##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547241_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2903708 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.409910018500483 31.0 31.0 33.0 30.0 34.0 2 31.80849623998005 31.0 31.0 34.0 30.0 34.0 3 31.932140559587946 33.0 31.0 34.0 30.0 34.0 4 35.625426523603615 37.0 35.0 37.0 33.0 37.0 5 35.524015155793904 37.0 35.0 37.0 33.0 37.0 6 35.56231308382248 37.0 35.0 37.0 33.0 37.0 7 36.03472973177744 37.0 35.0 37.0 35.0 37.0 8 36.03247881674053 37.0 35.0 37.0 35.0 37.0 9 37.75711469610581 39.0 38.0 39.0 35.0 39.0 10 36.988544647051285 39.0 37.0 39.0 32.0 39.0 11 36.88799321419371 39.0 37.0 39.0 32.0 39.0 12 36.5723244210506 39.0 35.0 39.0 32.0 39.0 13 36.46166969957034 39.0 35.0 39.0 32.0 39.0 14 37.55602457271875 40.0 36.0 41.0 32.0 41.0 15 37.70396059107872 40.0 36.0 41.0 33.0 41.0 16 37.73234188837169 40.0 36.0 41.0 33.0 41.0 17 37.645618292197426 40.0 36.0 41.0 33.0 41.0 18 37.57823720566944 39.0 36.0 41.0 33.0 41.0 19 37.51732095651491 39.0 36.0 41.0 33.0 41.0 20 37.345731388968865 39.0 35.0 41.0 32.0 41.0 21 37.26405031084393 39.0 35.0 41.0 32.0 41.0 22 37.19939091671752 39.0 35.0 41.0 32.0 41.0 23 37.1092124276959 39.0 35.0 41.0 32.0 41.0 24 37.06250559629274 39.0 35.0 41.0 32.0 41.0 25 36.8904896773367 38.0 35.0 41.0 31.0 41.0 26 36.81261511143683 38.0 35.0 41.0 31.0 41.0 27 36.7288980159162 38.0 35.0 41.0 31.0 41.0 28 36.779028400927366 38.0 35.0 41.0 31.0 41.0 29 36.70062726692905 38.0 35.0 41.0 31.0 41.0 30 36.64415051375689 38.0 35.0 41.0 31.0 41.0 31 36.51725001274233 38.0 35.0 40.0 31.0 41.0 32 36.27677232008177 38.0 35.0 41.0 30.0 41.0 33 36.144076126111855 38.0 35.0 41.0 30.0 41.0 34 35.97120819311033 38.0 35.0 41.0 29.0 41.0 35 35.757066826278674 38.0 35.0 41.0 28.0 41.0 36 35.59030970056218 38.0 35.0 41.0 27.0 41.0 37 35.541231418586165 38.0 35.0 41.0 27.0 41.0 38 35.44970189840025 38.0 35.0 40.0 27.0 41.0 39 35.36110586877193 38.0 35.0 40.0 26.0 41.0 40 35.21662474325931 38.0 34.0 40.0 25.0 41.0 41 35.19300184453809 38.0 34.0 40.0 25.0 41.0 42 35.00758271837251 38.0 34.0 40.0 25.0 41.0 43 35.04641582418067 38.0 34.0 40.0 25.0 41.0 44 34.79963550053931 38.0 34.0 40.0 24.0 41.0 45 34.713723280715556 37.0 34.0 40.0 24.0 41.0 46 34.704900079484574 37.0 34.0 40.0 24.0 41.0 47 34.61168030669751 37.0 34.0 40.0 24.0 41.0 48 34.568630523454836 37.0 34.0 40.0 23.0 41.0 49 34.559315881624464 37.0 34.0 40.0 24.0 41.0 50 34.03554283006418 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 3.0 12 4.0 13 14.0 14 20.0 15 62.0 16 157.0 17 472.0 18 1033.0 19 1977.0 20 3674.0 21 6060.0 22 9250.0 23 13970.0 24 20457.0 25 30284.0 26 43973.0 27 53258.0 28 56477.0 29 59266.0 30 67433.0 31 80604.0 32 99886.0 33 127913.0 34 200402.0 35 305927.0 36 222418.0 37 282566.0 38 428705.0 39 787439.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.76896299490169 23.38861207807397 27.7205214849427 16.121903442081642 2 34.51431755534647 24.244138873467993 28.09521480810054 13.146328763084995 3 28.33408180161366 24.7498026661083 33.51425143299533 13.40186409928271 4 24.87943002533313 27.54013144572388 33.04106335761034 14.539375171332654 5 22.163867716726337 31.569221147580954 31.910887733890597 14.356023401802108 6 18.937028103376786 40.31903345653213 29.490740804516157 11.253197635574926 7 85.8002939689528 3.251359985232675 8.995945873345391 1.9524001724691327 8 85.66074825705616 2.6128660319839323 8.64725378722654 3.079131923733378 9 80.1943583858983 4.528933350047595 11.91562650238936 3.36108176166474 10 34.96973524886111 26.284977690594236 24.840032124442267 13.90525493610239 11 32.066585207603524 24.455317132438935 27.114641003847495 16.36345665611005 12 29.472419403052925 21.722259951758236 29.27312250405344 19.532198141135403 13 22.80694202034089 28.09752220264572 30.685282404429092 18.410253372584297 14 19.276456172590358 31.13388123048185 30.72247622694844 18.86718636997935 15 18.556308003421833 23.725663875293247 38.99424460035238 18.723783520932546 16 19.917774101252604 21.601311151121255 38.29345099438373 20.187463753242408 17 19.889706540740324 22.339367457058355 31.74723491480548 26.02369108739584 18 22.390818911543448 23.562183249830905 33.06145108254687 20.98554675607878 19 25.08923073532187 27.339043733047536 27.811164207971323 19.760561323659264 20 26.5460576614453 25.170850512517102 27.22491379987244 21.058178026165166 21 23.17009837077282 28.309389236107762 29.13443776027066 19.386074632848757 22 22.02811026453073 23.29810710994356 29.61637327169261 25.057409353833098 23 19.917808539977162 28.37234322459421 28.302983633340546 23.40686460208809 24 20.541080576972615 25.80410977963349 33.42874007992539 20.226069563468503 25 21.281134328933902 26.192509715164196 30.892018067932455 21.63433788796945 26 19.02694761318976 28.56213503561653 29.513332607824204 22.89758474336951 27 20.52482549898268 26.48503224153393 29.94181921873687 23.04832304074652 28 19.58251311771018 26.70998599032685 33.78359669773958 19.923904194223386 29 20.65913652474698 24.584978930388317 32.3684750670522 22.387409477812508 30 21.89531454264685 25.243895047298142 32.294259615636285 20.56653079441872 31 25.723488725450355 24.851121393748958 27.623955301290625 21.80143457951006 32 25.247752184448295 25.25970242186887 28.936621726427035 20.555923667255797 33 24.641389561209323 25.525156110738408 27.054752061846436 22.77870226620583 34 20.67577042870702 27.027717663070806 30.385389991004608 21.91112191721757 35 21.230337210215353 26.18138600713295 29.474795675047215 23.113481107604482 36 24.328548187352173 27.791844083496 27.081752021897522 20.79785570725431 37 22.08593288305849 29.443215364630326 27.133513424903605 21.337338327407576 38 21.536084206814184 30.96154985280889 26.301818226901602 21.20054771347532 39 22.451534382933822 28.66042315549635 25.647895725052244 23.240146736517584 40 23.364918235580163 26.38016632526411 28.55218224422015 21.70273319493558 41 21.25871471924863 25.2383504126448 28.579251081720336 24.923683786386235 42 23.2360829670201 27.07903136265768 26.200499499260943 23.484386171061278 43 22.560532946150232 25.629023303996135 28.190541197668633 23.619902552185 44 22.693500861656887 27.128623126016805 28.682946081355286 21.494929930971022 45 21.02687322554472 27.864165405061392 27.95639230941954 23.15256905997435 46 23.26087884869966 27.212756930104543 27.85052767013763 21.675836551058165 47 22.396156913849463 26.571232369094965 27.914790330157164 23.11782038689841 48 22.659234330724715 25.691564027787916 28.418215605701402 23.230986035785968 49 22.925376794085356 24.21007897488315 28.462779315275505 24.40176491575599 50 20.964435817926596 25.53280150758961 30.007424989014048 23.49533768546975 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3104.0 1 3217.5 2 3331.0 3 23754.5 4 44178.0 5 30509.5 6 16841.0 7 17126.5 8 17412.0 9 18219.5 10 19027.0 11 19028.5 12 19030.0 13 18483.0 14 17936.0 15 16847.0 16 15758.0 17 15055.5 18 14353.0 19 13690.0 20 13027.0 21 12942.5 22 12858.0 23 13233.0 24 13608.0 25 14861.5 26 16115.0 27 20064.0 28 24013.0 29 27545.0 30 31077.0 31 36924.0 32 42771.0 33 49893.0 34 57015.0 35 64995.5 36 72976.0 37 79024.0 38 85072.0 39 101835.5 40 118599.0 41 147033.0 42 175467.0 43 205148.0 44 234829.0 45 255378.0 46 275927.0 47 277461.5 48 278996.0 49 262581.0 50 246166.0 51 222110.0 52 198054.0 53 182644.0 54 167234.0 55 155409.0 56 143584.0 57 138743.0 58 133902.0 59 120844.0 60 107786.0 61 96307.5 62 84829.0 63 75364.5 64 65900.0 65 54195.5 66 42491.0 67 34980.0 68 27469.0 69 25676.5 70 23884.0 71 20355.5 72 16827.0 73 13803.0 74 10779.0 75 8063.0 76 5347.0 77 4396.0 78 3445.0 79 2371.0 80 1297.0 81 1088.5 82 880.0 83 583.0 84 286.0 85 203.0 86 120.0 87 81.5 88 43.0 89 43.0 90 43.0 91 29.0 92 15.0 93 9.5 94 4.0 95 3.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2903708.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.916889152185828 #Duplication Level Percentage of deduplicated Percentage of total 1 77.73052996194737 18.590724688405547 2 7.3102137608869455 3.496751443958331 3 2.7778885946702356 1.9931536078754788 4 1.5471990133448978 1.480167491941648 5 1.0315827014396806 1.2336124560822623 6 0.7571198966006683 1.0864771585147548 7 0.6320116632761827 1.058102702542554 8 0.5422684167645304 1.0375498891590864 9 0.43672188878213036 0.9400526103901895 >10 5.428694735329227 30.601935985256656 >50 1.4247830407236843 23.78211497133808 >100 0.37301474593849826 11.84028858152629 >500 0.00521776164831013 0.8507044050977739 >1k 0.002608880824155065 1.0588654397993809 >5k 0.0 0.0 >10k+ 1.449378235641703E-4 0.9494985681118587 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27391 0.9433111042845906 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 3242 0.11165034500714259 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.066019034971836 0.0 2 0.0 0.0 0.0 0.2412432655074133 0.0 3 0.0 0.0 0.0 0.4577250880598187 0.0 4 0.0 0.0 0.0 0.6738969620912295 0.0 5 0.0 0.0 0.0 1.0382931066071381 0.0 6 0.0 0.0 0.0 1.9680009146925241 0.0 7 0.0 0.0 0.0 2.53754854138226 0.0 8 0.0 0.0 0.0 4.16818771033451 0.0 9 0.0 0.0 0.0 5.110396775433342 0.0 10 0.0 0.0 0.0 6.410424188658088 0.0 11 0.0 0.0 0.0 7.04306355873249 0.0 12 0.0 0.0 0.0 7.650218272636229 0.0 13 0.0 0.0 0.0 8.010412892756435 0.0 14 0.0 0.0 0.0 8.184431767932589 0.0 15 0.0 0.0 0.0 8.320671362271964 0.0 16 0.0 0.0 0.0 8.555922289706816 0.0 17 0.0 0.0 0.0 8.788728067698267 0.0 18 0.0 0.0 0.0 9.194416242955558 0.0 19 0.0 0.0 0.0 9.341159648284194 0.0 20 0.0 0.0 0.0 9.53739150079829 0.0 21 0.0 0.0 0.0 9.724910355999983 0.0 22 0.0 0.0 0.0 9.918938130142562 0.0 23 0.0 0.0 0.0 10.14461509215114 0.0 24 0.0 0.0 0.0 10.322525543202003 0.0 25 0.0 0.0 0.0 10.468098031895769 0.0 26 0.0 0.0 0.0 10.619249593967437 0.0 27 0.0 0.0 0.0 10.820165113021007 0.0 28 0.0 0.0 0.0 10.984127880627115 0.0 29 0.0 0.0 0.0 11.153256456916466 0.0 30 0.0 0.0 0.0 11.396600484621732 0.0 31 0.0 0.0 0.0 11.571790276432754 0.0 32 0.0 0.0 0.0 11.746704558447338 0.0 33 0.0 0.0 0.0 11.928265514301025 0.0 34 0.0 0.0 0.0 12.096636438650167 0.0 35 0.0 0.0 0.0 12.287048146714477 0.0 36 0.0 0.0 0.0 12.457657588159691 0.0 37 0.0 0.0 0.0 12.6424902228461 0.0 38 0.0 0.0 0.0 12.8485026731338 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTACGT 30 2.5290574E-6 44.0 19 TACCGTA 25 4.4445238E-5 44.0 44 CGTTTTT 17680 0.0 42.59389 1 TCGTAAG 205 0.0 41.85366 1 CGACGGT 575 0.0 40.93913 28 CGGTCTA 610 0.0 38.95082 31 TAGCCGT 295 0.0 38.779663 44 ACGGTCT 610 0.0 38.229507 30 CGTTAGG 550 0.0 38.0 2 AGGGCGA 2705 0.0 37.81885 6 GTCGACA 35 7.2940475E-6 37.714287 9 CTATACG 70 0.0 37.714287 1 AGGGTAC 2125 0.0 37.684704 6 TCACGAC 660 0.0 37.666668 25 CTCACGA 685 0.0 37.57664 24 CACGACG 645 0.0 37.519382 26 GGGCGAT 5965 0.0 37.435036 7 GTTTTTT 20560 0.0 37.387157 2 TAGGGTA 2385 0.0 37.174004 5 GCGTAAG 290 0.0 37.172417 1 >>END_MODULE