##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547237_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 543034 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.31088845265674 31.0 31.0 33.0 30.0 34.0 2 31.706622421432176 31.0 31.0 34.0 30.0 34.0 3 31.84087000077343 31.0 31.0 34.0 30.0 34.0 4 35.54570247903446 37.0 35.0 37.0 33.0 37.0 5 35.43863735972333 37.0 35.0 37.0 33.0 37.0 6 35.46907560115941 37.0 35.0 37.0 33.0 37.0 7 35.94804929341441 37.0 35.0 37.0 35.0 37.0 8 35.942510045411524 37.0 35.0 37.0 35.0 37.0 9 37.66418861434091 39.0 37.0 39.0 35.0 39.0 10 36.98500830518899 39.0 37.0 39.0 32.0 39.0 11 36.755659866601356 39.0 37.0 39.0 32.0 39.0 12 36.36186131991735 38.0 35.0 39.0 32.0 39.0 13 36.233828821031466 39.0 35.0 39.0 32.0 39.0 14 37.27057421818892 39.0 35.0 41.0 32.0 41.0 15 37.42302691912477 39.0 35.0 41.0 32.0 41.0 16 37.44758523407374 39.0 35.0 41.0 32.0 41.0 17 37.334345547424284 39.0 35.0 41.0 32.0 41.0 18 37.28435604400461 39.0 35.0 41.0 32.0 41.0 19 37.22957678524733 39.0 35.0 41.0 32.0 41.0 20 37.054900798108406 39.0 35.0 41.0 32.0 41.0 21 36.97316374297005 39.0 35.0 41.0 31.0 41.0 22 36.90115536043783 39.0 35.0 41.0 31.0 41.0 23 36.79019177436404 38.0 35.0 41.0 31.0 41.0 24 36.727044715432186 38.0 35.0 41.0 31.0 41.0 25 36.56560362702888 38.0 35.0 40.0 31.0 41.0 26 36.44263158476265 38.0 35.0 40.0 31.0 41.0 27 36.36473590972204 38.0 35.0 40.0 30.0 41.0 28 36.416167311807364 38.0 35.0 40.0 31.0 41.0 29 36.30517426164844 38.0 35.0 40.0 30.0 41.0 30 36.25269872604662 38.0 35.0 40.0 30.0 41.0 31 36.140810704302126 38.0 35.0 40.0 30.0 41.0 32 35.89319084992837 38.0 35.0 40.0 29.0 41.0 33 35.77681692122408 38.0 35.0 40.0 29.0 41.0 34 35.602750472346116 38.0 35.0 40.0 27.0 41.0 35 35.387334863010416 38.0 34.0 40.0 26.0 41.0 36 35.21964186404534 38.0 34.0 40.0 26.0 41.0 37 35.1793349955988 38.0 34.0 40.0 26.0 41.0 38 35.10177079151582 38.0 34.0 40.0 26.0 41.0 39 34.92960661763352 37.0 34.0 40.0 25.0 41.0 40 34.81493792285566 37.0 34.0 40.0 24.0 41.0 41 34.773671630137336 37.0 34.0 40.0 24.0 41.0 42 34.59372157176162 37.0 34.0 40.0 24.0 41.0 43 34.60439309509165 37.0 34.0 40.0 24.0 41.0 44 34.36120758552872 36.0 33.0 40.0 23.0 41.0 45 34.26710298066051 36.0 33.0 40.0 23.0 41.0 46 34.24900282486916 36.0 33.0 40.0 23.0 41.0 47 34.12387437987309 36.0 33.0 40.0 23.0 41.0 48 34.083808748623476 36.0 33.0 40.0 23.0 41.0 49 34.05353808417153 36.0 33.0 40.0 24.0 41.0 50 33.53018227219658 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 6.0 15 24.0 16 50.0 17 120.0 18 240.0 19 544.0 20 886.0 21 1385.0 22 2160.0 23 3096.0 24 4466.0 25 6180.0 26 8520.0 27 10496.0 28 11526.0 29 12333.0 30 13784.0 31 16871.0 32 20533.0 33 26193.0 34 41130.0 35 57721.0 36 43728.0 37 55769.0 38 80019.0 39 125250.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.84907758998516 23.204256087095835 27.072890463580553 15.873775859338457 2 34.172445924196275 24.53474368087449 28.189579289694567 13.103231105234665 3 28.84202462460914 25.774629212903793 32.058581967243306 13.32476419524376 4 25.44794616911648 27.735095776691697 32.015306592220746 14.801651461971074 5 22.72785866078367 31.80684818998442 30.541734035069627 14.92355911416228 6 19.424566417572382 40.8440355484187 28.523628354762316 11.207769679246603 7 85.59261482706424 3.7307056280085593 8.723210701355717 1.9534688435714889 8 85.47383773391721 3.3136046730039004 8.024175281842389 3.188382311236497 9 80.30325909611553 4.6962068673416395 10.882007388119344 4.1185266484234875 10 40.81899107606522 26.88395201773738 17.06817620996107 15.228880696236333 11 33.99289915548566 24.40068209357057 25.116291060964873 16.490127689978895 12 31.179079026359307 20.42082079575128 28.504476699433184 19.89562347845623 13 24.447088027637314 26.448067708467608 29.35304235093935 19.751801912955727 14 20.326719873893715 28.91881539645768 30.38980984616065 20.364654883487958 15 19.338383968591284 22.352375726013474 37.4053926641794 20.903847641215837 16 22.153309000909704 20.123049385489676 35.43553442325894 22.288107190341673 17 21.050799765760523 22.272822696184768 30.685739751102144 25.990637786952565 18 24.000522987510912 22.649042233083012 31.390852138171827 21.959582641234253 19 26.89923651189428 27.332542713715902 25.248511142948693 20.519709631441124 20 28.43247384141693 24.99235775292155 25.266742045617768 21.308426360043754 21 25.095297900315632 28.386620358946217 25.939628089585554 20.578453651152596 22 23.66665807297517 23.315667158962423 27.26182890942372 25.755845858638686 23 22.975172825274292 27.552234298404887 25.76892054641146 23.703672329909363 24 23.232983570089534 24.862715778385883 31.287543689713722 20.61675696181086 25 23.700725921397186 25.207629724842274 27.86271209537524 23.228932258385296 26 20.66205799268554 27.03016754015402 27.95515566244471 24.352618804715725 27 22.296762265346185 24.333098848322575 27.989775962462755 25.38036292386849 28 21.239554061071683 26.0453304949598 30.447448962680053 22.267666481288465 29 22.313704114291184 24.094808059900487 29.611957998946657 23.979529826861672 30 24.041036104553307 24.598828066014285 29.239237322156626 22.12089850727579 31 27.097566634870006 23.906237915121338 25.8897232954106 23.106472154598055 32 26.755783247457803 23.817477358692088 25.24832699241668 24.178412401433427 33 25.28773520626701 24.207508185491147 25.313516280748534 25.191240327493308 34 21.528486245796763 25.94736241193001 27.177672116294744 25.346479225978484 35 22.597111783055944 25.054232331677206 27.637127693661906 24.711528191604945 36 25.525289392561056 27.723310142643005 23.644375858601855 23.107024606194088 37 24.366798395680565 27.261092307295677 25.333036237141688 23.03907305988207 38 24.879657627330886 28.226777697160767 24.638052129332603 22.255512546175744 39 24.527193509062048 26.053248967836268 24.95571179705138 24.463845726050305 40 25.671873216041718 23.561323968664947 27.69034719741305 23.076455617880278 41 21.892920148646308 23.994998471550584 28.21941167588033 25.892669703922778 42 24.36956065366073 26.08473870881013 24.66475395647418 24.88094668105496 43 22.49140937768169 24.61024539899896 27.35850793872944 25.539837284589918 44 23.244032602010186 25.44665711539241 27.869893966123666 23.43941631647374 45 22.159754269530087 26.53314525425664 26.648239336763446 24.65886113944983 46 24.16883657376886 26.08289720349002 26.74952212936943 22.998744093371688 47 22.776842702298566 25.757871514490805 27.390365980767317 24.074919802443308 48 23.71343230810594 24.329599988214365 27.862896245907255 24.094071457772444 49 23.899056044372912 23.47072190691559 27.626078661741253 25.004143386970245 50 22.226048461054006 24.62976535539211 28.95417229860377 24.190013884950112 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 602.0 1 626.0 2 650.0 3 4338.0 4 8026.0 5 5381.0 6 2736.0 7 2809.5 8 2883.0 9 2954.5 10 3026.0 11 2966.5 12 2907.0 13 2888.5 14 2870.0 15 2727.5 16 2585.0 17 2436.0 18 2287.0 19 2187.0 20 2087.0 21 2158.5 22 2230.0 23 2161.5 24 2093.0 25 2268.5 26 2444.0 27 3013.0 28 3582.0 29 4384.5 30 5187.0 31 5858.5 32 6530.0 33 7741.0 34 8952.0 35 10318.0 36 11684.0 37 12855.5 38 14027.0 39 15841.0 40 17655.0 41 21394.5 42 25134.0 43 27527.0 44 29920.0 45 32021.5 46 34123.0 47 37092.5 48 40062.0 49 44154.5 50 48247.0 51 47479.0 52 46711.0 53 42044.0 54 37377.0 55 34200.5 56 31024.0 57 30107.0 58 29190.0 59 28225.5 60 27261.0 61 25079.0 62 22897.0 63 21295.0 64 19693.0 65 16544.5 66 13396.0 67 11682.5 68 9969.0 69 9146.0 70 8323.0 71 7233.0 72 6143.0 73 5005.5 74 3868.0 75 2965.5 76 2063.0 77 1724.5 78 1386.0 79 988.0 80 590.0 81 483.0 82 376.0 83 266.0 84 156.0 85 107.0 86 58.0 87 36.5 88 15.0 89 8.5 90 2.0 91 3.5 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 543034.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.599136423787606 #Duplication Level Percentage of deduplicated Percentage of total 1 70.25873938705176 26.416679271770988 2 8.030968610034373 6.039149687676766 3 4.407195701628064 4.971202572955318 4 3.050219917553637 4.587425392106135 5 2.41306500890809 4.536458023470176 6 1.8960340639722055 4.277354606126363 7 1.5379714414155123 4.047847862916979 8 1.2952851878856424 3.89612835896189 9 1.1200721532296365 3.7902371124389975 >10 5.9315181905470995 33.966761009235434 >50 0.03879580570147881 0.9954166169037925 >100 0.018661273628159766 1.343470841118953 >500 9.82172296218935E-4 0.2199111835861288 >1k 4.910861481094675E-4 0.9119574607320655 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4939 0.9095194776017708 No Hit TCTGGGAACATGGTCAAGCGAGACACGACCAAAGTGAAACACGTGAGGGC 645 0.11877709314702209 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 546 0.10054619047794427 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04879989098288505 0.0 2 0.0 0.0 0.0 0.1821248761587672 0.0 3 0.0 0.0 0.0 0.3279720975113897 0.0 4 0.0 0.0 0.0 0.5134116832463529 0.0 5 0.0 0.0 0.0 0.8605354360868749 0.0 6 0.0 0.0 0.0 1.7133365498292925 0.0 7 0.0 0.0 0.0 2.2493987485129843 0.0 8 0.0 0.0 0.0 3.827200506782264 0.0 9 0.0 0.0 0.0 4.73561508119197 0.0 10 0.0 0.0 0.0 5.962241774916488 0.0 11 0.0 0.0 0.0 6.5170873278652905 0.0 12 0.0 0.0 0.0 7.05480688133708 0.0 13 0.0 0.0 0.0 7.3870144410847205 0.0 14 1.8415053201088698E-4 0.0 0.0 7.56748196245539 0.0 15 1.8415053201088698E-4 0.0 0.0 7.698044689651108 0.0 16 1.8415053201088698E-4 0.0 0.0 7.882011071129985 0.0 17 1.8415053201088698E-4 0.0 0.0 8.056954076540327 0.0 18 1.8415053201088698E-4 0.0 0.0 8.376823550643238 0.0 19 1.8415053201088698E-4 0.0 0.0 8.508675331563033 0.0 20 1.8415053201088698E-4 0.0 0.0 8.658942165683916 0.0 21 1.8415053201088698E-4 0.0 0.0 8.804421085972518 0.0 22 1.8415053201088698E-4 0.0 0.0 8.950268307325139 0.0 23 1.8415053201088698E-4 0.0 0.0 9.121528302095264 0.0 24 1.8415053201088698E-4 0.0 0.0 9.273268340472235 0.0 25 1.8415053201088698E-4 0.0 0.0 9.4029103150079 0.0 26 1.8415053201088698E-4 0.0 0.0 9.533288891671608 0.0 27 1.8415053201088698E-4 0.0 0.0 9.680425166748307 0.0 28 1.8415053201088698E-4 0.0 0.0 9.812276947668101 0.0 29 1.8415053201088698E-4 0.0 0.0 9.94652268550404 0.0 30 1.8415053201088698E-4 0.0 0.0 10.140249045179491 0.0 31 1.8415053201088698E-4 0.0 0.0 10.2892268255763 0.0 32 1.8415053201088698E-4 0.0 0.0 10.465090583646695 0.0 33 1.8415053201088698E-4 0.0 0.0 10.620513632663885 0.0 34 1.8415053201088698E-4 0.0 0.0 10.765440101356452 0.0 35 1.8415053201088698E-4 0.0 0.0 10.92694011793 0.0 36 1.8415053201088698E-4 0.0 0.0 11.082179016415179 0.0 37 1.8415053201088698E-4 0.0 0.0 11.245336387776824 0.0 38 1.8415053201088698E-4 0.0 0.0 11.4394310485163 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGATTG 60 0.0 44.000004 1 TTTAGCG 25 4.4397286E-5 44.0 1 GTTTACG 35 1.4442048E-7 44.0 1 CTAAGCG 20 7.8528083E-4 44.0 1 TACGCGG 25 4.4397286E-5 44.0 2 GTATGCG 20 7.8528083E-4 44.0 1 TGACACG 20 7.8528083E-4 44.0 19 GCGATAA 55 1.8189894E-12 44.0 9 ATAACGG 25 4.4397286E-5 44.0 2 ATACCGG 20 7.8528083E-4 44.0 2 CGTTTTT 2585 0.0 42.38298 1 TTGCTAG 80 0.0 41.25 1 ACGGGTA 60 3.6379788E-12 40.333336 5 TATGGGC 230 0.0 40.17391 4 GTAGCAT 335 0.0 40.059704 29 AATACGG 55 7.8216544E-11 40.0 2 CGACGGT 105 0.0 39.80952 28 CGGTCTA 105 0.0 39.80952 31 CGCATGG 50 1.3442332E-9 39.6 2 TAGCATA 335 0.0 39.402985 30 >>END_MODULE