##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547247_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2630668 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.300904941254466 31.0 31.0 33.0 30.0 34.0 2 31.69556401643993 31.0 31.0 34.0 30.0 34.0 3 31.810000729852646 31.0 31.0 34.0 30.0 34.0 4 35.50303991229604 37.0 35.0 37.0 33.0 37.0 5 35.380498413330756 37.0 35.0 37.0 33.0 37.0 6 35.41980439949093 37.0 35.0 37.0 33.0 37.0 7 35.95241322736278 37.0 35.0 37.0 35.0 37.0 8 35.944501928787666 37.0 35.0 37.0 35.0 37.0 9 37.64130441393593 39.0 37.0 39.0 35.0 39.0 10 36.972667018415095 39.0 37.0 39.0 32.0 39.0 11 36.73618487775728 39.0 35.0 39.0 32.0 39.0 12 36.29072653789836 38.0 35.0 39.0 32.0 39.0 13 36.12333407332282 38.0 35.0 39.0 32.0 39.0 14 37.17964600626153 39.0 35.0 41.0 32.0 41.0 15 37.364211295382006 39.0 35.0 41.0 32.0 41.0 16 37.418519934860655 39.0 35.0 41.0 32.0 41.0 17 37.34226857969155 39.0 35.0 41.0 32.0 41.0 18 37.28033868203818 39.0 35.0 41.0 32.0 41.0 19 37.21581590683431 39.0 35.0 41.0 32.0 41.0 20 37.02871666055922 39.0 35.0 41.0 32.0 41.0 21 36.91883392355098 38.0 35.0 41.0 31.0 41.0 22 36.84853618928728 38.0 35.0 41.0 31.0 41.0 23 36.755950199721134 38.0 35.0 41.0 31.0 41.0 24 36.68678791850587 38.0 35.0 41.0 31.0 41.0 25 36.49494577042789 38.0 35.0 40.0 31.0 41.0 26 36.380225478851756 38.0 35.0 40.0 31.0 41.0 27 36.27519246062217 38.0 35.0 40.0 30.0 41.0 28 36.34017253412441 38.0 35.0 40.0 30.0 41.0 29 36.271659137527045 38.0 35.0 40.0 30.0 41.0 30 36.243698558693076 38.0 35.0 40.0 30.0 41.0 31 36.11659167937573 38.0 35.0 40.0 30.0 41.0 32 35.85120889447091 38.0 35.0 40.0 29.0 41.0 33 35.72619539979959 38.0 35.0 40.0 29.0 41.0 34 35.59393773748721 38.0 35.0 40.0 28.0 41.0 35 35.3951984819065 38.0 35.0 40.0 27.0 41.0 36 35.21507008866189 38.0 34.0 40.0 25.0 41.0 37 35.171580374262355 38.0 34.0 40.0 26.0 41.0 38 35.12253427646514 38.0 34.0 40.0 26.0 41.0 39 35.02096387685561 38.0 34.0 40.0 25.0 41.0 40 34.91223940079098 38.0 34.0 40.0 24.0 41.0 41 34.89117288840705 37.0 34.0 40.0 24.0 41.0 42 34.68887256012541 37.0 34.0 40.0 24.0 41.0 43 34.7098371972442 37.0 34.0 40.0 24.0 41.0 44 34.44006997462242 37.0 34.0 40.0 23.0 41.0 45 34.324892384747905 37.0 33.0 40.0 23.0 41.0 46 34.30810387323676 36.0 33.0 40.0 23.0 41.0 47 34.190612422396136 36.0 33.0 40.0 23.0 41.0 48 34.14794227169677 36.0 33.0 40.0 23.0 41.0 49 34.13953071995402 36.0 33.0 40.0 23.0 41.0 50 33.595493235938555 35.0 33.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 5.0 13 12.0 14 31.0 15 69.0 16 207.0 17 532.0 18 1220.0 19 2450.0 20 4260.0 21 6909.0 22 10193.0 23 14983.0 24 21530.0 25 30749.0 26 42958.0 27 51299.0 28 55067.0 29 59096.0 30 67489.0 31 81074.0 32 99223.0 33 125736.0 34 196895.0 35 305127.0 36 203536.0 37 253367.0 38 368017.0 39 628630.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.929912858635145 24.20480273451458 28.323338406822906 15.541946000027371 2 33.34415441249143 25.074239698814143 28.51195969996974 13.06964618872469 3 28.338999828180523 25.149163634483713 33.1586882115113 13.353148325824469 4 25.041320303436237 27.668599762493784 32.43761660536411 14.852463328705864 5 22.08876224593905 32.03254838694963 31.281864530225782 14.596824836885535 6 19.27544638852185 40.88353224352142 28.921893602689508 10.919127765267225 7 85.05938415641958 3.7755429419447837 8.958675134984727 2.2063977666509036 8 84.59303872628549 3.209831115138816 8.57690898281349 3.620221175762202 9 78.97819109062793 5.558854252988215 11.593215107341557 3.869739549042296 10 39.000360364743855 31.805191685153734 16.05485754948933 13.139590400613077 11 34.45767386838628 24.051115534153304 26.206917786661034 15.284292810799386 12 31.677923630043775 21.331578139088627 28.31721828828267 18.673279942584927 13 22.653979901682767 29.84234422587723 30.064835243367842 17.43884062907216 14 18.21491727576418 33.24258325261873 29.831814580935333 18.710684890681758 15 17.14420063649233 23.519957668546542 40.70540258215784 18.630439112803288 16 18.640246507731117 21.544907985348207 39.26516002779522 20.549685479125454 17 18.211610130962935 22.447834542405197 31.32767038638095 28.012884940250913 18 21.764015831720307 23.65422014484534 32.531699172985725 22.05006485044863 19 25.388532494408267 27.143105857523643 26.895716221127103 20.572645426940987 20 27.398934415137145 24.61051717662586 26.240825524163448 21.74972288407355 21 23.206463149283756 28.64295304462593 27.407335323195475 20.74324848289484 22 22.424646515637853 24.653662111676578 26.735680823273782 26.186010549411787 23 20.857249945641183 29.66349231449959 25.781816633645903 23.697441106213326 24 20.98216118491577 25.328547730082246 33.20913167301993 20.48015941198205 25 20.826763392415916 26.13955846955982 30.641532873019322 22.392145265004935 26 19.210862032000996 29.858461805138464 28.258754050302056 22.67192211255848 27 21.72208731774591 27.16321481844155 27.997451597845107 23.117246265967427 28 19.807098425190865 27.13257621258175 33.34191163613197 19.718413726095424 29 20.278195500154332 24.5350610567354 31.662642340272505 23.524101102837758 30 22.427535515694114 26.492054489582113 29.894004108462184 21.18640588626159 31 26.729294612623107 25.00174860529721 25.032235158522475 23.23672162355721 32 27.541901904763357 25.678154750048275 25.866433924767396 20.913509420420972 33 24.342182289821444 25.613494367210155 25.48827902266649 24.556044320301915 34 20.554285071320287 26.99169944668046 29.142750054358817 23.311265427640432 35 20.5247488470609 25.700848605753368 29.796576382880698 23.977826164305036 36 24.908160208737858 27.880257029773425 26.080486021041043 21.131096740447674 37 20.806198273594386 31.036527604395538 27.37772307261882 20.779551049391255 38 20.19851991965539 31.081801276329813 25.6511273942588 23.068551409756 39 20.773126825581944 30.647919083670004 25.188393214195028 23.390560876553028 40 22.836671142082544 26.573022517474648 27.235173727737592 23.355132612705216 41 19.420808707142065 26.008755190696814 27.621273379993216 26.94916272216791 42 22.726318942565157 26.957373564433063 25.04641406669333 25.26989342630845 43 22.158896523620616 26.058172296922304 27.075100316725635 24.70783086273144 44 22.114953312238566 28.054281270004427 27.73755563225766 22.093209785499347 45 19.919845453702255 29.287960320344492 26.96353169613193 23.828662529821322 46 23.756665607366646 28.281675984958955 26.015103388188855 21.946555019485544 47 22.47402560870471 25.824809516062082 27.70303968421709 23.998125191016122 48 22.976673605335225 24.306335881228648 28.2674970767881 24.44949343664803 49 22.116321785949424 24.39330998818551 28.206409930861664 25.2839582950034 50 20.463281569548116 26.54675542485787 29.248730740633178 23.74123226496084 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2844.0 1 3038.0 2 3232.0 3 18346.0 4 33460.0 5 23444.5 6 13429.0 7 13886.5 8 14344.0 9 15192.5 10 16041.0 11 16247.5 12 16454.0 13 16044.5 14 15635.0 15 15145.0 16 14655.0 17 14371.0 18 14087.0 19 13262.5 20 12438.0 21 11879.5 22 11321.0 23 11755.0 24 12189.0 25 13728.5 26 15268.0 27 16709.0 28 18150.0 29 22644.0 30 27138.0 31 30019.0 32 32900.0 33 40493.5 34 48087.0 35 53480.0 36 58873.0 37 65520.0 38 72167.0 39 90444.0 40 108721.0 41 135770.0 42 162819.0 43 194475.5 44 226132.0 45 248509.5 46 270887.0 47 263482.0 48 256077.0 49 234910.5 50 213744.0 51 193027.5 52 172311.0 53 158511.5 54 144712.0 55 135651.5 56 126591.0 57 119072.0 58 111553.0 59 104021.0 60 96489.0 61 87597.5 62 78706.0 63 70744.5 64 62783.0 65 52603.0 66 42423.0 67 37859.5 68 33296.0 69 29933.0 70 26570.0 71 22454.0 72 18338.0 73 15064.0 74 11790.0 75 9250.5 76 6711.0 77 5505.5 78 4300.0 79 3001.0 80 1702.0 81 1200.5 82 699.0 83 530.0 84 361.0 85 266.0 86 171.0 87 102.0 88 33.0 89 21.5 90 10.0 91 10.5 92 11.0 93 9.5 94 8.0 95 7.5 96 7.0 97 4.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2630668.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.57704657244162 #Duplication Level Percentage of deduplicated Percentage of total 1 78.48546718849754 20.074264495400403 2 7.632107502638448 3.9041353808172934 3 2.8524546001564652 2.188720924619317 4 1.506928277622823 1.541710989523527 5 0.9729350517149901 1.2442402564837596 6 0.7409170414807446 1.1370281805761198 7 0.5616804838947932 1.0056289526786069 8 0.4931338198840342 1.0090325342095985 9 0.40791190457033155 0.9389863602583858 >10 4.657616710403981 27.879388042260533 >50 1.3121429566686234 23.57129435811063 >100 0.3695211711672434 12.877655621906964 >500 0.004639208964585879 0.8498539441817989 >1k 0.002394430433334647 0.950674341829633 >5k 0.0 0.0 >10k+ 1.4965190208341545E-4 0.8273856171433485 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21616 0.8216924370540106 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3228 0.12270647607375768 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07712869887040098 0.0 2 0.0 0.0 0.0 0.2818295581198388 0.0 3 0.0 0.0 0.0 0.5035983255963884 0.0 4 0.0 0.0 0.0 0.7696524228827051 0.0 5 0.0 0.0 0.0 1.281081459157902 0.0 6 3.801315863499309E-5 0.0 0.0 2.3360986639135004 0.0 7 3.801315863499309E-5 0.0 0.0 3.009805874401483 0.0 8 3.801315863499309E-5 0.0 0.0 4.937339109306078 0.0 9 3.801315863499309E-5 0.0 0.0 6.05040240729731 0.0 10 3.801315863499309E-5 0.0 0.0 7.523260251768752 0.0 11 3.801315863499309E-5 0.0 0.0 8.262312081950288 0.0 12 3.801315863499309E-5 0.0 0.0 9.029569675838989 0.0 13 3.801315863499309E-5 0.0 0.0 9.439503578558753 0.0 14 3.801315863499309E-5 0.0 0.0 9.630291621747784 0.0 15 3.801315863499309E-5 0.0 0.0 9.797131374996768 0.0 16 3.801315863499309E-5 0.0 0.0 10.090326867548471 0.0 17 3.801315863499309E-5 0.0 0.0 10.39872762355417 0.0 18 3.801315863499309E-5 0.0 0.0 10.914946317817376 0.0 19 3.801315863499309E-5 0.0 0.0 11.113755137478389 0.0 20 3.801315863499309E-5 0.0 0.0 11.367226879256524 0.0 21 3.801315863499309E-5 0.0 0.0 11.605835476008375 0.0 22 3.801315863499309E-5 0.0 0.0 11.85413742821215 0.0 23 3.801315863499309E-5 0.0 0.0 12.143873723328067 0.0 24 3.801315863499309E-5 0.0 0.0 12.365186332900997 0.0 25 3.801315863499309E-5 0.0 0.0 12.551336770736558 0.0 26 3.801315863499309E-5 0.0 0.0 12.741668656021968 0.0 27 3.801315863499309E-5 0.0 0.0 12.94914447585176 0.0 28 3.801315863499309E-5 0.0 0.0 13.146584821801914 0.0 29 3.801315863499309E-5 0.0 0.0 13.356075339039363 0.0 30 3.801315863499309E-5 0.0 0.0 13.64953692370151 0.0 31 3.801315863499309E-5 0.0 0.0 13.880961033471346 0.0 32 3.801315863499309E-5 0.0 0.0 14.11303136693798 0.0 33 3.801315863499309E-5 0.0 0.0 14.327615647432514 0.0 34 3.801315863499309E-5 0.0 0.0 14.543454362162006 0.0 35 3.801315863499309E-5 0.0 0.0 14.79008373538584 0.0 36 3.801315863499309E-5 0.0 0.0 15.003679673755867 0.0 37 3.801315863499309E-5 0.0 0.0 15.231530546614016 0.0 38 3.801315863499309E-5 0.0 0.0 15.466299814343733 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTA 25 4.444409E-5 44.0 27 CACGACG 540 0.0 42.37037 26 CGTTTTT 15075 0.0 42.117413 1 CGGTCTA 540 0.0 41.962963 31 CGACGGT 550 0.0 40.8 28 TCACGAC 565 0.0 40.495575 25 TAGGGCG 1215 0.0 39.47325 5 ACGGGTA 240 0.0 39.416664 5 ACGGTCT 570 0.0 39.368423 30 TAGGGTA 1430 0.0 38.76923 5 CTCACGA 585 0.0 38.735043 24 AATAGCG 160 0.0 38.5 1 TAAGGGA 2970 0.0 38.37037 4 AAATGCG 195 0.0 38.358974 1 GCGTAAG 155 0.0 38.322582 1 TGCGTAG 150 0.0 38.13333 1 GACGGTC 590 0.0 38.033897 29 ATAACGC 285 0.0 37.824562 11 GTTTTTT 17330 0.0 37.728794 2 TATCGTG 35 7.293789E-6 37.714287 1 >>END_MODULE