##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547245_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1604109 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.392559358497458 31.0 31.0 33.0 30.0 34.0 2 31.76828818989233 31.0 31.0 34.0 30.0 34.0 3 31.886345005233434 31.0 31.0 34.0 30.0 34.0 4 35.576095514706296 37.0 35.0 37.0 33.0 37.0 5 35.45330149011071 37.0 35.0 37.0 33.0 37.0 6 35.492155458263746 37.0 35.0 37.0 33.0 37.0 7 35.99473352496619 37.0 35.0 37.0 35.0 37.0 8 35.997121766662985 37.0 35.0 37.0 35.0 37.0 9 37.718677471418715 39.0 37.0 39.0 35.0 39.0 10 37.0887290078168 39.0 37.0 39.0 33.0 39.0 11 36.8156983097782 39.0 37.0 39.0 32.0 39.0 12 36.26371898667734 38.0 35.0 39.0 32.0 39.0 13 36.012372600615045 38.0 35.0 39.0 31.0 39.0 14 37.08171639209056 39.0 35.0 41.0 32.0 41.0 15 37.31133046445098 39.0 35.0 41.0 32.0 41.0 16 37.39080573701663 39.0 35.0 41.0 32.0 41.0 17 37.32765229794234 39.0 35.0 41.0 32.0 41.0 18 37.27338977588181 39.0 35.0 41.0 32.0 41.0 19 37.20999071758839 38.0 35.0 41.0 32.0 41.0 20 37.03653741734508 38.0 35.0 41.0 32.0 41.0 21 36.90819638815068 38.0 35.0 41.0 32.0 41.0 22 36.82807340398938 38.0 35.0 41.0 32.0 41.0 23 36.745701196115725 38.0 35.0 41.0 32.0 41.0 24 36.67707431352857 38.0 35.0 41.0 31.0 41.0 25 36.52433905675986 38.0 35.0 40.0 31.0 41.0 26 36.403463230989914 38.0 35.0 40.0 31.0 41.0 27 36.30592185443757 38.0 35.0 40.0 31.0 41.0 28 36.372705969482126 38.0 35.0 40.0 31.0 41.0 29 36.31618861311794 38.0 35.0 40.0 31.0 41.0 30 36.30088354344998 38.0 35.0 40.0 31.0 41.0 31 36.15641331106552 38.0 35.0 40.0 31.0 41.0 32 35.90220178304592 38.0 35.0 40.0 30.0 41.0 33 35.77391000237515 38.0 35.0 40.0 30.0 41.0 34 35.62023528326317 38.0 35.0 40.0 29.0 41.0 35 35.42840667311261 38.0 35.0 40.0 28.0 41.0 36 35.234871196408726 38.0 34.0 40.0 27.0 41.0 37 35.19095460470579 38.0 34.0 40.0 27.0 41.0 38 35.14256013774625 37.0 34.0 40.0 27.0 41.0 39 35.079451583402374 37.0 34.0 40.0 26.0 41.0 40 34.9637106954702 37.0 34.0 40.0 26.0 41.0 41 34.97375614749372 37.0 34.0 40.0 26.0 41.0 42 34.78450591574513 37.0 34.0 40.0 25.0 41.0 43 34.77559941375555 37.0 34.0 40.0 26.0 41.0 44 34.448642205735396 36.0 34.0 40.0 24.0 41.0 45 34.39886129932567 36.0 34.0 40.0 24.0 41.0 46 34.40390522090456 36.0 34.0 40.0 24.0 41.0 47 34.32190954604706 36.0 33.0 40.0 24.0 41.0 48 34.290483377376475 36.0 34.0 40.0 24.0 41.0 49 34.300153543181914 36.0 34.0 40.0 24.0 41.0 50 33.74005133067641 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 2.0 13 4.0 14 9.0 15 49.0 16 91.0 17 269.0 18 556.0 19 1154.0 20 2170.0 21 3487.0 22 5606.0 23 8305.0 24 11947.0 25 17576.0 26 24065.0 27 28541.0 28 31160.0 29 33731.0 30 39161.0 31 48027.0 32 60472.0 33 78362.0 34 130299.0 35 212802.0 36 125702.0 37 152930.0 38 216543.0 39 371085.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.56274978820018 23.84357920814608 28.768119872153324 14.825551131500417 2 31.76261712888588 26.034203411364192 28.995785199135472 13.20739426061446 3 27.582227890997434 25.91257825995615 33.114582612528196 13.390611236518216 4 24.74582462912433 28.18630155432081 32.33614423957474 14.731729576980118 5 22.162272015181014 32.184845294178885 31.70414229955695 13.94874039108315 6 19.351677473288913 41.66181973918231 28.074089728316466 10.91241305921231 7 85.02907221392061 4.069112510434141 8.716552304113998 2.185262971531236 8 85.05400817525492 3.2715981270599443 7.950083192601001 3.724310505084131 9 79.33768839898036 5.38666636743513 11.284145902803363 3.9914993307811377 10 44.07692993431244 27.74805203387052 15.291230209418439 12.8837878223986 11 37.32134162952767 22.889716347205834 25.313304769189628 14.475637254076872 12 33.747893690516044 20.934425279080163 27.007516322145193 18.310164708258604 13 22.08141716055455 31.959798243136845 29.227377940027765 16.73140665628084 14 17.214166867712855 34.96564136227651 29.532344747146233 18.287847022864405 15 15.930027198899827 22.444983476808623 43.82856775942283 17.796421564868723 16 17.249014873677538 20.641552413208828 41.61219717612706 20.497235536986576 17 17.636644392619203 21.80550074839054 30.589442488010476 29.96841237097978 18 21.47578499964778 23.324474833069324 33.2584631094271 21.941277057855793 19 25.981837892562165 27.56146870318663 26.07640752592249 20.380285878328717 20 27.87503841696543 24.4710926751237 25.55973440707583 22.094134500835043 21 22.206782706162738 29.587577901501703 27.32376665176743 20.881872740568127 22 22.042267701259703 25.132893088935976 26.126466468301096 26.698372741503228 23 20.130489885662385 29.869790643902626 25.70760465778822 24.292114812646773 24 20.491375586073016 24.99013471029712 33.83504487537942 20.68344482825045 25 19.787682757219116 26.057643215018434 31.576844216945354 22.577829810817097 26 18.112796574297633 30.652966849509607 28.51103011079671 22.723206465396053 27 20.613437116804405 28.354930992844 28.728409353728455 22.303222536623135 28 19.205178700449906 27.7785362466017 34.278343927999906 18.73794112494849 29 19.716303567899686 24.511862971905277 33.04407618185547 22.727757278339563 30 21.297929255430898 27.96929635080908 30.194269840765187 20.53850455299484 31 26.75547609295877 26.187684253376798 23.832046326028966 23.224793327635464 32 27.06044290007724 27.19684260857585 25.636163128565453 20.10655136278146 33 25.184822228414657 27.959010266758682 24.92891692522142 21.92725057960525 34 19.38596442012357 28.830272755779063 28.93949226642329 22.844270557674072 35 21.768907225132455 26.441033620533265 28.401935279959154 23.38812387437512 36 26.100969447836775 25.91918628970974 27.17265472608158 20.807189536371908 37 21.961163487019896 28.49170474076263 27.837322775447305 21.709808996770168 38 20.739488401349284 29.040108870407185 25.977037720005313 24.243365008238218 39 20.824956408822594 27.22115517087679 27.462036557366115 24.491851862934503 40 23.219993155078615 24.030723597959987 28.180192243793904 24.56909100316749 41 18.85501546341302 23.08671044174679 28.968605001281084 29.089669093559106 42 22.774013486614688 25.884213603938385 25.410991397716735 25.93078151173019 43 22.026371025909086 25.768697763057247 27.512095499744717 24.692835711288946 44 22.21039842055621 28.400626141989104 27.751979447780666 21.63699598967402 45 19.93125155460134 29.886809437513286 26.309247064881504 23.872691943003872 46 23.27510162962741 28.333174366579826 26.798303606550427 21.593420397242333 47 22.4909903254704 25.296847034708986 27.551930697976264 24.66023194184435 48 23.11370361989117 23.41524173232617 28.49139304124595 24.979661606536713 49 22.086653712434753 22.577954490623767 29.26584166038592 26.06955013655556 50 20.66237394092297 26.331315390662358 29.012429953326112 23.993880715088565 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2549.0 1 2234.5 2 1920.0 3 10754.0 4 19588.0 5 13757.0 6 7926.0 7 8147.5 8 8369.0 9 8992.5 10 9616.0 11 9860.5 12 10105.0 13 9849.0 14 9593.0 15 9151.5 16 8710.0 17 8357.5 18 8005.0 19 7656.5 20 7308.0 21 7037.0 22 6766.0 23 6956.0 24 7146.0 25 7879.0 26 8612.0 27 9493.0 28 10374.0 29 11949.0 30 13524.0 31 16612.5 32 19701.0 33 23141.0 34 26581.0 35 29370.0 36 32159.0 37 34645.0 38 37131.0 39 48996.0 40 60861.0 41 84330.5 42 107800.0 43 130542.5 44 153285.0 45 167783.5 46 182282.0 47 173234.0 48 164186.0 49 147443.0 50 130700.0 51 115829.5 52 100959.0 53 92015.5 54 83072.0 55 77530.0 56 71988.0 57 67306.5 58 62625.0 59 60571.5 60 58518.0 61 53773.5 62 49029.0 63 43563.5 64 38098.0 65 32393.5 66 26689.0 67 21789.0 68 16889.0 69 15570.5 70 14252.0 71 12774.0 72 11296.0 73 8978.5 74 6661.0 75 5333.0 76 4005.0 77 3366.5 78 2728.0 79 2044.5 80 1361.0 81 1035.5 82 710.0 83 483.5 84 257.0 85 194.0 86 131.0 87 76.0 88 21.0 89 15.0 90 9.0 91 9.0 92 9.0 93 6.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1604109.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.318019248211538 #Duplication Level Percentage of deduplicated Percentage of total 1 77.49717591531966 21.170693433367383 2 7.711124093739068 4.213052728362232 3 2.85997551469767 2.34386598479774 4 1.6321841338947491 1.7835215034544893 5 1.1236811091115855 1.534837108378099 6 0.8290548867793068 1.3588882412916568 7 0.6532261982383081 1.2491392099837102 8 0.5272262805880644 1.1522222145014176 9 0.46387581397431055 1.140495157343701 >10 5.389952387119503 34.00550577277588 >50 1.1339895106154587 21.37482674515433 >100 0.1734856325457785 6.611614313348359 >500 0.003442175029518909 0.6871334253922968 >1k 0.001376870011807564 0.5711588941473603 >5k 0.0 0.0 >10k+ 2.294783353012606E-4 0.8030452677014253 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12810 0.7985741617309049 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2253 0.1404518022154355 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2170 0.13527759023856858 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07954571665641175 0.0 2 0.0 0.0 0.0 0.31057739841868603 0.0 3 0.0 0.0 0.0 0.5535783416214235 0.0 4 0.0 0.0 0.0 0.8612881044866652 0.0 5 0.0 0.0 0.0 1.4202900176982987 0.0 6 0.0 0.0 0.0 2.645580817762384 0.0 7 0.0 0.0 0.0 3.406564017781834 0.0 8 0.0 0.0 0.0 5.627236054407774 0.0 9 0.0 0.0 0.0 6.947158827735522 0.0 10 0.0 0.0 0.0 8.690057845196305 0.0 11 0.0 0.0 0.0 9.500725948174345 0.0 12 0.0 0.0 0.0 10.341130185043536 0.0 13 0.0 0.0 0.0 10.83093480555249 0.0 14 0.0 0.0 0.0 11.061654787798085 0.0 15 0.0 0.0 0.0 11.23745331520489 0.0 16 0.0 0.0 0.0 11.550087930433655 0.0 17 0.0 0.0 0.0 11.862036806725728 0.0 18 0.0 0.0 0.0 12.42558953288087 0.0 19 0.0 0.0 0.0 12.645337692139375 0.0 20 0.0 0.0 0.0 12.916453931746533 0.0 21 0.0 0.0 0.0 13.173543693103149 0.0 22 0.0 0.0 0.0 13.425334562676227 0.0 23 0.0 0.0 0.0 13.721386763617684 0.0 24 0.0 0.0 0.0 13.954101622770024 0.0 25 0.0 0.0 0.0 14.145048746687413 0.0 26 0.0 0.0 0.0 14.333938653794723 0.0 27 0.0 0.0 0.0 14.5546842515066 0.0 28 0.0 0.0 0.0 14.763148888261334 0.0 29 0.0 0.0 0.0 14.968122490429266 0.0 30 0.0 0.0 0.0 15.262990233207345 0.0 31 0.0 0.0 0.0 15.485294328502615 0.0 32 0.0 0.0 0.0 15.700366995010938 0.0 33 0.0 0.0 0.0 15.92366852875958 0.0 34 0.0 0.0 0.0 16.13556186019778 0.0 35 0.0 0.0 0.0 16.375757507750407 0.0 36 0.0 0.0 0.0 16.594757588168882 0.0 37 0.0 0.0 0.0 16.825913949737828 0.0 38 0.0 0.0 0.0 17.04809336522643 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCAATC 30 2.5283462E-6 44.000004 20 CGAACCG 20 7.857414E-4 44.0 34 GACCGTT 25 4.4436307E-5 44.0 10 CAATCGA 20 7.857414E-4 44.0 28 TACGTAG 115 0.0 42.086952 1 CGTTTTT 8160 0.0 42.03186 1 CGGTCTA 545 0.0 41.98165 31 CACGACG 540 0.0 41.555553 26 TCGATAG 70 0.0 40.857143 1 TCACGAC 565 0.0 40.495575 25 CGACGGT 560 0.0 40.464287 28 CAACCCG 165 0.0 40.0 23 CTCACGT 105 0.0 39.809525 44 ACGTAAG 105 0.0 39.809525 1 GCGTAAG 135 0.0 39.11111 1 CTCACGA 595 0.0 38.45378 24 TAGCATA 665 0.0 38.37594 30 TACGGGA 645 0.0 38.20155 4 GGTACCT 730 0.0 37.972603 8 TCTCACG 605 0.0 37.81818 23 >>END_MODULE