##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547240_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2722234 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.328237763542738 31.0 31.0 33.0 30.0 34.0 2 31.728506072585972 31.0 31.0 34.0 30.0 34.0 3 31.855827970703473 31.0 31.0 34.0 30.0 34.0 4 35.544814295905496 37.0 35.0 37.0 33.0 37.0 5 35.432095110119114 37.0 35.0 37.0 33.0 37.0 6 35.46585965791332 37.0 35.0 37.0 33.0 37.0 7 35.957897814809456 37.0 35.0 37.0 35.0 37.0 8 35.958143201502885 37.0 35.0 37.0 35.0 37.0 9 37.66412182053416 39.0 37.0 39.0 35.0 39.0 10 36.99040971496205 39.0 37.0 39.0 32.0 39.0 11 36.76192274433425 39.0 37.0 39.0 32.0 39.0 12 36.38114137138835 39.0 35.0 39.0 32.0 39.0 13 36.26475314025172 39.0 35.0 39.0 32.0 39.0 14 37.30205742783317 39.0 35.0 41.0 32.0 41.0 15 37.45647251485361 39.0 35.0 41.0 32.0 41.0 16 37.50473397951829 39.0 35.0 41.0 32.0 41.0 17 37.41955504192512 39.0 35.0 41.0 32.0 41.0 18 37.33814616965331 39.0 36.0 41.0 32.0 41.0 19 37.29433840000529 39.0 35.0 41.0 32.0 41.0 20 37.11948899323129 39.0 35.0 41.0 32.0 41.0 21 37.01727955789252 39.0 35.0 41.0 32.0 41.0 22 36.964881417247746 39.0 35.0 41.0 31.0 41.0 23 36.875443477673116 38.0 35.0 41.0 31.0 41.0 24 36.81021800477108 38.0 35.0 41.0 31.0 41.0 25 36.61398689458731 38.0 35.0 41.0 31.0 41.0 26 36.510609668382656 38.0 35.0 41.0 31.0 41.0 27 36.419185125158236 38.0 35.0 40.0 30.0 41.0 28 36.46355456584555 38.0 35.0 40.0 31.0 41.0 29 36.36562103037432 38.0 35.0 40.0 30.0 41.0 30 36.31299660499428 38.0 35.0 40.0 30.0 41.0 31 36.16176456542678 38.0 35.0 40.0 30.0 41.0 32 35.95584508899676 38.0 35.0 40.0 30.0 41.0 33 35.79097498598578 38.0 35.0 40.0 29.0 41.0 34 35.64870911170752 38.0 35.0 40.0 28.0 41.0 35 35.42355359605383 38.0 35.0 40.0 27.0 41.0 36 35.29877005430099 38.0 34.0 40.0 26.0 41.0 37 35.25960148907111 38.0 34.0 40.0 26.0 41.0 38 35.21316022061292 38.0 34.0 40.0 26.0 41.0 39 35.110760500383144 38.0 34.0 40.0 25.0 41.0 40 34.98489182046804 38.0 34.0 40.0 25.0 41.0 41 34.9428877164858 38.0 34.0 40.0 24.0 41.0 42 34.751488299683274 37.0 34.0 40.0 24.0 41.0 43 34.74099544712174 37.0 34.0 40.0 24.0 41.0 44 34.37966280635684 37.0 33.0 40.0 23.0 41.0 45 34.314311333999946 37.0 33.0 40.0 23.0 41.0 46 34.31941743435722 36.0 33.0 40.0 23.0 41.0 47 34.21889374682706 36.0 33.0 40.0 23.0 41.0 48 34.169410491530115 36.0 33.0 40.0 23.0 41.0 49 34.147929604876 36.0 33.0 40.0 23.0 41.0 50 33.601400173533946 35.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 4.0 13 10.0 14 30.0 15 61.0 16 203.0 17 500.0 18 1163.0 19 2427.0 20 4481.0 21 7100.0 22 10779.0 23 15424.0 24 21621.0 25 31246.0 26 43101.0 27 52261.0 28 56694.0 29 61221.0 30 69148.0 31 82550.0 32 101413.0 33 127398.0 34 199323.0 35 292451.0 36 214189.0 37 268380.0 38 392559.0 39 666491.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.903429315775206 24.00274921259524 28.03825828345396 16.055563188175594 2 33.529336566952 24.723113442856125 28.26288996463934 13.484660025552541 3 29.292007961108414 24.55648559234805 32.59356102377679 13.557945422766743 4 25.05486302793955 27.59171327666909 32.478765602075356 14.874658093316004 5 22.512576068038236 31.70715669556695 31.49872494429208 14.281542292102737 6 19.020150361798436 41.38461278494061 28.744259310551556 10.850977542709407 7 85.53489523677979 3.855546584165799 8.60488113806528 2.004677040989129 8 85.47042612795227 2.894828291763309 8.316661976891039 3.3180836033933896 9 80.18215921188259 4.848628001854359 11.193784222811118 3.77542856345193 10 39.2083487312259 27.2265352647862 17.53938125818721 16.02573474580069 11 32.72701758923002 24.29776426273421 26.928177371967287 16.04704077606848 12 30.479819148537562 20.76268976142389 29.0699109628342 19.68758012720435 13 24.15971588041293 25.92440620460989 30.818144215376048 19.097733699601136 14 19.95037899019702 29.908560395616245 30.512329211963408 19.62873140222332 15 18.424499877674 22.87073778374673 38.89044806581653 19.814314272762736 16 20.527882614058896 20.808314053824912 37.481311305347006 21.18249202676919 17 20.748473496400383 22.163855127810468 31.09791443351306 25.989756942276088 18 22.839072614624605 23.496841197340128 32.37297014143531 21.29111604659996 19 26.438616224762455 26.402616380516886 27.090066467467526 20.06870092725313 20 26.889422437600878 25.172964557785992 26.26317208586771 21.674440918745415 21 23.87050488679518 27.90579355044423 28.56811721549286 19.65558434726772 22 22.79348505675853 23.53063696948903 28.150886367593674 25.524991606158764 23 21.02027232045445 27.783687956288844 27.23006178014087 23.96597794311584 24 21.997300746372282 25.170723751154384 32.079681614438734 20.752293888034608 25 22.46691504110227 25.28919262635027 29.765001833053294 22.478890499494163 26 19.640192577125994 27.795149131191515 28.608451734861884 23.95620655682061 27 21.055243597721578 26.177103070492834 29.43703590506915 23.33061742671644 28 21.143443216123227 26.26144556272532 32.38681906110937 20.20829216004208 29 21.956488678048984 25.10173629452869 30.76447505982219 22.17729996760014 30 23.77205633314403 25.054128337240662 30.394448089326637 20.779367240288675 31 26.740757774680645 25.018826449159036 25.754435511421867 22.485980264738448 32 28.304363254591635 24.887537221267532 25.51562429974793 21.292475224392906 33 25.32938020757951 25.73346009196858 25.160511550439825 23.776648150012086 34 23.75905230777369 25.920585812975666 27.873540628762996 22.446821250487652 35 22.275932193926018 25.35053929970752 27.853703979892984 24.519824526473478 36 26.139009357755434 25.082156787403285 26.238119133035585 22.540714721805692 37 21.68164088759453 27.954503543780586 26.352877820202085 24.010977748422803 38 22.638061239408515 28.268473613950896 24.969161357914125 24.124303788726465 39 21.65993077744235 26.86896130163682 25.049169175023163 26.421938745897673 40 22.71369764685916 24.789492747500766 27.824426555542246 24.672383050097825 41 20.619388340605546 24.54208565464982 28.09475599819854 26.743770006546093 42 23.47446986555895 26.16123375139683 25.207237878889178 25.157058504155046 43 22.058831092404255 25.49876314820842 27.388828440170833 25.053577319216497 44 22.807664587247093 26.697227350771463 27.912773112083677 22.582334949897767 45 21.317491442690084 27.12944588892799 27.93205874292952 23.621003925452406 46 24.10024266833784 26.01407520440932 27.562839932202742 22.322842195050093 47 22.564996249403983 26.22412327522175 27.303971664449122 23.906908810925145 48 23.16924261470542 24.62220367536369 27.772704330340446 24.435849379590437 49 23.257956516596295 23.770623686281194 28.10787022717371 24.863549569948802 50 21.520302810118455 24.96280628336873 29.62886364654912 23.888027259963692 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2988.0 1 3193.5 2 3399.0 3 21244.0 4 39089.0 5 27024.0 6 14959.0 7 15166.0 8 15373.0 9 16018.5 10 16664.0 11 16442.0 12 16220.0 13 15698.5 14 15177.0 15 14409.5 16 13642.0 17 13001.0 18 12360.0 19 11907.5 20 11455.0 21 11176.0 22 10897.0 23 11041.0 24 11185.0 25 12970.5 26 14756.0 27 17740.0 28 20724.0 29 23518.0 30 26312.0 31 31481.0 32 36650.0 33 43023.0 34 49396.0 35 55418.5 36 61441.0 37 68117.0 38 74793.0 39 86502.0 40 98211.0 41 116185.0 42 134159.0 43 150938.5 44 167718.0 45 177565.5 46 187413.0 47 206041.0 48 224669.0 49 246642.0 50 268615.0 51 254920.5 52 241226.0 53 212375.0 54 183524.0 55 165147.5 56 146771.0 57 137303.0 58 127835.0 59 121754.0 60 115673.0 61 106645.5 62 97618.0 63 88837.0 64 80056.0 65 67827.5 66 55599.0 67 47349.0 68 39099.0 69 35231.0 70 31363.0 71 27337.0 72 23311.0 73 18625.5 74 13940.0 75 11431.0 76 8922.0 77 6592.0 78 4262.0 79 3348.5 80 2435.0 81 1913.0 82 1391.0 83 1000.5 84 610.0 85 410.5 86 211.0 87 145.5 88 80.0 89 47.5 90 15.0 91 15.5 92 16.0 93 12.0 94 8.0 95 5.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2722234.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.357163803444692 #Duplication Level Percentage of deduplicated Percentage of total 1 78.02795728973884 19.00539736954355 2 7.2050348860912035 3.509884298601138 3 2.709581711682906 1.9799317677083577 4 1.5433995537748344 1.5037134298182833 5 1.0166523140377015 1.2381383472083693 6 0.7474039987292846 1.0922784974639255 7 0.5959611765843502 1.0161146798991054 8 0.49428526110164606 0.9631509656224979 9 0.4422307584105174 0.9694338319373894 >10 5.45974065148512 31.440109359857765 >50 1.4309797722576498 24.297606154220308 >100 0.31946456279967034 10.304655258031877 >500 0.004263036928706747 0.6987757553367612 >1k 0.002892775058765293 1.0962802568203223 >5k 0.0 0.0 >10k+ 1.5225131888238385E-4 0.8845300279303947 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23852 0.8761921274952851 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 3265 0.11993825659366536 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06182422231152796 0.0 2 0.0 0.0 0.0 0.20633788278303775 0.0 3 0.0 0.0 0.0 0.392398302276733 0.0 4 0.0 0.0 0.0 0.5931158012132682 0.0 5 0.0 0.0 0.0 0.9169674612836369 0.0 6 0.0 0.0 0.0 1.7765188444490811 0.0 7 0.0 0.0 0.0 2.320851183256105 0.0 8 0.0 0.0 0.0 4.021660151184652 0.0 9 0.0 0.0 0.0 5.0651413508170124 0.0 10 0.0 0.0 0.0 6.434421140871799 0.0 11 0.0 0.0 0.0 7.098103983713377 0.0 12 0.0 0.0 0.0 7.723582910212715 0.0 13 0.0 0.0 0.0 8.111756740970835 0.0 14 0.0 0.0 0.0 8.313392603280981 0.0 15 0.0 0.0 0.0 8.446334885244987 0.0 16 0.0 0.0 0.0 8.6730604349222 0.0 17 0.0 0.0 0.0 8.874108544673236 0.0 18 0.0 0.0 0.0 9.249094677386294 0.0 19 0.0 0.0 0.0 9.394710373906138 0.0 20 0.0 0.0 0.0 9.589293205506948 0.0 21 0.0 0.0 0.0 9.765802645915082 0.0 22 0.0 0.0 0.0 9.948189611914332 0.0 23 0.0 0.0 0.0 10.167274378323098 0.0 24 0.0 0.0 0.0 10.332359378363506 0.0 25 0.0 0.0 0.0 10.468240423123067 0.0 26 0.0 0.0 0.0 10.610954091382299 0.0 27 0.0 0.0 0.0 10.79245942854288 0.0 28 0.0 0.0 0.0 10.939507771925559 0.0 29 0.0 0.0 0.0 11.098972388119464 0.0 30 0.0 0.0 0.0 11.323383662095177 0.0 31 0.0 0.0 0.0 11.487293157017362 0.0 32 0.0 0.0 0.0 11.649476128797158 0.0 33 0.0 0.0 0.0 11.817279484423455 0.0 34 0.0 0.0 0.0 11.972115549214358 0.0 35 0.0 0.0 0.0 12.153988231724385 0.0 36 0.0 0.0 0.0 12.308383482095955 0.0 37 0.0 0.0 0.0 12.47640724493192 0.0 38 0.0 0.0 0.0 12.679622692244678 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 15130 0.0 42.05155 1 TACGTAC 65 0.0 40.615387 21 CGGTCTA 690 0.0 38.89855 31 ACGGTCT 690 0.0 38.89855 30 CGACGGT 700 0.0 38.342857 28 TAGGGTA 1685 0.0 38.12463 5 TCACGAC 710 0.0 38.112675 25 ACGGGCT 920 0.0 37.543476 5 CGCATCG 300 0.0 37.4 21 ATGGTCG 300 0.0 37.4 44 CGTACGA 65 1.0913936E-11 37.23077 23 AAGGGAT 2900 0.0 37.096554 5 CGCTGAA 2055 0.0 36.934307 37 TCGTTTA 310 0.0 36.903225 38 TAGCATA 2210 0.0 36.73303 30 TAGGGCA 1690 0.0 36.710056 5 TAAGGGA 2735 0.0 36.680073 4 AGGGATT 2885 0.0 36.67938 6 CTATCCG 30 1.3015632E-4 36.666668 28 GCGTAAG 120 0.0 36.666668 1 >>END_MODULE