##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547248_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1454583 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.445506375366687 31.0 31.0 33.0 30.0 34.0 2 31.87297459134336 31.0 31.0 34.0 30.0 34.0 3 31.99548049165981 33.0 31.0 34.0 30.0 34.0 4 35.65079682630692 37.0 35.0 37.0 33.0 37.0 5 35.50719209560403 37.0 35.0 37.0 33.0 37.0 6 35.570096034396116 37.0 35.0 37.0 33.0 37.0 7 36.00690919665636 37.0 35.0 37.0 35.0 37.0 8 36.00874752420453 37.0 35.0 37.0 35.0 37.0 9 37.66813719120875 39.0 37.0 39.0 35.0 39.0 10 37.17382645060474 39.0 37.0 39.0 33.0 39.0 11 36.89765932916857 39.0 37.0 39.0 33.0 39.0 12 36.321103711510446 38.0 35.0 39.0 32.0 39.0 13 36.15601859776994 38.0 35.0 39.0 32.0 39.0 14 37.16760473620275 39.0 35.0 41.0 32.0 41.0 15 37.36107117985017 39.0 35.0 41.0 32.0 41.0 16 37.44618217042272 39.0 35.0 41.0 33.0 41.0 17 37.36111449123219 39.0 35.0 41.0 32.0 41.0 18 37.29124841965017 39.0 35.0 41.0 32.0 41.0 19 37.27171567383917 39.0 35.0 41.0 32.0 41.0 20 37.09980592375959 39.0 35.0 41.0 32.0 41.0 21 36.95760365685561 38.0 35.0 41.0 32.0 41.0 22 36.908239681063236 38.0 35.0 41.0 32.0 41.0 23 36.847909675831495 38.0 35.0 41.0 32.0 41.0 24 36.77467081630955 38.0 35.0 41.0 32.0 41.0 25 36.60183296518659 38.0 35.0 41.0 31.0 41.0 26 36.50074763695162 38.0 35.0 40.0 31.0 41.0 27 36.34594863270092 38.0 35.0 40.0 31.0 41.0 28 36.324783116535805 38.0 35.0 40.0 31.0 41.0 29 36.30270668638366 38.0 35.0 40.0 31.0 41.0 30 36.29739519848644 38.0 35.0 40.0 31.0 41.0 31 36.17999522887315 38.0 35.0 40.0 30.0 41.0 32 36.024456493716755 38.0 35.0 40.0 30.0 41.0 33 35.847653244950614 38.0 35.0 40.0 30.0 41.0 34 35.79332083490595 38.0 35.0 40.0 30.0 41.0 35 35.608765536239595 38.0 35.0 40.0 29.0 41.0 36 35.468728150954604 38.0 35.0 40.0 27.0 41.0 37 35.43486689999814 38.0 35.0 40.0 27.0 41.0 38 35.350573325826026 38.0 34.0 40.0 27.0 41.0 39 35.30285105765707 38.0 35.0 40.0 27.0 41.0 40 35.20877323604085 38.0 34.0 40.0 27.0 41.0 41 35.22740194268736 38.0 34.0 40.0 27.0 41.0 42 35.058712359487224 37.0 34.0 40.0 26.0 41.0 43 35.03007528618168 37.0 34.0 40.0 26.0 41.0 44 34.80462991799024 37.0 34.0 40.0 25.0 41.0 45 34.64033678380677 37.0 34.0 40.0 24.0 41.0 46 34.69290511438673 37.0 34.0 40.0 25.0 41.0 47 34.58411860993838 37.0 34.0 40.0 24.0 41.0 48 34.564497866398824 37.0 34.0 40.0 24.0 41.0 49 34.499368547549366 36.0 34.0 40.0 24.0 41.0 50 33.86085771661019 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 1.0 13 6.0 14 6.0 15 29.0 16 83.0 17 210.0 18 511.0 19 1097.0 20 1875.0 21 3159.0 22 4746.0 23 7001.0 24 10578.0 25 15636.0 26 21425.0 27 25442.0 28 27522.0 29 30296.0 30 35302.0 31 42457.0 32 52820.0 33 67497.0 34 111487.0 35 197737.0 36 103031.0 37 126286.0 38 191340.0 39 377000.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.870084415946014 25.616001286966778 29.04839393833147 14.46552035875574 2 31.845965476016154 26.60755694243642 28.249195817632955 13.29728176391447 3 27.787620232052763 26.680292564948164 31.61359647404101 13.918490728958059 4 24.395239047892076 29.158184854353447 31.07241044340543 15.374165654349047 5 23.060217258142025 31.977480831276043 30.53225563615139 14.430046274430541 6 20.22428421066381 40.67550631349328 27.361243737896018 11.73896573794689 7 85.70236280776003 3.82027013927703 8.088641211948715 2.388725841014229 8 85.00944944358623 3.2864401687631437 7.334473178911069 4.369637208739549 9 78.20722502600401 5.549081764326958 11.726866050270077 4.5168271593989475 10 42.00358453247425 30.314804999095962 15.008562591478109 12.673047876951676 11 35.77967018726329 22.75580011590951 27.810788384024836 13.653741312802364 12 33.963892057036276 21.010351420303962 27.60255000917789 17.42320651348187 13 21.39699144015845 34.54027717909531 29.285987805439774 14.776743575306462 14 16.298141804214676 37.143978721049265 28.82791837935683 17.729961095379227 15 14.725663643807193 25.022979094352127 44.23638939819866 16.014967863642017 16 15.823847796928742 21.55703730897446 43.667841573839375 18.95127332025742 17 16.36585880626956 23.41818926798952 30.34890411891243 29.867047806828484 18 20.465315489043938 24.151732833396238 33.62654451481971 21.756407162740114 19 24.196694172831666 29.145947670225762 26.79950198785494 19.857856169087633 20 27.32549466066907 25.592008156289463 25.909281216678593 21.173215966362868 21 21.842823682113703 31.170376664652345 26.645643459328205 20.341156193905746 22 20.672316395833032 26.818476498075395 26.082183003651217 26.427024102440356 23 18.44006151591212 32.34205267076543 25.130707563611015 24.08717824971143 24 19.658830056449165 25.982154335641212 34.712285239137266 19.646730368772356 25 18.43951153010863 27.517439706087586 31.4941120582325 22.548936705571286 26 17.709474124199172 32.87746385046436 28.72603350926004 20.687028516076428 27 20.302657187661342 29.786337390166118 28.304056901531226 21.60694852064131 28 18.044140485623714 28.91735982064963 34.60380053939858 18.43469915432808 29 18.286065490934515 24.750461128722115 33.60805124217731 23.35542213816606 30 21.900434695029432 27.339519298658104 30.223301111040072 20.536744895272392 31 25.254798110523772 26.27302807746275 26.358344625229364 22.113829186784116 32 28.2287088464529 26.279009173075718 25.928324475124487 19.56395750534689 33 25.364589026545755 26.82218890224896 26.74147848558659 21.071743585618698 34 20.19740365451817 25.857788795826707 30.819210729123053 23.12559682053207 35 21.719145624553565 25.148238361097302 31.610709048572684 21.521906965776445 36 26.14220020445722 24.99712976158803 27.92766036726677 20.93300966668798 37 22.77525586370802 27.540195368707042 30.32649219742015 19.358056570164784 38 20.127486709249318 30.215945050918375 27.579106864304066 22.077461375528245 39 22.14263469324198 28.893779179324934 27.5191584117235 21.444427715709587 40 24.16747617702118 26.271653112954024 27.605368686420782 21.955502023604016 41 19.041539740255455 24.446731468743963 28.822212276645608 27.689516514354974 42 23.317335621274278 27.269327360487505 25.871950930266614 23.541386087971606 43 22.90216508786367 26.225935543038798 27.90029857354307 22.971600795554465 44 22.396728134455028 29.97140761304099 27.293526735841134 20.338337516662854 45 19.43746077054386 30.2135388630281 26.440292509949586 23.908707856478454 46 23.24597496327126 28.59960552268245 26.698510844688823 21.455908669357473 47 22.20354562097866 25.646456750835117 28.703277846640585 23.44671978154564 48 23.634058695859913 22.465476359891458 29.450639805360023 24.449825138888603 49 21.69982737320593 22.286180987953248 30.007569179620553 26.006422459220268 50 19.57310101932994 27.240796846931385 29.791287262397535 23.394814871341133 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1268.0 1 1210.5 2 1153.0 3 6089.0 4 11025.0 5 8099.5 6 5174.0 7 5631.0 8 6088.0 9 6761.5 10 7435.0 11 7854.0 12 8273.0 13 8229.0 14 8185.0 15 7877.5 16 7570.0 17 7325.0 18 7080.0 19 7046.0 20 7012.0 21 6780.0 22 6548.0 23 7073.5 24 7599.0 25 8443.5 26 9288.0 27 10356.5 28 11425.0 29 14066.0 30 16707.0 31 19428.0 32 22149.0 33 25426.0 34 28703.0 35 33077.5 36 37452.0 37 40612.5 38 43773.0 39 53843.0 40 63913.0 41 81798.0 42 99683.0 43 116049.5 44 132416.0 45 141876.5 46 151337.0 47 160697.0 48 170057.0 49 164820.0 50 159583.0 51 139765.0 52 119947.0 53 102007.0 54 84067.0 55 70063.5 56 56060.0 57 51399.0 58 46738.0 59 41295.0 60 35852.0 61 32346.0 62 28840.0 63 24639.0 64 20438.0 65 15943.5 66 11449.0 67 9199.5 68 6950.0 69 5928.0 70 4906.0 71 3672.5 72 2439.0 73 2460.5 74 2482.0 75 2018.0 76 1554.0 77 1377.5 78 1201.0 79 785.5 80 370.0 81 279.5 82 189.0 83 114.5 84 40.0 85 68.0 86 96.0 87 73.5 88 51.0 89 31.5 90 12.0 91 6.5 92 1.0 93 3.0 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1454583.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.2889002969383 #Duplication Level Percentage of deduplicated Percentage of total 1 78.18649485736472 21.336234627297053 2 7.822016807132355 4.269084735416209 3 2.8036081352488638 2.29522148623474 4 1.5342617571374875 1.6747326447972104 5 0.9955841763582095 1.358419866292431 6 0.7438938318223713 1.2180026764864844 7 0.6003010683190146 1.1467089201052196 8 0.48245067310831236 1.0532438653314806 9 0.3714858449733897 0.9123696166682438 >10 4.95183537776546 33.24247531018107 >50 1.3884189865287797 25.017657779235396 >100 0.11381815557632044 4.2847199130606946 >500 0.0025349255064139806 0.46319800569385067 >1k 0.0030419106076967767 1.2416279874849052 >5k 2.5349255064139806E-4 0.4863025657150195 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7030 0.4833000248181094 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2566 0.17640794646988173 No Hit CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTG 1737 0.11941566758308052 No Hit CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC 1736 0.11934691935764409 No Hit GAGAGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCT 1673 0.11501578115514893 No Hit AAGAGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCT 1502 0.10325983460551925 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1273904617337065 0.0 2 0.0 0.0 0.0 0.45559448996722773 0.0 3 0.0 0.0 0.0 0.7961731987793065 0.0 4 0.0 0.0 0.0 1.2787169931176152 0.0 5 0.0 0.0 0.0 2.0426472741672357 0.0 6 0.0 0.0 0.0 3.69391090092487 0.0 7 0.0 0.0 0.0 4.559451059169535 0.0 8 0.0 0.0 0.0 7.106091574011246 0.0 9 0.0 0.0 0.0 8.528629854741874 0.0 10 0.0 0.0 0.0 10.409168813330005 0.0 11 0.0 0.0 0.0 11.498278200693944 0.0 12 0.0 0.0 0.0 12.467284438220439 0.0 13 0.0 0.0 0.0 13.02799496487997 0.0 14 0.0 0.0 0.0 13.286832033648132 0.0 15 0.0 0.0 0.0 13.512119968403315 0.0 16 0.0 0.0 0.0 13.909828452553068 0.0 17 0.0 0.0 0.0 14.313036794737735 0.0 18 0.0 0.0 0.0 14.918639912607256 0.0 19 0.0 0.0 0.0 15.187926711641756 0.0 20 0.0 0.0 0.0 15.519568151147098 0.0 21 0.0 0.0 0.0 15.838284924270392 0.0 22 0.0 0.0 0.0 16.17315753037125 0.0 23 0.0 0.0 0.0 16.55952255732399 0.0 24 0.0 0.0 0.0 16.83857160437046 0.0 25 0.0 0.0 0.0 17.084690251432885 0.0 26 0.0 0.0 0.0 17.315271799546675 0.0 27 0.0 0.0 0.0 17.581121187309353 0.0 28 0.0 0.0 0.0 17.822496206816663 0.0 29 0.0 0.0 0.0 18.080783289781333 0.0 30 0.0 0.0 0.0 18.450167505051276 0.0 31 0.0 0.0 0.0 18.71498566943241 0.0 32 0.0 0.0 0.0 18.97286026304446 0.0 33 0.0 0.0 0.0 19.212654073366732 0.0 34 0.0 0.0 0.0 19.474584812279534 0.0 35 0.0 0.0 0.0 19.758446235106558 0.0 36 0.0 0.0 0.0 20.011164711810878 0.0 37 0.0 0.0 0.0 20.27515789748677 0.0 38 0.0 0.0 0.0 20.524163970017526 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACTGCG 20 7.857171E-4 44.000004 1 TGCGCAA 20 7.857171E-4 44.000004 13 CTACGCG 30 2.5281824E-6 44.000004 1 TTACGAG 40 8.314601E-9 44.000004 1 TACTACG 30 2.5281824E-6 44.000004 1 TCGTTAG 85 0.0 44.0 1 CGTGCCG 25 4.443426E-5 44.0 2 TACGAAG 50 2.7284841E-11 44.0 1 CGTTTTT 6190 0.0 41.5832 1 CGGTCTA 170 0.0 41.411766 31 ACGGGAT 645 0.0 39.224804 5 CGACGGT 180 0.0 39.11111 28 GACCGAC 45 2.3515895E-8 39.11111 9 CGAGGGA 855 0.0 38.8538 4 ATTACGG 85 0.0 38.823532 2 TATTACG 40 4.1255407E-7 38.500004 1 CCGCATC 40 4.1255407E-7 38.500004 20 CGACAGG 155 0.0 38.322582 2 TAGGGAC 1285 0.0 38.17899 5 GCTACGA 220 0.0 38.0 10 >>END_MODULE