##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547246_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 685104 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.462332726126252 31.0 31.0 33.0 30.0 34.0 2 31.85173054018076 31.0 31.0 34.0 30.0 34.0 3 31.98183633433756 33.0 31.0 34.0 30.0 34.0 4 35.642587110862 37.0 35.0 37.0 33.0 37.0 5 35.52920870407996 37.0 35.0 37.0 33.0 37.0 6 35.56630088278568 37.0 35.0 37.0 33.0 37.0 7 36.027627922184074 37.0 35.0 37.0 35.0 37.0 8 36.02602086690488 37.0 35.0 37.0 35.0 37.0 9 37.75162749013288 39.0 38.0 39.0 35.0 39.0 10 37.123150645741376 39.0 37.0 39.0 33.0 39.0 11 36.91945748382727 39.0 37.0 39.0 33.0 39.0 12 36.31149577290455 38.0 35.0 39.0 32.0 39.0 13 36.049909210864335 38.0 35.0 39.0 32.0 39.0 14 37.10582188981527 39.0 35.0 41.0 32.0 41.0 15 37.32689197552489 39.0 35.0 41.0 32.0 41.0 16 37.41089382050024 39.0 35.0 41.0 33.0 41.0 17 37.34726114575305 39.0 35.0 41.0 32.0 41.0 18 37.322377332492586 39.0 35.0 41.0 32.0 41.0 19 37.28694037693547 39.0 35.0 41.0 32.0 41.0 20 37.12971315303954 39.0 35.0 41.0 32.0 41.0 21 37.01037068824587 39.0 35.0 41.0 32.0 41.0 22 36.93476026997361 38.0 35.0 41.0 32.0 41.0 23 36.868536747705456 38.0 35.0 41.0 32.0 41.0 24 36.78849780471286 38.0 35.0 41.0 32.0 41.0 25 36.635103575515544 38.0 35.0 41.0 31.0 41.0 26 36.52031078493192 38.0 35.0 40.0 31.0 41.0 27 36.4303857516523 38.0 35.0 40.0 31.0 41.0 28 36.526981305028144 38.0 35.0 40.0 31.0 41.0 29 36.47267130245919 38.0 35.0 40.0 31.0 41.0 30 36.468433989584064 38.0 35.0 40.0 31.0 41.0 31 36.36108094537472 38.0 35.0 40.0 31.0 41.0 32 36.18745475139541 38.0 35.0 40.0 30.0 41.0 33 36.130956759849596 38.0 35.0 40.0 30.0 41.0 34 36.06446028632149 38.0 35.0 40.0 30.0 41.0 35 35.89134058478713 38.0 35.0 40.0 30.0 41.0 36 35.75422271655106 38.0 35.0 40.0 29.0 41.0 37 35.70698755225484 38.0 35.0 40.0 29.0 41.0 38 35.65948089633107 38.0 35.0 40.0 29.0 41.0 39 35.58407044769845 38.0 35.0 40.0 29.0 41.0 40 35.46402444008501 37.0 35.0 40.0 29.0 41.0 41 35.458793117541276 37.0 35.0 40.0 29.0 41.0 42 35.25679166958593 37.0 34.0 40.0 28.0 41.0 43 35.273076788341626 37.0 34.0 40.0 28.0 41.0 44 34.94032146944114 37.0 34.0 40.0 27.0 41.0 45 34.865980931362245 36.0 34.0 40.0 27.0 41.0 46 34.89652082019664 36.0 34.0 40.0 27.0 41.0 47 34.79527779723954 36.0 34.0 40.0 27.0 41.0 48 34.77648940890726 36.0 34.0 40.0 27.0 41.0 49 34.76193541418529 36.0 34.0 40.0 27.0 41.0 50 34.240239438099906 35.0 33.0 39.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 8.0 15 12.0 16 43.0 17 79.0 18 203.0 19 434.0 20 774.0 21 1315.0 22 1887.0 23 2984.0 24 4257.0 25 6087.0 26 8436.0 27 10414.0 28 11790.0 29 13398.0 30 15835.0 31 19570.0 32 24494.0 33 32846.0 34 54804.0 35 93631.0 36 52413.0 37 64367.0 38 94910.0 39 170111.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.069431794296925 24.46124967888087 28.525012260912213 13.944306265909992 2 32.26342277960718 24.975186249095028 29.305331745253277 13.45605922604451 3 29.084927251920877 25.765285270557463 31.439606249562107 13.71018122795955 4 26.34534318877134 28.1717812186179 30.584699549265515 14.898176043345243 5 23.16947499941615 32.54411009131461 29.251617272706042 15.034797636563207 6 19.851584576940144 41.422470165113616 27.347672762091594 11.378272495854644 7 87.398117658049 4.049896074172681 6.603668932016162 1.9483173357621615 8 87.34206777365189 3.403862771199701 6.10038767836708 3.1536817767813354 9 82.12227632593007 5.263872346388285 9.002574791564493 3.6112765361171446 10 43.95580816927065 27.253380508652704 14.481596954622947 14.309214367453702 11 39.49882061701581 23.58503234545412 21.667513253462246 15.248633784067819 12 35.73778579602513 20.89390807818959 25.50386510661155 17.864441019173732 13 23.48242018730003 32.67810434620145 26.675803965529322 17.163671500969198 14 18.225700039702 36.08371867628856 27.083333333333332 18.6072479506761 15 16.78956771526659 22.875359069571918 42.272122188747986 18.062951026413508 16 18.558934118031715 20.001050935332447 40.96852448679324 20.47149045984259 17 18.391806207524695 21.084244143954788 28.613757911207642 31.910191737312875 18 22.129049020294726 23.32930474789229 31.71372521544174 22.827921016371235 19 27.54530698988767 26.15559097596861 24.828201265793222 21.470900768350496 20 29.873858567458374 23.792738036852796 23.72544898292814 22.60795441276069 21 24.64034657511852 28.02859127957215 25.543275181578274 21.787786963731055 22 23.857253789205725 24.872428127700317 24.40797309605549 26.862344987038465 23 21.677146827343 29.98420677736519 23.733330997921485 24.605315397370326 24 21.47148462131297 25.386802587636332 32.22970527102454 20.912007520026158 25 21.84354492164693 24.539777902333075 30.46530161844041 23.151375557579577 26 19.307141689436932 30.800579182138772 26.294693944277075 23.597585184147224 27 21.365661271865292 28.43276349284196 27.566325696536587 22.63524953875616 28 19.24642098134006 27.356722483009875 33.87120787500876 19.525648660641302 29 19.762692963404096 25.082615194189493 32.10928559751512 23.045406244891286 30 21.944405520913612 26.783378873864404 29.88553562670777 21.386679978514213 31 27.633906676942477 25.288423363460144 23.833461780985076 23.2442081786123 32 27.85577080268105 26.12274924682968 25.8382668908662 20.183213059623064 33 25.651725869357062 26.709667437352575 25.0275870524767 22.611019640813655 34 20.568701978093838 26.727474952707908 28.915755856045212 23.788067213153038 35 22.27968308461197 24.658591980195705 29.247530301968755 23.81419463322357 36 27.890510053948013 24.67873490740092 25.419644316775265 22.011110721875802 37 22.39864312571522 28.769500688946497 27.318626077208712 21.51323010812957 38 21.908936453443566 29.305477708493893 24.45541114925617 24.330174688806373 39 21.607522361568464 28.45611761134076 25.556849762955697 24.379510264135078 40 23.432792685490085 24.710262967374298 26.562244564328918 25.294699782806696 41 18.761968985730633 24.26887012774703 28.024796235316096 28.94436465120624 42 23.094449893738762 27.014000794040026 24.413081809477102 25.478467502744106 43 22.906741166304677 26.619900044372823 26.012838926644715 24.46051986267778 44 22.513954085803032 28.681484854854155 27.282719120016814 21.521841939326 45 20.568993904575073 29.699578458161096 25.213690184263992 24.517737452999835 46 23.706035871926016 27.91109087087508 26.18522151381396 22.197651743384945 47 23.284056143300873 25.85709614890586 26.816950419206425 24.041897288586842 48 23.518181181251315 24.134875872860178 27.676965832924637 24.66997711296387 49 21.953017352110045 23.92833788738644 28.734615474438918 25.384029286064596 50 20.34333473458044 27.311473878418457 28.1592283799248 24.185963007076296 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 799.0 1 838.0 2 877.0 3 3386.0 4 5895.0 5 4143.5 6 2392.0 7 2502.5 8 2613.0 9 2819.5 10 3026.0 11 3016.0 12 3006.0 13 2900.0 14 2794.0 15 2693.0 16 2592.0 17 2425.5 18 2259.0 19 2310.5 20 2362.0 21 2364.0 22 2366.0 23 2393.5 24 2421.0 25 2860.5 26 3300.0 27 3992.0 28 4684.0 29 5338.0 30 5992.0 31 6900.5 32 7809.0 33 9560.0 34 11311.0 35 12907.0 36 14503.0 37 15832.0 38 17161.0 39 21505.5 40 25850.0 41 34465.0 42 43080.0 43 51375.5 44 59671.0 45 64131.0 46 68591.0 47 65567.0 48 62543.0 49 58902.0 50 55261.0 51 51410.5 52 47560.0 53 44087.0 54 40614.0 55 38184.5 56 35755.0 57 34210.5 58 32666.0 59 31757.0 60 30848.0 61 28140.0 62 25432.0 63 22489.0 64 19546.0 65 16147.0 66 12748.0 67 10879.5 68 9011.0 69 7929.5 70 6848.0 71 5529.5 72 4211.0 73 3597.0 74 2983.0 75 2411.0 76 1839.0 77 1404.0 78 969.0 79 767.5 80 566.0 81 401.0 82 236.0 83 160.0 84 84.0 85 49.5 86 15.0 87 13.0 88 11.0 89 6.5 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 685104.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.51258495014093 #Duplication Level Percentage of deduplicated Percentage of total 1 74.53577654076587 21.252076604433082 2 6.559676734685234 3.740666802863516 3 2.8860084292571435 2.4686268151805124 4 1.8348264726230037 2.0926258267772333 5 1.356268488785651 1.9335360250850069 6 1.1361197183856935 1.9436225990401366 7 0.9035482388708536 1.8033747142148806 8 0.7743940204438898 1.7663980234230066 9 0.7074856769880749 1.8155020919517404 >10 9.042710103297635 54.46585808253248 >50 0.22507259621723047 4.022403776272849 >100 0.0355377783500454 1.764858843532463 >500 0.0020601610637707483 0.4091277032851923 >1k 5.150402659426871E-4 0.5213220914079084 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3550 0.5181695041920642 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 896 0.13078306359326466 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 720 0.10509353324458769 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.057801443284523225 0.0 2 0.0 0.0 0.0 0.2406933837782293 0.0 3 0.0 0.0 0.0 0.4213958756626731 0.0 4 0.0 0.0 0.0 0.6191760666993624 0.0 5 0.0 0.0 0.0 0.956059226044513 0.0 6 0.0 0.0 0.0 1.7013475326373806 0.0 7 0.0 0.0 0.0 2.1417186295803265 0.0 8 0.0 0.0 0.0 3.5854410425278496 0.0 9 0.0 0.0 0.0 4.412176837385273 0.0 10 0.0 0.0 0.0 5.5020843550760175 0.0 11 0.0 0.0 0.0 6.096446670870408 0.0 12 0.0 0.0 0.0 6.663367897428712 0.0 13 0.0 0.0 0.0 6.951207407926388 0.0 14 0.0 0.0 0.0 7.084909736332002 0.0 15 0.0 0.0 0.0 7.204891520119573 0.0 16 0.0 0.0 0.0 7.4251500502113545 0.0 17 0.0 0.0 0.0 7.659567014643033 0.0 18 0.0 0.0 0.0 8.072642985590509 0.0 19 0.0 0.0 0.0 8.226488241201336 0.0 20 0.0 0.0 0.0 8.426603844087905 0.0 21 0.0 0.0 0.0 8.614458534762605 0.0 22 0.0 0.0 0.0 8.791949835353465 0.0 23 0.0 0.0 0.0 9.015565519979448 0.0 24 0.0 0.0 0.0 9.175103341974356 0.0 25 0.0 0.0 0.0 9.30895163362059 0.0 26 0.0 0.0 0.0 9.441340292860646 0.0 27 0.0 0.0 0.0 9.602191784021112 0.0 28 1.459632406174829E-4 0.0 0.0 9.745819612788715 0.0 29 1.459632406174829E-4 0.0 0.0 9.904773581821154 0.0 30 1.459632406174829E-4 0.0 0.0 10.128681192928372 0.0 31 1.459632406174829E-4 0.0 0.0 10.294641397510452 0.0 32 1.459632406174829E-4 0.0 0.0 10.463082977183026 0.0 33 1.459632406174829E-4 0.0 0.0 10.615176673906443 0.0 34 1.459632406174829E-4 0.0 0.0 10.766832480908008 0.0 35 1.459632406174829E-4 0.0 0.0 10.947826899273688 0.0 36 1.459632406174829E-4 0.0 0.0 11.106342978584273 0.0 37 1.459632406174829E-4 0.0 0.0 11.262815572526215 0.0 38 1.459632406174829E-4 0.0 0.0 11.427316144702118 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 130 0.0 44.000004 28 TCACGCC 20 7.854253E-4 44.0 34 TACCCGA 20 7.854253E-4 44.0 40 CAACCCG 20 7.854253E-4 44.0 23 ATTAACG 20 7.854253E-4 44.0 1 TGACGTA 20 7.854253E-4 44.0 10 TTATACG 20 7.854253E-4 44.0 1 CTCACGA 140 0.0 42.428574 24 GACGGTC 135 0.0 42.370373 29 CGTTTTT 2245 0.0 41.942093 1 GCGTTAG 80 0.0 41.25 1 AATACGG 65 0.0 40.615387 2 ACGGGTA 55 7.8216544E-11 40.0 5 TCACGAC 150 0.0 39.6 25 CAGCGAT 100 0.0 39.6 21 GTATGCG 50 1.3460522E-9 39.6 1 GCGTAAG 50 1.3460522E-9 39.6 1 CGGTCTA 145 0.0 39.448273 31 TAGGGTA 320 0.0 39.1875 5 TGTAGCG 45 2.3484972E-8 39.11111 1 >>END_MODULE