.0 41.0 17 37.188140825352214 39.0 35.0 41.0 32.0 41.0 18 37.13836597748747 38.0 35.0 41.0 32.0 41.0 19 37.110230006517206 38.0 35.0 41.0 32.0 41.0 20 36.93078348651903 38.0 35.0 41.0 32.0 41.0 21 36.76870814436556 38.0 35.0 41.0 32.0 41.0 22 36.722999176632456 38.0 35.0 41.0 31.0 41.0 23 36.644795351594034 38.0 35.0 40.0 31.0 41.0 24 36.5278483287248 38.0 35.0 40.0 31.0 41.0 25 36.35846727583349 38.0 35.0 40.0 31.0 41.0 26 36.228571658455344 38.0 35.0 40.0 31.0 41.0 27 36.08202966805146 38.0 35.0 40.0 30.0 41.0 28 36.033441595884774 37.0 35.0 40.0 30.0 41.0 29 36.02760628012198 37.0 35.0 40.0 30.0 41.0 30 35.95397455874741 37.0 35.0 40.0 30.0 41.0 31 35.87742350325458 37.0 35.0 40.0 30.0 41.0 32 35.74937912186644 38.0 35.0 40.0 30.0 41.0 33 35.67198994794279 38.0 35.0 40.0 29.0 41.0 34 35.6405102196809 38.0 35.0 40.0 29.0 41.0 35 35.51124687884696 38.0 35.0 40.0 29.0 41.0 36 35.35298598129588 37.0 35.0 40.0 27.0 41.0 37 35.29259116717043 37.0 34.0 40.0 27.0 41.0 38 35.20249008338273 37.0 34.0 40.0 27.0 41.0 39 35.142437892071804 37.0 34.0 40.0 27.0 41.0 40 35.00070670146087 37.0 34.0 40.0 26.0 41.0 41 34.997234209178266 37.0 34.0 40.0 26.0 41.0 42 34.81642591435369 37.0 34.0 40.0 26.0 41.0 43 34.77621031006359 36.0 34.0 40.0 26.0 41.0 44 34.5463452672458 36.0 34.0 40.0 24.0 41.0 45 34.388817220450626 36.0 34.0 40.0 24.0 41.0 46 34.4467653992528 36.0 34.0 40.0 24.0 41.0 47 34.31999898084799 36.0 33.0 40.0 24.0 41.0 48 34.308123848425275 36.0 34.0 40.0 24.0 41.0 49 34.24022217513859 36.0 33.0 40.0 24.0 41.0 50 33.55660853030234 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 3.0 13 3.0 14 14.0 15 38.0 16 89.0 17 246.0 18 585.0 19 1187.0 20 2149.0 21 3363.0 22 5251.0 23 7660.0 24 11208.0 25 16169.0 26 21566.0 27 26099.0 28 29097.0 29 32746.0 30 38686.0 31 46492.0 32 57954.0 33 73938.0 34 123609.0 35 215649.0 36 110915.0 37 132637.0 38 192136.0 39 341945.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.269120498633534 25.090315642106 27.657707068891995 12.982856790368476 2 30.342032779147075 26.699167781922927 29.17168420233922 13.787115236590775 3 28.906101233978525 25.886259953494484 31.140927267412078 14.06671154511491 4 24.778066239516814 29.910636460431423 30.26385309191947 15.047444208132296 5 22.957471859335566 33.16240187309412 29.6639614438702 14.216164823700112 6 19.960963795965768 41.73695686573209 26.483536672039566 11.818542666262582 7 84.90689509975621 4.10966343845797 8.415245441306231 2.5681960204795917 8 82.93302562094517 3.8743868325560067 7.3181819400899535 5.874405606408857 9 76.60731000190421 5.475260084911455 12.781708366969818 5.135721546214521 10 45.557234772393855 22.69973367948742 16.197476794176886 15.54555475394184 11 38.67252768472801 22.246211034197913 24.056144547939034 15.025116733135047 12 34.58995223395439 19.80024620567024 26.701313365105843 18.908488195269527 13 21.08538348276426 34.406169624442484 29.228206909314245 15.28023998347901 14 16.064718834733775 37.252218667110085 28.555432482520203 18.127630015635937 15 13.98055297042582 23.12355340758839 45.81705148595046 17.078842136035338 16 14.925682362501643 19.815801683746404 43.635395685768614 21.62312026798334 17 15.466369324597235 22.95116920873574 29.89172850863195 31.690732958035074 18 19.52963452672458 23.31953902145315 34.87625348992515 22.274572961897125 19 24.584427357258374 29.645120541545193 25.267192155747882 20.503259945448548 20 26.905881311702277 24.584695555156237 24.63504971048037 23.87437342266111 21 20.33965922775097 31.967043842310368 26.21600926891935 21.47728766101931 22 21.299606553683834 25.429787131328464 24.49779943624802 28.772806878739683 23 18.609179341252325 31.925204970243442 23.235257832049115 26.23035785645512 24 19.189894839604246 25.21918473203007 35.335341241595344 20.255579186770333 25 18.097860048972937 26.05495643125149 31.71433437304718 24.13284914672839 26 17.084340192941568 31.102373819594003 28.531764018033627 23.281521969430806 27 20.05664339602906 29.031148503858027 26.717137041079873 24.195071059033037 28 17.555899146862487 27.95963085241338 34.071458647907114 20.41301135281702 29 17.521033420140053 24.052926173164654 32.09168881534307 26.334351591352227 30 20.09848226809598 28.202551098404488 28.59821004722965 23.100756586269878 31 25.342488715573445 26.848621060508126 23.719019790322886 24.089870433595543 32 25.960886018575387 25.012203004352852 24.732338497930854 24.294572479140907 33 23.420716678422675 27.406606787016003 24.661601302368993 24.51107523219233 34 17.790035911698524 24.765125690944835 29.856862781909516 27.587975615447125 35 17.597067524184745 24.826677108504825 32.25005967403228 25.32619569327816 36 25.037279507803216 23.00018237457055 27.08322717166543 24.879310945960807 37 20.235665492853865 26.757567874183003 31.298493532407694 21.708273100555438 38 19.74955680297378 27.2375080124122 26.686026084927544 26.326909099686475 39 21.939794935887292 26.25174663880985 27.298321885753058 24.510136539549805 40 24.018328644340087 22.19639327466951 27.428330816743056 26.356947264247342 41 18.957099064257534 22.138730726628562 27.355649186421676 31.54852102269222 42 23.449816150341015 25.084281189404038 24.43779015660075 27.028112503654196 43 22.56268455367847 24.235568941610637 28.101306391960502 25.100440112750395 44 22.125991326479983 27.192651913994297 27.5173725188342 23.16398424069152 45 18.577599038778732 29.38255479953548 26.141115005940584 25.898731155745203 46 23.923990033766117 27.001963208612374 26.869071150220325 22.204975607401188 47 21.736366830356786 24.259907900841874 28.10935232889645 25.894372939904898 48 22.375817668341117 21.30430001689647 29.40756425351138 26.912318061251035 49 22.519169444749892 19.4617134090903 31.143005801120534 26.876111345039277 50 20.153932183479544 25.282881732772978 29.75602037231232 24.807165711435154 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1406.0 1 1468.0 2 1530.0 3 5764.5 4 9999.0 5 7307.5 6 4616.0 7 5132.5 8 5649.0 9 6443.0 10 7237.0 11 7567.0 12 7897.0 13 7848.0 14 7799.0 15 7532.0 16 7265.0 17 6918.5 18 6572.0 19 6403.0 20 6234.0 21 5870.5 22 5507.0 23 5598.0 24 5689.0 25 5940.5 26 6192.0 27 6706.0 28 7220.0 29 8792.0 30 10364.0 31 12820.0 32 15276.0 33 17476.5 34 19677.0 35 24838.5 36 30000.0 37 31725.0 38 33450.0 39 43491.5 40 53533.0 41 69930.5 42 86328.0 43 105672.5 44 125017.0 45 141831.0 46 158645.0 47 175162.5 48 191680.0 49 186757.0 50 181834.0 51 153890.5 52 125947.0 53 105576.0 54 85205.0 55 74487.0 56 63769.0 57 58242.5 58 52716.0 59 49901.0 60 47086.0 61 40395.0 62 33704.0 63 30633.5 64 27563.0 65 23397.0 66 19231.0 67 16205.0 68 13179.0 69 11453.0 70 9727.0 71 7935.0 72 6143.0 73 5021.5 74 3900.0 75 3612.5 76 3325.0 77 2381.5 78 1438.0 79 1056.0 80 674.0 81 724.0 82 774.0 83 529.0 84 284.0 85 199.5 86 115.0 87 70.0 88 25.0 89 19.0 90 13.0 91 7.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1491436.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.86329716838105 #Duplication Level Percentage of deduplicated Percentage of total 1 78.94227322028746 20.41707471443824 2 8.514669178268429 4.404348384960225 3 2.8945860351849957 2.245906164223063 4 1.4984967279692336 1.5502426472525979 5 0.9581585264234844 1.2390569351654332 6 0.6731802737526661 1.0446396880774385 7 0.49608832009605824 0.8981335751085106 8 0.388375420875043 0.8035735138389039 9 0.34264240022724385 0.7975675997608105 >10 3.436913028337907 20.46394961050233 >50 1.292788073516304 24.523450140486442 >100 0.5558352596806408 18.951704055618865 >500 0.002084707958454505 0.41165951268522144 >1k 0.003648238927295384 1.8216000833097847 >5k 2.605884948068131E-4 0.42709337457207736 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6337 0.42489251969243064 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3353 0.22481688788523277 No Hit GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG 2909 0.19504692122223147 No Hit CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC 2588 0.17352403991857512 No Hit GAGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC 2533 0.16983631882293307 No Hit AAGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC 2288 0.15340919757870938 No Hit GAGAGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT 2082 0.13959700583866821 No Hit AAGAGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT 2026 0.13584223526855996 No Hit TAGAGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT 1698 0.11385000764364007 No Hit CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG 1676 0.11237491920538327 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18565999479696077 0.0 2 0.0 0.0 0.0 0.6873912122276785 0.0 3 0.0 0.0 0.0 1.048854929075066 0.0 4 0.0 0.0 0.0 1.8159009169686129 0.0 5 0.0 0.0 0.0 2.955607883945406 0.0 6 0.0 0.0 0.0 4.912178598344147 0.0 7 0.0 0.0 0.0 5.874137408510992 0.0 8 0.0 0.0 0.0 9.215346820111623 0.0 9 0.0 0.0 0.0 10.890980236496906 0.0 10 0.0 0.0 0.0 13.241801860757015 0.0 11 0.0 0.0 0.0 14.579640024781487 0.0 12 6.704947446621914E-5 0.0 0.0 15.781703003011863 0.0 13 6.704947446621914E-5 0.0 0.0 16.331441644160392 0.0 14 6.704947446621914E-5 0.0 0.0 16.564036271083708 0.0 15 6.704947446621914E-5 0.0 0.0 16.793881869553907 0.0 16 6.704947446621914E-5 0.0 0.0 17.29051732692519 0.0 17 6.704947446621914E-5 0.0 0.0 17.805256142402357 0.0 18 6.704947446621914E-5 0.0 0.0 18.609849835996986 0.0 19 6.704947446621914E-5 0.0 0.0 18.929407631302986 0.0 20 1.3409894893243827E-4 0.0 0.0 19.3418289487447 0.0 21 1.3409894893243827E-4 0.0 0.0 19.758005036756522 0.0 22 1.3409894893243827E-4 0.0 0.0 20.14414296020748 0.0 23 1.3409894893243827E-4 0.0 0.0 20.601018079220296 0.0 24 1.3409894893243827E-4 0.0 0.0 20.942903349523547 0.0 25 1.3409894893243827E-4 0.0 0.0 21.205334992584326 0.0 26 1.3409894893243827E-4 0.0 0.0 21.4588490555411 0.0 27 2.011484233986574E-4 0.0 0.0 21.717257730133912 0.0 28 2.011484233986574E-4 0.0 0.0 21.970101298346023 0.0 29 2.011484233986574E-4 0.0 0.0 22.242053966781008 0.0 30 2.011484233986574E-4 0.0 0.0 22.612435263732404 0.0 31 2.6819789786487654E-4 0.0 0.0 22.90564261557318 0.0 32 2.6819789786487654E-4 0.0 0.0 23.159357826953354 0.0 33 2.6819789786487654E-4 0.0 0.0 23.4268181805991 0.0 34 2.6819789786487654E-4 0.0 0.0 23.693406891076787 0.0 35 2.6819789786487654E-4 0.0 0.0 24.005388095768105 0.0 36 2.6819789786487654E-4 0.0 0.0 24.254342794461177 0.0 37 2.6819789786487654E-4 0.0 0.0 24.508862599534943 0.0 38 2.6819789786487654E-4 0.0 0.0 24.780480020597597 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 65 0.0 44.000004 1 CGTCACT 65 0.0 44.000004 41 AACCGGA 25 4.4434797E-5 44.0 17 GTCGATC 30 2.528226E-6 44.0 44 GATCGCC 20 7.857237E-4 44.0 14 ACGTTAC 20 7.857237E-4 44.0 10 CGTCTAG 20 7.857237E-4 44.0 38 CTAAGCG 55 1.8189894E-12 44.0 1 TCGATTG 60 0.0 44.0 1 ACTTACG 35 1.4464786E-7 44.0 1 ACTCGTT 25 4.4434797E-5 44.0 10 ACTCGAT 20 7.857237E-4 44.0 16 TACTCGA 20 7.857237E-4 44.0 15 ATCGGTC 20 7.857237E-4 44.0 10 ATACGCC 20 7.857237E-4 44.0 23 TAATGCG 50 2.7284841E-11 44.0 1 GTACGAC 20 7.857237E-4 44.0 22 TACCGAA 20 7.857237E-4 44.0 42 CGTTTTT 5035 0.0 41.90268 1 CACGACG 405 0.0 41.827164 26 >>END_MODULE