##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547242_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3744325 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.246572880292174 31.0 31.0 33.0 30.0 34.0 2 31.63432794963044 31.0 31.0 34.0 30.0 34.0 3 31.699037343179345 31.0 31.0 34.0 30.0 34.0 4 35.42656446756091 37.0 35.0 37.0 33.0 37.0 5 35.314288156076195 37.0 35.0 37.0 33.0 37.0 6 35.349137427974334 37.0 35.0 37.0 33.0 37.0 7 35.93663103496625 37.0 35.0 37.0 35.0 37.0 8 35.927580538548334 37.0 35.0 37.0 35.0 37.0 9 37.61867172320779 39.0 37.0 39.0 35.0 39.0 10 36.90179217883063 39.0 37.0 39.0 32.0 39.0 11 36.707571858746235 39.0 35.0 39.0 32.0 39.0 12 36.50363309808844 39.0 35.0 39.0 32.0 39.0 13 36.435587989824604 39.0 35.0 39.0 32.0 39.0 14 37.54309975763322 40.0 36.0 41.0 32.0 41.0 15 37.667845873421776 40.0 36.0 41.0 32.0 41.0 16 37.68457145146321 40.0 36.0 41.0 32.0 41.0 17 37.620227677885865 40.0 36.0 41.0 32.0 41.0 18 37.438947206772916 39.0 36.0 41.0 32.0 41.0 19 37.29239742810787 38.0 36.0 41.0 32.0 41.0 20 37.00060678493453 38.0 35.0 41.0 32.0 41.0 21 36.90230174998164 38.0 35.0 41.0 32.0 41.0 22 36.83281285678994 38.0 35.0 40.0 31.0 41.0 23 36.70942693275824 38.0 35.0 40.0 31.0 41.0 24 36.6670155501993 38.0 35.0 40.0 31.0 41.0 25 36.4921776288116 38.0 35.0 40.0 31.0 41.0 26 36.40387626608267 38.0 35.0 40.0 31.0 41.0 27 36.27129776394944 38.0 35.0 40.0 30.0 41.0 28 36.312069598659306 38.0 35.0 40.0 31.0 41.0 29 36.21358268846855 38.0 35.0 40.0 30.0 41.0 30 36.12927670541419 38.0 35.0 40.0 30.0 41.0 31 35.89269174016678 38.0 35.0 40.0 30.0 41.0 32 35.43121871098262 38.0 34.0 40.0 26.0 41.0 33 35.09839076469056 38.0 34.0 40.0 24.0 41.0 34 34.7718376476401 38.0 34.0 40.0 22.0 41.0 35 34.42437956106908 38.0 34.0 40.0 19.0 41.0 36 34.247528726806564 38.0 34.0 40.0 18.0 41.0 37 34.19337584210772 38.0 33.0 40.0 18.0 41.0 38 34.14700246372844 38.0 33.0 40.0 18.0 41.0 39 34.01599487223999 38.0 33.0 40.0 17.0 41.0 40 33.95387927062955 38.0 33.0 40.0 16.0 41.0 41 33.94357968392167 38.0 33.0 40.0 15.0 41.0 42 33.73446909656614 38.0 33.0 40.0 15.0 41.0 43 33.75089608941531 38.0 33.0 40.0 15.0 41.0 44 33.49360111635608 38.0 33.0 40.0 15.0 41.0 45 33.408333144158156 37.0 33.0 40.0 15.0 41.0 46 33.40220734044187 37.0 33.0 40.0 14.0 41.0 47 33.30361867626341 37.0 33.0 40.0 13.0 41.0 48 33.2468546400219 37.0 33.0 40.0 13.0 41.0 49 33.23228058461805 37.0 32.0 40.0 12.0 41.0 50 32.671915231717335 36.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 4.0 12 5.0 13 17.0 14 28.0 15 121.0 16 307.0 17 932.0 18 2197.0 19 4562.0 20 7901.0 21 12745.0 22 19446.0 23 28062.0 24 41843.0 25 64805.0 26 95140.0 27 107488.0 28 101259.0 29 93814.0 30 98595.0 31 112559.0 32 135977.0 33 167805.0 34 239386.0 35 344725.0 36 278903.0 37 339546.0 38 505276.0 39 940874.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.311558158012456 23.36151375748633 27.483431593144292 19.84349649135692 2 36.443738190461566 24.328897731900945 26.808623717225398 12.418740360412091 3 25.076428995880434 23.837433983428255 38.59360498888318 12.492532031808135 4 21.814799730258457 26.431973720229944 38.181621520567795 13.5716050289438 5 20.349996327776037 30.17147282888104 36.97852082818665 12.50001001515627 6 17.056505511674334 38.71741902746156 33.86970949370047 10.356365967163642 7 79.19443424382231 3.244216247254178 15.340201504944147 2.2211480039793554 8 78.36274896009294 2.9034605703297656 14.694397521582662 4.039392947994632 9 71.89175619103577 5.655785755777076 18.27982346617882 4.172634587008339 10 31.51366401153746 30.71691159287722 24.388775012852783 13.380649382732535 11 25.630200369893103 25.241051457872913 34.65612627109025 14.47262190114373 12 23.125182776601925 21.55998744767081 37.180586621086576 18.13424315464069 13 19.431112416790743 26.882442095704835 39.06084541272459 14.625600074779834 14 16.290225875157738 30.520000267070834 36.028843650057084 17.160930207714344 15 15.303425851121363 24.543515853992375 45.03097353995714 15.122084754929126 16 16.134283215265768 24.254838989671036 42.21033163520795 17.40054615985525 17 16.968639207333766 25.031454267458088 36.20978413999853 21.790122385209617 18 19.09858252154928 24.260260527598433 38.82536905850854 17.815787892343746 19 21.090717285492044 28.20265334873442 33.88616105706636 16.820468308707177 20 21.769370981418547 25.629212207807818 33.565569228098525 19.035847582675114 21 19.661060404745847 29.027207841199683 34.113144558765605 17.19858719528887 22 18.69434410741589 25.214985344487996 33.48272385543456 22.607946692661564 23 16.55548062734939 29.465844978734484 33.23549638452859 20.743178009387538 24 16.93747204102208 25.74592216220547 38.05967697782645 19.256928818946005 25 16.820949036208127 27.625913883009623 36.15351231530383 19.399624765478425 26 16.77194153819447 29.095337610917856 35.44451937265061 18.688201478237065 27 19.01974321139324 27.484232805645874 33.70089401961635 19.79512996334453 28 17.843509844898612 27.29469263485408 37.49565008379348 17.366147436453833 29 18.10499889833281 25.398623249851443 35.30556241779226 21.190815434023488 30 19.591728816275296 27.833374506753554 33.128561222650276 19.446335454320874 31 21.71779960339981 25.903173469183365 30.881427226536157 21.497599700880667 32 21.540758347632753 27.42467600969467 30.44353788733617 20.59102775533641 33 21.431766740333703 27.253109706021778 29.565702763515457 21.74942079012906 34 18.48026012699218 28.197258517890404 30.172193920132468 23.150287434984946 35 18.998030352600267 26.503815774538804 29.811888658169362 24.686265214691566 36 20.690565055116743 27.988729610811024 29.57387513103163 21.746830203040602 37 18.79473603386458 28.214724950424973 30.46848230321887 22.52205671249157 38 18.10232818999419 29.31324070426579 31.21294225260895 21.37148885313107 39 18.029230902766187 27.309434944883254 31.790536345002103 22.870797807348453 40 20.183691319530222 26.176974488058598 32.63394603833802 21.005388154073167 41 17.578655698957757 25.543669419721848 32.0833528072483 24.794322074072095 42 20.517155962690204 26.884685490709277 30.438784026493426 22.159374520107093 43 20.270836532619363 25.954905089702418 31.86237839931096 21.911879978367264 44 20.69836352346551 28.6833007284357 29.936130010081925 20.682205738016865 45 18.411035366855174 28.75789361233333 30.470218263638976 22.360852757172523 46 21.62314969987915 28.66017239422326 28.741388634800664 20.975289271096926 47 20.332556602324853 25.75438830763889 30.582815327195156 23.3302397628411 48 20.862665500457357 24.823913522463993 30.942800104157627 23.370620872921023 49 20.849632443764897 23.654009734731897 30.829214878516154 24.667142942987052 50 19.503114713599913 25.74872640596102 31.88499929893906 22.863159581500003 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4181.0 1 3996.0 2 3811.0 3 41975.5 4 80140.0 5 59229.5 6 38319.0 7 39642.0 8 40965.0 9 42907.0 10 44849.0 11 45708.0 12 46567.0 13 45877.0 14 45187.0 15 43491.5 16 41796.0 17 39684.0 18 37572.0 19 36555.5 20 35539.0 21 34066.0 22 32593.0 23 32373.0 24 32153.0 25 33437.0 26 34721.0 27 38567.0 28 42413.0 29 48730.0 30 55047.0 31 61411.5 32 67776.0 33 79244.5 34 90713.0 35 101098.0 36 111483.0 37 123658.0 38 135833.0 39 158083.0 40 180333.0 41 207353.0 42 234373.0 43 267430.5 44 300488.0 45 333755.5 46 367023.0 47 390813.0 48 414603.0 49 397541.5 50 380480.0 51 320105.5 52 259731.0 53 222805.0 54 185879.0 55 158259.5 56 130640.0 57 111265.5 58 91891.0 59 78726.0 60 65561.0 61 55301.0 62 45041.0 63 36047.5 64 27054.0 65 21562.5 66 16071.0 67 12360.5 68 8650.0 69 7360.5 70 6071.0 71 4939.0 72 3807.0 73 3118.5 74 2430.0 75 1758.5 76 1087.0 77 929.0 78 771.0 79 558.5 80 346.0 81 271.0 82 196.0 83 131.5 84 67.0 85 54.0 86 41.0 87 24.5 88 8.0 89 8.0 90 8.0 91 8.5 92 9.0 93 7.0 94 5.0 95 4.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3744325.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.435886217037066 #Duplication Level Percentage of deduplicated Percentage of total 1 78.34308063664402 23.84441088149057 2 8.113792669446026 4.939009409517774 3 3.1325509473079465 2.86025892604009 4 1.7107780095974794 2.082761793708721 5 1.1308583883214958 1.7209338617267484 6 0.8163128291926232 1.4907122632088576 7 0.6151629391689165 1.3106120455038268 8 0.5021119927483888 1.222577878359976 9 0.41890962860889663 1.147489721240547 >10 4.188746301011717 27.729251789297372 >50 0.7465213205047786 15.913115440665662 >100 0.2750456289648951 11.910512641394675 >500 0.003552874482722714 0.7192051101496252 >1k 0.002487012137805369 1.743134321942493 >5k 0.0 0.0 >10k+ 8.882186206447747E-5 1.3660139157530116 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 50530 1.3495089235042363 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCT 4778 0.1276064444192211 No Hit CTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 4318 0.11532118606157318 TruSeq Adapter, Index 16 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTG 4308 0.11505411522771128 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTC 4178 0.11158219438750641 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6707083386191103E-5 0.0 0.0 0.12090296648928713 0.0 2 2.6707083386191103E-5 0.0 0.0 0.4325746296061373 0.0 3 2.6707083386191103E-5 0.0 0.0 0.761926381924646 0.0 4 2.6707083386191103E-5 0.0 0.0 1.1725744960707203 0.0 5 2.6707083386191103E-5 0.0 0.0 1.9132420396199583 0.0 6 2.6707083386191103E-5 0.0 0.0 3.3618342424869634 0.0 7 2.6707083386191103E-5 0.0 0.0 4.332396359824535 0.0 8 2.6707083386191103E-5 0.0 0.0 6.981899274235009 0.0 9 2.6707083386191103E-5 0.0 0.0 8.54853678566898 0.0 10 2.6707083386191103E-5 0.0 0.0 10.67183003612133 0.0 11 2.6707083386191103E-5 0.0 0.0 11.646585165550533 0.0 12 2.6707083386191103E-5 0.0 0.0 12.712411449326648 0.0 13 2.6707083386191103E-5 0.0 0.0 13.340962656820656 0.0 14 2.6707083386191103E-5 0.0 0.0 13.642378799917209 0.0 15 2.6707083386191103E-5 0.0 0.0 13.889686392073338 0.0 16 2.6707083386191103E-5 0.0 0.0 14.319510192090696 0.0 17 2.6707083386191103E-5 0.0 0.0 14.762046563799883 0.0 18 2.6707083386191103E-5 0.0 0.0 15.543121924512429 0.0 19 2.6707083386191103E-5 0.0 0.0 15.83417571925514 0.0 20 2.6707083386191103E-5 0.0 0.0 16.21021145333271 0.0 21 2.6707083386191103E-5 0.0 0.0 16.54439718774412 0.0 22 2.6707083386191103E-5 0.0 0.0 16.88755650217329 0.0 23 2.6707083386191103E-5 0.0 0.0 17.28426351879177 0.0 24 2.6707083386191103E-5 0.0 0.0 17.592009240650853 0.0 25 5.341416677238221E-5 0.0 0.0 17.861029691599956 0.0 26 5.341416677238221E-5 0.0 0.0 18.120408885446643 0.0 27 5.341416677238221E-5 0.0 0.0 18.427139738137047 0.0 28 5.341416677238221E-5 0.0 0.0 18.70711009327449 0.0 29 8.012125015857331E-5 0.0 0.0 19.01514959305082 0.0 30 8.012125015857331E-5 0.0 0.0 19.427907566784402 0.0 31 8.012125015857331E-5 0.0 0.0 19.74233005949003 0.0 32 8.012125015857331E-5 0.0 0.0 20.055123420109098 0.0 33 8.012125015857331E-5 0.0 0.0 20.359557463628292 0.0 34 8.012125015857331E-5 0.0 0.0 20.665086497566318 0.0 35 8.012125015857331E-5 0.0 0.0 20.983702002363575 0.0 36 8.012125015857331E-5 0.0 0.0 21.290459562137368 0.0 37 8.012125015857331E-5 0.0 0.0 21.6035199935903 0.0 38 8.012125015857331E-5 0.0 0.0 21.928465077150086 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTACG 65 0.0 44.000004 1 CGGTCGA 20 7.858763E-4 44.0 24 CGTTTTT 44160 0.0 43.347374 1 CGACGGT 505 0.0 42.69307 28 GCTACGA 115 0.0 40.17391 10 GACGGTC 545 0.0 39.55963 29 GTTTTTT 49410 0.0 38.946365 2 ACGGTCT 555 0.0 38.846848 30 CGTTAGG 700 0.0 38.657146 2 CTAAGCG 40 4.127869E-7 38.5 1 CGCGTAA 80 0.0 38.5 31 CGTAAGG 555 0.0 38.45045 2 TCGATAG 195 0.0 38.35897 1 AGGGCGA 3875 0.0 38.03871 6 TCACGAC 570 0.0 37.82456 25 TATCCGG 210 0.0 37.714287 2 TACGGGA 1375 0.0 37.6 4 GGCACCG 1245 0.0 36.931725 8 CGGTCTA 585 0.0 36.854702 31 TGCGGGT 850 0.0 36.75294 4 >>END_MODULE