##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547251_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1618169 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.404706183346732 31.0 31.0 33.0 30.0 34.0 2 31.823860795751248 31.0 31.0 34.0 30.0 34.0 3 31.951143545575277 33.0 31.0 34.0 30.0 34.0 4 35.62644692859646 37.0 35.0 37.0 33.0 37.0 5 35.496996296431334 37.0 35.0 37.0 33.0 37.0 6 35.560463091308755 37.0 35.0 37.0 33.0 37.0 7 35.97846578447616 37.0 35.0 37.0 35.0 37.0 8 35.97116803003889 37.0 35.0 37.0 35.0 37.0 9 37.652199492142046 39.0 37.0 39.0 35.0 39.0 10 37.11271257822885 39.0 37.0 39.0 33.0 39.0 11 36.8918870649481 39.0 37.0 39.0 33.0 39.0 12 36.38228083716843 38.0 35.0 39.0 32.0 39.0 13 36.25259722562971 38.0 35.0 39.0 32.0 39.0 14 37.260282455046415 39.0 35.0 41.0 32.0 41.0 15 37.419893719382834 39.0 35.0 41.0 32.0 41.0 16 37.48949213586467 39.0 35.0 41.0 33.0 41.0 17 37.386293397043204 39.0 35.0 41.0 32.0 41.0 18 37.328811143953445 39.0 35.0 41.0 32.0 41.0 19 37.30961908181408 39.0 35.0 41.0 32.0 41.0 20 37.135714502008135 39.0 35.0 41.0 32.0 41.0 21 37.001650631052755 38.0 35.0 41.0 32.0 41.0 22 36.95225097007791 38.0 35.0 41.0 32.0 41.0 23 36.88203518915515 38.0 35.0 41.0 32.0 41.0 24 36.80062465663352 38.0 35.0 41.0 32.0 41.0 25 36.63960562833672 38.0 35.0 40.0 31.0 41.0 26 36.546544273187784 38.0 35.0 40.0 31.0 41.0 27 36.39502857859717 38.0 35.0 40.0 31.0 41.0 28 36.36236820752344 38.0 35.0 40.0 31.0 41.0 29 36.32976716276236 38.0 35.0 40.0 31.0 41.0 30 36.290598818788396 38.0 35.0 40.0 31.0 41.0 31 36.225938081869074 38.0 35.0 40.0 30.0 41.0 32 36.08154587067234 38.0 35.0 40.0 30.0 41.0 33 35.99766958828157 38.0 35.0 40.0 30.0 41.0 34 35.910353615722464 38.0 35.0 41.0 30.0 41.0 35 35.757261447969896 38.0 35.0 41.0 29.0 41.0 36 35.62347628708744 38.0 35.0 40.0 29.0 41.0 37 35.57180492272439 38.0 35.0 40.0 28.0 41.0 38 35.492658677801884 38.0 35.0 40.0 28.0 41.0 39 35.434740129121245 38.0 35.0 40.0 27.0 41.0 40 35.35502163247473 38.0 35.0 40.0 27.0 41.0 41 35.36445760609677 38.0 35.0 40.0 27.0 41.0 42 35.20794428764857 38.0 34.0 40.0 27.0 41.0 43 35.18152862896274 37.0 34.0 40.0 27.0 41.0 44 34.96174565203017 37.0 34.0 40.0 26.0 41.0 45 34.80219803988335 37.0 34.0 40.0 25.0 41.0 46 34.83815720113289 37.0 34.0 40.0 26.0 41.0 47 34.72712491711311 37.0 34.0 40.0 26.0 41.0 48 34.7012394873465 37.0 34.0 40.0 26.0 41.0 49 34.64229755977281 36.0 34.0 40.0 26.0 41.0 50 34.04963573026056 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 1.0 12 1.0 13 3.0 14 17.0 15 26.0 16 64.0 17 206.0 18 495.0 19 1028.0 20 1833.0 21 3194.0 22 4911.0 23 7327.0 24 10869.0 25 16758.0 26 22278.0 27 26829.0 28 28807.0 29 32168.0 30 37982.0 31 46544.0 32 59193.0 33 75870.0 34 123925.0 35 215254.0 36 121718.0 37 151604.0 38 222065.0 39 407196.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.38452287740032 26.011621777453403 28.22393705478229 12.379918290363985 2 32.18600776556713 25.939132439195163 28.346915557027724 13.527944238209976 3 29.18100643381501 25.86967121481131 31.28455680463536 13.66476554673832 4 24.873730741350254 29.208074063957472 30.762485253394424 15.155709941297848 5 22.472621833689807 31.70120055445383 30.588152411769105 15.238025200087261 6 19.67118391218717 41.59818906430664 27.11984965723605 11.610777366270149 7 85.40974397606183 3.7648107212534665 8.273610481970673 2.5518348207140296 8 84.0023508051384 3.298728377567485 7.610391745237982 5.088529072056133 9 77.58472693519651 5.120107973889007 12.451109865533203 4.84405522538128 10 41.201815137973846 23.22989749525544 19.049864383757196 16.51842298301352 11 35.0478843680728 24.796791929643938 24.49373334923608 15.661590353047178 12 31.730678316047335 20.550387505878557 27.918344746438724 19.800589431635384 13 21.76515555544569 32.47652130278111 29.658274259363516 16.100048882409688 14 17.176574263874787 36.21469698158845 28.297785954371886 18.310942800164877 15 15.865153763296663 24.7985222804293 42.81851895568386 16.517805000590176 16 16.63441828387517 21.21125790940254 41.83314598166199 20.3211778250603 17 16.63571604696419 23.618608439538765 29.634914523761115 30.11076098973593 18 20.397127864889267 24.105640387376102 33.4883439245221 22.008887823212532 19 24.75983658072797 29.36090111725042 25.884317398244562 19.994944903777046 20 26.610137754461988 24.46926124527166 25.41638110728855 23.504219892977805 21 21.738520512999568 30.92550901667255 26.962882121706695 20.373088348621188 22 21.234432250277937 26.22303356447936 25.092867308668005 27.449666876574696 23 18.81867715918424 31.79636984764879 24.2903553337136 25.09459765945337 24 19.277405512032427 25.649978463312546 34.17912467733593 20.8934913473191 25 19.209242050737593 26.34730982981382 31.57482314888 22.86862497056859 26 17.307524739381364 31.03489190560442 29.360097740100077 22.29748561491414 27 20.86951362929336 29.69010035416573 26.642211042233537 22.79817497430738 28 18.715350498001136 28.37021349438779 33.085604779228866 19.828831228382203 29 19.174017052606988 24.72331381950835 31.72400410587522 24.378665022009443 30 21.60342955525659 27.042910845529732 29.712224124921438 21.64143547429224 31 26.00698690927833 26.06544804652666 23.8116661485914 24.11589889560361 32 25.583607151045413 25.710726135527253 27.02350619743673 21.682160515990603 33 25.856075601497743 26.15270716470282 25.261576510240896 22.729640723558543 34 20.683748112836177 25.490477199847483 28.399135071800284 25.426639615516056 35 20.25573348642818 25.6471975424075 28.997218461112528 25.09985051005179 36 27.335834514194744 24.233871740219964 26.570895870579648 21.85939787500564 37 21.469945351814303 28.158801707361842 27.9384291751974 22.43282376562646 38 21.568019162398983 28.5461530903138 27.502566172012937 22.383261575274275 39 20.531415445481898 26.948359534758115 28.3353592857112 24.184865734048792 40 22.916580406620074 23.06736811791599 30.235531641009068 23.780519834454868 41 17.475863151500246 22.219310838361135 30.68585543289978 29.61897057723884 42 21.87472383910457 25.17271063776404 27.777382955673975 25.175182567457416 43 21.073138837785176 25.344756944422986 29.190894152588516 24.391210065203325 44 21.863661953726712 27.97872162919942 27.438666789439175 22.71894962763469 45 19.650975886943822 28.57760839566201 26.64777288404363 25.123642833350534 46 23.392241477867888 26.8230944975463 27.062562686592067 22.722101337993745 47 22.042815058254114 24.51907062859318 28.681862030480126 24.756252282672577 48 22.191192638098986 22.451610431296114 29.73490407985816 25.622292850746742 49 22.235007591914073 21.632289334426748 29.891439027691174 26.241264045968006 50 20.315863176219544 25.22826725762266 30.052732440183938 24.403137125973863 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1293.0 1 1350.0 2 1407.0 3 5942.5 4 10478.0 5 7817.5 6 5157.0 7 5853.0 8 6549.0 9 7337.0 10 8125.0 11 8430.0 12 8735.0 13 8821.5 14 8908.0 15 8720.0 16 8532.0 17 8275.0 18 8018.0 19 7715.0 20 7412.0 21 7514.5 22 7617.0 23 7688.0 24 7759.0 25 7919.5 26 8080.0 27 9583.0 28 11086.0 29 13028.0 30 14970.0 31 16800.5 32 18631.0 33 21973.0 34 25315.0 35 30612.0 36 35909.0 37 39442.5 38 42976.0 39 50746.5 40 58517.0 41 76643.5 42 94770.0 43 112654.0 44 130538.0 45 147664.0 46 164790.0 47 182075.5 48 199361.0 49 195812.0 50 192263.0 51 166347.5 52 140432.0 53 118953.5 54 97475.0 55 84424.0 56 71373.0 57 63828.0 58 56283.0 59 51702.5 60 47122.0 61 42461.0 62 37800.0 63 31421.0 64 25042.0 65 21926.0 66 18810.0 67 15414.0 68 12018.0 69 10718.0 70 9418.0 71 7612.0 72 5806.0 73 5012.0 74 4218.0 75 3224.5 76 2231.0 77 1799.0 78 1367.0 79 1081.5 80 796.0 81 667.0 82 538.0 83 352.5 84 167.0 85 108.5 86 50.0 87 31.5 88 13.0 89 9.5 90 6.0 91 4.5 92 3.0 93 2.5 94 2.0 95 2.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1618169.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.150915530680255 #Duplication Level Percentage of deduplicated Percentage of total 1 77.50877043847301 22.59451619938813 2 8.876195209649136 5.174984335806214 3 3.213695822386252 2.8104652637904493 4 1.6459955151764714 1.9192910490715138 5 1.0670362002722769 1.5552541071157582 6 0.7893812135534176 1.3806711046680928 7 0.6027510723290833 1.2299521916844434 8 0.5110241176285655 1.1917456709704577 9 0.4230929771023904 1.1100192873422237 >10 4.020789543993261 25.716374606005388 >50 1.068515717861366 22.35483107100737 >100 0.2671988782871865 10.53582056205521 >500 0.0019222938303406452 0.3793056888302236 >1k 0.0034174112539389254 1.64971824216113 >5k 2.1358820337118284E-4 0.3970506201034695 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6377 0.3940873913664148 No Hit CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC 2903 0.1794002974967386 TruSeq Adapter, Index 19 (95% over 21bp) GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2659 0.16432152636714706 No Hit GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG 2547 0.15740012322569522 No Hit CCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG 2015 0.12452345830379892 No Hit GAGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTC 1865 0.1152537219536402 No Hit GAGAGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCT 1728 0.10678736275382857 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18768126196954707 0.0 2 0.0 0.0 0.0 0.6504882988118051 0.0 3 0.0 0.0 0.0 1.0448228831475574 0.0 4 0.0 0.0 0.0 1.653226578929642 0.0 5 0.0 0.0 0.0 2.657509815105839 0.0 6 0.0 0.0 0.0 4.438040773244327 0.0 7 0.0 0.0 0.0 5.339738927145434 0.0 8 0.0 0.0 0.0 8.163609610615454 0.0 9 0.0 0.0 0.0 9.522305766579388 0.0 10 0.0 0.0 0.0 11.544220659276009 0.0 11 0.0 0.0 0.0 12.872079492315079 0.0 12 0.0 0.0 0.0 14.02165039621943 0.0 13 0.0 0.0 0.0 14.614295540206246 0.0 14 0.0 0.0 0.0 14.872797587891005 0.0 15 0.0 0.0 0.0 15.13024906545608 0.0 16 0.0 0.0 0.0 15.678893860900809 0.0 17 0.0 0.0 0.0 16.25602764606169 0.0 18 0.0 0.0 0.0 17.109832162153644 0.0 19 0.0 0.0 0.0 17.456149512195573 0.0 20 0.0 0.0 0.0 17.865192078206913 0.0 21 0.0 0.0 0.0 18.341718324847406 0.0 22 0.0 0.0 0.0 18.80829505447206 0.0 23 0.0 0.0 0.0 19.382215331031556 0.0 24 0.0 0.0 0.0 19.791319695285228 0.0 25 0.0 0.0 0.0 20.13417634375643 0.0 26 0.0 0.0 0.0 20.46078005449369 0.0 27 0.0 0.0 0.0 20.817912096944138 0.0 28 0.0 0.0 0.0 21.15230238621553 0.0 29 0.0 0.0 0.0 21.50708609545727 0.0 30 0.0 0.0 0.0 21.96223015025007 0.0 31 0.0 0.0 0.0 22.350570305079383 0.0 32 0.0 0.0 0.0 22.696084277970964 0.0 33 0.0 0.0 0.0 23.05117697842438 0.0 34 0.0 0.0 0.0 23.386308846603786 0.0 35 0.0 0.0 0.0 23.7744636067061 0.0 36 0.0 0.0 0.0 24.128320342312826 0.0 37 0.0 0.0 0.0 24.498059226199487 0.0 38 0.0 0.0 0.0 24.865449776877448 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATA 20 7.857434E-4 44.000004 18 CCTTACG 20 7.857434E-4 44.000004 1 GGCGTAA 20 7.857434E-4 44.000004 8 TCGACTT 20 7.857434E-4 44.000004 11 GATCGGA 25 4.4436485E-5 44.0 10 CGCGACA 25 4.4436485E-5 44.0 17 GCGATCG 30 2.5283607E-6 44.0 9 TCGGTAC 50 2.7284841E-11 44.0 36 TACGTAG 45 4.802132E-10 44.0 1 GTCGGAA 25 4.4436485E-5 44.0 17 CGACGGT 510 0.0 42.274506 28 CGGTCTA 510 0.0 42.274506 31 CGTTTTT 6100 0.0 41.908195 1 CGCATCG 180 0.0 41.555557 21 GCTACGA 180 0.0 41.555557 10 CACGACG 535 0.0 41.121494 26 TCACGAC 545 0.0 40.77064 25 TTCGGTA 55 7.8216544E-11 40.000004 35 CTAAGCG 50 1.3478711E-9 39.6 1 TCGATTG 50 1.3478711E-9 39.6 1 >>END_MODULE