##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547250_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1367565 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.371012712375645 31.0 31.0 33.0 30.0 34.0 2 31.812493007644974 31.0 31.0 34.0 30.0 34.0 3 31.986610508458465 33.0 31.0 34.0 30.0 34.0 4 35.677373287558545 37.0 35.0 37.0 33.0 37.0 5 35.55541126015948 37.0 35.0 37.0 33.0 37.0 6 35.61261073513873 37.0 35.0 37.0 33.0 37.0 7 35.91921700248251 37.0 35.0 37.0 35.0 37.0 8 35.901355328631546 37.0 35.0 37.0 35.0 37.0 9 37.58939136348181 39.0 37.0 39.0 35.0 39.0 10 37.14414159473224 39.0 37.0 39.0 33.0 39.0 11 36.9107691407721 39.0 37.0 39.0 33.0 39.0 12 36.51227619893753 39.0 35.0 39.0 32.0 39.0 13 36.42437178488774 39.0 35.0 39.0 32.0 39.0 14 37.43140472299306 40.0 35.0 41.0 32.0 41.0 15 37.54961190144527 40.0 35.0 41.0 32.0 41.0 16 37.582341607163094 40.0 35.0 41.0 33.0 41.0 17 37.46665716071997 39.0 35.0 41.0 32.0 41.0 18 37.41961734908396 39.0 36.0 41.0 32.0 41.0 19 37.40481220271066 39.0 35.0 41.0 32.0 41.0 20 37.237357639307824 39.0 35.0 41.0 32.0 41.0 21 37.13040038316277 39.0 35.0 41.0 32.0 41.0 22 37.10540851805947 39.0 35.0 41.0 32.0 41.0 23 37.02571870441259 39.0 35.0 41.0 32.0 41.0 24 36.931440918713186 39.0 35.0 41.0 31.0 41.0 25 36.71448450347881 38.0 35.0 41.0 31.0 41.0 26 36.63100620445829 38.0 35.0 41.0 31.0 41.0 27 36.47295448479597 38.0 35.0 40.0 31.0 41.0 28 36.40567212527375 38.0 35.0 40.0 30.0 41.0 29 36.34178777608377 38.0 35.0 40.0 30.0 41.0 30 36.27569731603251 38.0 35.0 40.0 30.0 41.0 31 36.19239304895928 38.0 35.0 40.0 30.0 41.0 32 36.090890743767204 38.0 35.0 40.0 30.0 41.0 33 35.995214852676106 38.0 35.0 40.0 30.0 41.0 34 35.85346656283248 38.0 35.0 41.0 29.0 41.0 35 35.68388339859531 38.0 35.0 40.0 28.0 41.0 36 35.54540807932347 38.0 35.0 40.0 27.0 41.0 37 35.496159231919506 38.0 34.0 40.0 27.0 41.0 38 35.358045138622295 38.0 34.0 40.0 27.0 41.0 39 35.2992676764907 38.0 34.0 40.0 27.0 41.0 40 35.16113237762008 37.0 34.0 40.0 26.0 41.0 41 35.122650842921544 37.0 34.0 40.0 26.0 41.0 42 34.9530099117775 37.0 34.0 40.0 26.0 41.0 43 34.938435833031704 37.0 34.0 40.0 26.0 41.0 44 34.70206388727409 37.0 34.0 40.0 26.0 41.0 45 34.54613930599277 36.0 34.0 40.0 24.0 41.0 46 34.59428034499274 36.0 34.0 40.0 25.0 41.0 47 34.47355847802481 36.0 33.0 40.0 24.0 41.0 48 34.41712825350166 36.0 33.0 40.0 24.0 41.0 49 34.32178872667844 36.0 33.0 40.0 24.0 41.0 50 33.74814871688 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 4.0 13 5.0 14 19.0 15 32.0 16 79.0 17 206.0 18 461.0 19 965.0 20 1671.0 21 2783.0 22 4555.0 23 6705.0 24 9471.0 25 13716.0 26 18680.0 27 23246.0 28 25949.0 29 28868.0 30 33648.0 31 40730.0 32 50166.0 33 64384.0 34 104529.0 35 146722.0 36 113263.0 37 148388.0 38 207791.0 39 320526.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.23069470189717 24.24835382596074 27.361770738502372 14.159180733639717 2 33.17421841009385 25.15098002654353 28.430970374351496 13.243831189011127 3 30.255673404920426 25.030473871443036 30.6690358410752 14.044816882561339 4 26.583818685035084 27.726799091816478 30.301960053087058 15.387422170061388 5 23.29885599587588 32.087615579515415 29.016756059126987 15.596772365481716 6 21.40315085571801 40.89516768855594 26.467114908614946 11.234566547111106 7 85.98911203489413 3.5400876740776486 8.081736517094251 2.389063773933963 8 84.72708792635085 3.357061638752089 7.517741387063868 4.398109047833192 9 78.37397125547963 4.667858566137624 11.818743533214143 5.139426645168602 10 44.16119160698029 22.084580988837825 17.346451539780556 16.407775864401327 11 34.299576254145144 23.268656334433828 24.11351562814199 18.31825178327904 12 30.374717106682315 18.187947190809943 29.382369393776532 22.05496630873121 13 24.619378237963094 22.45458168350316 32.15876393443822 20.76727614409553 14 20.929096606011413 25.625034276250126 32.04176766735036 21.4041014503881 15 20.456870422978067 20.530066212574905 38.120674337234426 20.8923890272126 16 23.916961899434398 18.47722046118466 35.2043230120689 22.401494627312047 17 22.680238233648858 20.982329907536386 29.950825006489634 26.386606852325116 18 24.40110707717732 21.118118700025228 31.480112462661737 23.000661760135717 19 27.049975686713246 25.84308606903511 25.815518823602535 21.29141942064911 20 27.943095940595146 24.07234756666045 24.953110089831195 23.031446402913208 21 25.902315429248336 26.924131576926875 26.261420846541117 20.91213214728368 22 24.47145108276389 21.975116356443753 27.103720846906725 26.449711713885627 23 23.98767151835562 25.6041943161751 25.33780844054944 25.07032572491984 24 24.394745405154417 23.33958532135584 29.675664410832393 22.590004862657352 25 25.125533338451923 22.412243659350743 27.24572506608461 25.216497936112724 26 21.303411538025614 24.332298647596275 28.386292424857317 25.97799738952079 27 23.42989181501428 22.15989733577563 27.82434472950097 26.585866119709117 28 23.152830030016855 24.307583186173968 29.376665825756 23.16292095805318 29 24.6171845579552 22.940701173253192 27.887668959062275 24.554445309729335 30 25.73208586063551 23.003221053478264 28.759144903532924 22.50554818235331 31 29.064724528633008 21.852709012003086 24.02766961716628 25.05489684219763 32 28.676955025903705 22.5505186225152 25.328375616515487 23.44415073506561 33 28.626719753722856 22.852368991601864 23.842523024499748 24.67838823017553 34 23.71514333870785 23.581840716894625 26.85832117668996 25.844694767707566 35 23.831262133792546 26.167238851535394 26.12928818739877 23.872210827273292 36 26.974513094441583 26.058871059145268 22.450194323487366 24.516421522925786 37 25.359964608629205 28.38022324350214 23.345362012043303 22.914450135825355 38 24.65491585409103 28.855447455879613 22.56697122257443 23.92266546745493 39 25.034861231458834 26.42229071378691 22.46386826220326 26.078979792550992 40 25.362012043303245 23.421263340316546 26.342660129500246 24.874064486879966 41 23.222442808934126 22.852661482269582 26.46930858862284 27.455587120173448 42 24.40074146384267 24.38355763711414 25.01533747938855 26.200363419654643 43 23.36459327344587 22.491069894301184 27.71597693711085 26.428359895142094 44 24.52029702427307 23.678143269241318 26.675807000032904 25.125752706452708 45 22.95437511196908 23.862266144570825 27.649947168873148 25.53341157458695 46 25.049558887511747 23.870967741935484 26.378124622961245 24.701348747591524 47 23.824607971101923 23.615184653014666 27.12602326032035 25.434184115563063 48 23.742491216139637 22.842570554233255 27.751148939904134 25.663789289722978 49 25.199460354718056 21.184879694932235 27.173918607159443 26.441741343190266 50 22.959713066654967 22.256199888122318 28.664377927191758 26.119709118030954 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 724.0 1 968.0 2 1212.0 3 7450.5 4 13689.0 5 9467.5 6 5246.0 7 5378.0 8 5510.0 9 5761.5 10 6013.0 11 5966.0 12 5919.0 13 5878.0 14 5837.0 15 5600.0 16 5363.0 17 5120.0 18 4877.0 19 4669.5 20 4462.0 21 4264.5 22 4067.0 23 4244.0 24 4421.0 25 4835.5 26 5250.0 27 6058.5 28 6867.0 29 7737.0 30 8607.0 31 10038.5 32 11470.0 33 13344.0 34 15218.0 35 17747.0 36 20276.0 37 22183.5 38 24091.0 39 28611.5 40 33132.0 41 40957.0 42 48782.0 43 56910.5 44 65039.0 45 78151.0 46 91263.0 47 108939.0 48 126615.0 49 130892.5 50 135170.0 51 122630.5 52 110091.0 53 98655.0 54 87219.0 55 83983.0 56 80747.0 57 82193.5 58 83640.0 59 81048.5 60 78457.0 61 74939.5 62 71422.0 63 66720.5 64 62019.0 65 52378.5 66 42738.0 67 36791.0 68 30844.0 69 26498.0 70 22152.0 71 19108.0 72 16064.0 73 13096.5 74 10129.0 75 8224.5 76 6320.0 77 4946.5 78 3573.0 79 2728.5 80 1884.0 81 1286.5 82 689.0 83 467.5 84 246.0 85 184.5 86 123.0 87 76.5 88 30.0 89 36.5 90 43.0 91 28.0 92 13.0 93 6.5 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1367565.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.11005752760018 #Duplication Level Percentage of deduplicated Percentage of total 1 74.4503421628653 21.67253743310526 2 6.911167701896479 4.023689787701977 3 2.9487411064376525 2.5751406972719835 4 1.8451826852453297 2.1485349646569327 5 1.3428880562521197 1.9545774285313195 6 1.1046796782462736 1.9294373389991928 7 0.9592740016248587 1.9547164960421606 8 0.7795533776573353 1.815427493555205 9 0.7275006752059536 1.9059827855951956 >10 8.677900499791749 52.17336648627452 >50 0.20642774838810887 3.7538028015753926 >100 0.04102433695294158 2.1879304399481527 >500 0.004051786236995274 0.8310891956725395 >1k 0.0010129465592488185 0.4852811934639283 >5k 2.532366398122046E-4 0.5884854576063404 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7983 0.5837382501014577 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 2947 0.21549249944243964 No Hit CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC 1385 0.10127489369792296 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10690533905152588 0.0 2 0.0 0.0 0.0 0.32049664915378795 0.0 3 0.0 0.0 0.0 0.5365741299316669 0.0 4 0.0 0.0 0.0 0.8456636430443891 0.0 5 0.0 0.0 0.0 1.396716061028178 0.0 6 0.0 0.0 0.0 2.663785633589628 0.0 7 0.0 0.0 0.0 3.3590359507591963 0.0 8 0.0 0.0 0.0 5.510158566503238 0.0 9 0.0 0.0 0.0 6.741251786935173 0.0 10 0.0 0.0 0.0 8.40896045160559 0.0 11 0.0 0.0 0.0 9.265738740023327 0.0 12 0.0 0.0 0.0 10.013344886714709 0.0 13 0.0 0.0 0.0 10.444987989601957 0.0 14 0.0 0.0 0.0 10.694482529166804 0.0 15 0.0 0.0 0.0 10.867783249790687 0.0 16 0.0 0.0 0.0 11.150329234807852 0.0 17 0.0 0.0 0.0 11.416203251764998 0.0 18 0.0 0.0 0.0 11.832856207931616 0.0 19 0.0 0.0 0.0 12.038915883340097 0.0 20 0.0 0.0 0.0 12.272762172181944 0.0 21 0.0 0.0 0.0 12.508582773030898 0.0 22 0.0 0.0 0.0 12.757565453927235 0.0 23 0.0 0.0 0.0 13.039160844274312 0.0 24 0.0 0.0 0.0 13.27132531177677 0.0 25 0.0 0.0 0.0 13.461444245794533 0.0 26 0.0 0.0 0.0 13.649881358472907 0.0 27 0.0 0.0 0.0 13.872393633940616 0.0 28 0.0 0.0 0.0 14.056589631937056 0.0 29 0.0 0.0 0.0 14.257384475326583 0.0 30 0.0 0.0 0.0 14.565304025768429 0.0 31 0.0 0.0 0.0 14.78635384789754 0.0 32 0.0 0.0 0.0 15.010840435372359 0.0 33 0.0 0.0 0.0 15.236935721519636 0.0 34 0.0 0.0 0.0 15.466394650345688 0.0 35 0.0 0.0 0.0 15.733365507306782 0.0 36 0.0 0.0 0.0 15.969771089491175 0.0 37 0.0 0.0 0.0 16.203105519664515 0.0 38 0.0 0.0 0.0 16.496839272721953 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAGCAT 20 7.857007E-4 44.0 32 TACTACG 35 1.4463512E-7 44.0 1 CACGACG 150 0.0 42.533333 26 CGTTTTT 5200 0.0 41.588463 1 CTCACGA 160 0.0 41.25 24 TCACGAC 165 0.0 40.0 25 TATAGCG 50 1.3478711E-9 39.6 1 CATATGC 1235 0.0 39.19028 33 GCCAGTA 1280 0.0 38.84375 25 CGGTCTA 160 0.0 38.5 31 TAACGGG 345 0.0 38.260868 3 AGGGTAC 885 0.0 38.0339 6 TAGCATA 1265 0.0 37.739132 30 TACGGGT 175 0.0 37.714287 4 ATACGAG 35 7.2912226E-6 37.714287 1 CCAGTAG 1335 0.0 37.573032 26 CGTATGG 165 0.0 37.333332 2 GGTACCT 1430 0.0 37.23077 8 TGCCAGT 1345 0.0 37.130116 24 ACGGGAT 320 0.0 37.125 5 >>END_MODULE