##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547239_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2518839 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.35986301625471 31.0 31.0 33.0 30.0 34.0 2 31.74649749348807 31.0 31.0 34.0 30.0 34.0 3 31.873050242591923 31.0 31.0 34.0 30.0 34.0 4 35.55630907731697 37.0 35.0 37.0 33.0 37.0 5 35.428693139974406 37.0 35.0 37.0 33.0 37.0 6 35.463109392859174 37.0 35.0 37.0 33.0 37.0 7 35.972109769620054 37.0 35.0 37.0 35.0 37.0 8 35.963411714682834 37.0 35.0 37.0 35.0 37.0 9 37.6663220634586 39.0 37.0 39.0 35.0 39.0 10 37.025854371795894 39.0 37.0 39.0 33.0 39.0 11 36.77316454128271 39.0 35.0 39.0 32.0 39.0 12 36.063449470172564 37.0 35.0 39.0 32.0 39.0 13 35.753110063803206 37.0 35.0 39.0 31.0 39.0 14 36.759341903154585 39.0 35.0 41.0 31.0 41.0 15 37.024396160294486 39.0 35.0 41.0 32.0 41.0 16 37.14152035918136 38.0 35.0 41.0 32.0 41.0 17 37.07608267142124 38.0 35.0 41.0 32.0 41.0 18 37.06563698592883 38.0 35.0 41.0 32.0 41.0 19 37.0202513935984 38.0 35.0 41.0 32.0 41.0 20 36.85528491499457 38.0 35.0 41.0 32.0 41.0 21 36.72091943947191 38.0 35.0 41.0 31.0 41.0 22 36.64043593099837 38.0 35.0 41.0 31.0 41.0 23 36.57168520893951 38.0 35.0 40.0 31.0 41.0 24 36.52019243786522 38.0 35.0 40.0 31.0 41.0 25 36.330894511320494 38.0 35.0 40.0 31.0 41.0 26 36.21056288234381 38.0 35.0 40.0 31.0 41.0 27 36.10543548039394 38.0 35.0 40.0 30.0 41.0 28 36.20632918578758 38.0 35.0 40.0 31.0 41.0 29 36.14149931774123 37.0 35.0 40.0 31.0 41.0 30 36.14804995476091 37.0 35.0 40.0 31.0 41.0 31 36.01038772227999 37.0 35.0 40.0 30.0 41.0 32 35.80177018062687 37.0 35.0 40.0 30.0 41.0 33 35.74586902934249 38.0 35.0 40.0 30.0 41.0 34 35.66779853734201 37.0 35.0 40.0 30.0 41.0 35 35.52660571001164 37.0 35.0 40.0 29.0 41.0 36 35.36310736811682 37.0 34.0 40.0 28.0 41.0 37 35.305742844223076 37.0 34.0 40.0 28.0 41.0 38 35.26996921994618 37.0 34.0 40.0 28.0 41.0 39 35.18517301026385 37.0 34.0 40.0 27.0 41.0 40 35.03443530928337 37.0 34.0 40.0 27.0 41.0 41 35.02977363777518 36.0 34.0 40.0 27.0 41.0 42 34.826297353661744 36.0 34.0 40.0 26.0 41.0 43 34.831467195799334 36.0 34.0 40.0 27.0 41.0 44 34.577512496828895 36.0 34.0 40.0 26.0 41.0 45 34.47064699252314 35.0 34.0 40.0 26.0 41.0 46 34.47002924760177 35.0 34.0 40.0 26.0 41.0 47 34.350551186479166 35.0 33.0 40.0 26.0 41.0 48 34.31212237066363 35.0 34.0 40.0 26.0 41.0 49 34.329994096486516 35.0 34.0 40.0 26.0 41.0 50 33.78954470690663 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 3.0 12 2.0 13 10.0 14 27.0 15 50.0 16 171.0 17 393.0 18 951.0 19 1922.0 20 3483.0 21 5580.0 22 8717.0 23 12522.0 24 17915.0 25 25099.0 26 34051.0 27 41243.0 28 47388.0 29 53705.0 30 64039.0 31 79169.0 32 98978.0 33 128895.0 34 219233.0 35 376380.0 36 191383.0 37 231810.0 38 328772.0 39 546945.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.59743874062614 24.538964181513784 28.691393137870264 14.172203939989814 2 31.449092220661978 26.121558384636735 29.315887200412572 13.113462194288719 3 28.29140727136589 26.120407060554484 31.931536711953406 13.656648956126215 4 25.56626286952044 28.775836804178432 30.654083091456023 15.003817234845101 5 22.976815906058306 32.47154740735712 29.577793578708285 14.973843107876286 6 19.752235057500698 41.17305631681898 27.317148892803388 11.757559732876931 7 86.39496212342273 4.356451523896525 7.07794344934313 2.170642903337609 8 86.0508353253225 3.6921375284406825 6.58874981687992 3.6682773293568984 9 80.58291935292411 5.411818699011727 9.923143162385529 4.08211878567864 10 46.46343017556898 24.75644533056698 14.589102360254069 14.191022133609968 11 41.25376810506745 22.014189870809528 21.630918053912936 15.101123970210084 12 36.66776637966937 20.20998563226947 25.493530948186844 17.628717039874324 13 22.491235049163524 34.28095245468249 26.981081363278875 16.246731132875105 14 17.036301248313208 38.11069306136676 27.757272298864677 17.095733391455347 15 15.489437792570307 22.469399592431273 44.740652340225004 17.300510274773416 16 16.907551455253788 18.482046688970595 43.54148875732034 21.06891309845528 17 16.531981599459115 20.005049945629715 29.78141913794411 33.681549316967065 18 21.663988845654686 22.59104293684511 32.95700916176064 22.787959055739567 19 28.199579250599182 26.248084931192505 24.403068238978353 21.149267579229956 20 29.47052193490731 24.26987195291164 23.206207304238184 23.053398807942866 21 23.232330450656036 29.65767164951789 25.908801634403787 21.201196265422283 22 22.638326625878033 24.536502730027603 24.015310228244044 28.80986041585032 23 20.062497047250737 31.380767091505252 22.719872131565378 25.836863729678633 24 20.86639916247128 24.827748022005377 33.652250104115424 20.653602711407913 25 20.105096038293834 24.666642052151804 32.09911391716581 23.129147992388557 26 18.237370471078144 31.247729608760228 27.184071709227943 23.33082821093369 27 20.548316109128052 29.06652628453029 27.41211327917346 22.97304432716819 28 18.55386549120448 27.157908861979667 35.01510021085111 19.273125435964744 29 18.85563150324415 24.38516316445791 33.358225754008096 23.40097957828984 30 21.082212876646743 26.989855246802197 30.233293989810385 21.69463788674068 31 28.14173514067394 24.70205519288847 23.944007536805646 23.212202129631944 32 28.795012305272387 24.713727237032618 25.643560386352604 20.84770007134239 33 26.243757540676476 23.706953878354273 26.376755322591084 23.672533258378163 34 19.273562145099387 24.698164511507088 29.27007244210527 26.758200901288255 35 20.102674287638074 22.664767378939267 32.157871146190764 25.0746871872319 36 28.77476488175703 22.456496822544036 25.61279224277534 23.15594605292359 37 21.282543266957514 27.45614150011176 28.747887419561152 22.51342781336957 38 22.865216871741307 29.151406659973105 23.917527082913995 24.065849385371592 39 21.703133864451043 26.994381141470335 25.619144375642904 25.683340618435718 40 24.73822264940316 22.99436367310495 26.55088316482316 25.716530512668733 41 19.292936150345458 21.85383821673398 27.354150066756944 31.49907556616362 42 23.003891872406296 25.329685621034137 24.43586112490715 27.230561381652418 43 22.371338541288267 24.378215519134013 26.624448803595623 26.625997135982093 44 22.10026127116501 26.927207336395853 28.028190765666245 22.94434062677289 45 19.43923371045152 29.928510714658618 26.2742874792712 24.357968095618656 46 23.99899318694049 27.616493154187303 26.487520639469214 21.896993019402984 47 22.889513779959735 24.69351951434768 27.30440492623784 25.11256177945474 48 23.598530910471055 22.883241048753018 28.651533504126302 24.86669453664962 49 22.070287144196197 21.725683936130892 30.03292389866919 26.171105021003726 50 20.610209703756375 27.05631443692908 28.21954876830159 24.11392709101296 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3670.0 1 3589.5 2 3509.0 3 12482.0 4 21455.0 5 14993.0 6 8531.0 7 9290.0 8 10049.0 9 11037.0 10 12025.0 11 12521.5 12 13018.0 13 12305.0 14 11592.0 15 11243.0 16 10894.0 17 10327.0 18 9760.0 19 9435.0 20 9110.0 21 8878.5 22 8647.0 23 9004.0 24 9361.0 25 9648.5 26 9936.0 27 11393.5 28 12851.0 29 16267.5 30 19684.0 31 22115.0 32 24546.0 33 30546.5 34 36547.0 35 36708.0 36 36869.0 37 42965.5 38 49062.0 39 68615.0 40 88168.0 41 121347.0 42 154526.0 43 186516.0 44 218506.0 45 231295.5 46 244085.0 47 254272.5 48 264460.0 49 259930.0 50 255400.0 51 226924.0 52 198448.0 53 171570.5 54 144693.0 55 132108.0 56 119523.0 57 117978.0 58 116433.0 59 108946.5 60 101460.0 61 92313.5 62 83167.0 63 75026.5 64 66886.0 65 54974.0 66 43062.0 67 37313.0 68 31564.0 69 28026.5 70 24489.0 71 21103.0 72 17717.0 73 14354.5 74 10992.0 75 8949.5 76 6907.0 77 5361.5 78 3816.0 79 2654.0 80 1492.0 81 1291.5 82 1091.0 83 841.0 84 591.0 85 379.5 86 168.0 87 108.0 88 48.0 89 29.0 90 10.0 91 11.5 92 13.0 93 8.5 94 4.0 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2518839.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.27437262229028 #Duplication Level Percentage of deduplicated Percentage of total 1 78.70297769213143 17.53059451598335 2 8.305154504242013 3.6998421222635822 3 2.902296855013961 1.9394052482724646 4 1.4869368619768994 1.3248234291796988 5 0.9256615931166282 1.0309265623611314 6 0.6495169809662508 0.8680549955128375 7 0.5081468795141413 0.7923057058806419 8 0.4192211206829191 0.747030996258037 9 0.3314828939538004 0.6645216148057875 >10 3.5933145394970194 18.490572096636313 >50 1.237895986647132 20.038312728257203 >100 0.9268213291300186 30.065631820412868 >500 0.007705573127095281 1.1545968098162993 >1k 0.002687990625730912 1.0937655321367017 >5k 0.0 0.0 >10k+ 1.7919937504872748E-4 0.5596158222230698 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14020 0.5566056425202246 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4805 0.19076249017900707 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2927 0.11620433064598412 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08059268575720799 0.0 2 0.0 0.0 0.0 0.345317823012904 0.0 3 0.0 0.0 0.0 0.5881281018755069 0.0 4 0.0 0.0 0.0 0.8757606182848526 0.0 5 0.0 0.0 0.0 1.4381625820467288 0.0 6 0.0 0.0 0.0 2.506670732031702 0.0 7 0.0 0.0 0.0 3.159550888325931 0.0 8 0.0 0.0 0.0 5.058243103270991 0.0 9 0.0 0.0 0.0 6.179473956056738 0.0 10 0.0 0.0 0.0 7.7192309631540565 0.0 11 0.0 0.0 0.0 8.551677975448213 0.0 12 0.0 0.0 0.0 9.370189996264152 0.0 13 0.0 0.0 0.0 9.799395673959312 0.0 14 0.0 0.0 0.0 9.987458507669604 0.0 15 0.0 0.0 0.0 10.152494859734981 0.0 16 0.0 0.0 0.0 10.47081611806074 0.0 17 0.0 0.0 0.0 10.80204014627374 0.0 18 0.0 0.0 0.0 11.386674575072087 0.0 19 0.0 0.0 0.0 11.59399231153718 0.0 20 0.0 0.0 0.0 11.87606671168741 0.0 21 0.0 0.0 0.0 12.125110020926307 0.0 22 0.0 0.0 0.0 12.359305219587277 0.0 23 0.0 0.0 0.0 12.633558556144319 0.0 24 0.0 0.0 0.0 12.847784237102887 0.0 25 0.0 0.0 0.0 13.02588216237719 0.0 26 0.0 0.0 0.0 13.189092276243143 0.0 27 0.0 0.0 0.0 13.392717835478965 0.0 28 0.0 0.0 0.0 13.579788148428701 0.0 29 0.0 0.0 0.0 13.769994826981796 0.0 30 0.0 0.0 0.0 14.049012263189509 0.0 31 0.0 0.0 0.0 14.264111362417367 0.0 32 0.0 0.0 0.0 14.473017132099352 0.0 33 0.0 0.0 0.0 14.667352697016364 0.0 34 0.0 0.0 0.0 14.851008738549785 0.0 35 0.0 0.0 0.0 15.068013477637912 0.0 36 0.0 0.0 0.0 15.257465840412983 0.0 37 0.0 0.0 0.0 15.45382614768153 0.0 38 0.0 0.0 0.0 15.652211197301614 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 40 8.3200575E-9 44.000004 1 CGTAGAT 20 7.8582694E-4 44.000004 43 TACTCGA 20 7.8582694E-4 44.000004 11 ACGTCGT 20 7.8582694E-4 44.000004 27 TACGTTA 20 7.8582694E-4 44.000004 1 TACCGTT 20 7.8582694E-4 44.000004 13 AGTCGAC 20 7.8582694E-4 44.000004 44 TCTACGA 50 2.7284841E-11 44.0 13 CGCTAAT 25 4.4443572E-5 44.0 13 CGGTCTA 565 0.0 42.053097 31 CACGACG 595 0.0 41.042015 26 CGTTTTT 8540 0.0 40.934425 1 AACGTTG 65 0.0 40.615387 1 ACGTAGG 310 0.0 39.741936 2 TACGGGA 555 0.0 39.63964 4 CAACCCG 190 0.0 39.36842 23 CGACGGT 610 0.0 39.311474 28 CCGAACA 45 2.3528628E-8 39.11111 13 ACGGTAC 45 2.3528628E-8 39.11111 13 TTGGGAC 1205 0.0 39.07054 5 >>END_MODULE