##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547236_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2430597 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.372053450242884 31.0 31.0 33.0 30.0 34.0 2 31.77237485276251 31.0 31.0 34.0 30.0 34.0 3 31.846534822514798 31.0 31.0 34.0 30.0 34.0 4 35.57831676744438 37.0 35.0 37.0 33.0 37.0 5 35.482667426973705 37.0 35.0 37.0 33.0 37.0 6 35.51669034397722 37.0 35.0 37.0 33.0 37.0 7 36.00110055266258 37.0 35.0 37.0 35.0 37.0 8 35.99633875957224 37.0 35.0 37.0 35.0 37.0 9 37.71326015789536 39.0 37.0 39.0 35.0 39.0 10 36.996470003048636 39.0 37.0 39.0 32.0 39.0 11 36.85764114742181 39.0 37.0 39.0 32.0 39.0 12 36.61725288067088 39.0 35.0 39.0 32.0 39.0 13 36.59191013565803 39.0 35.0 39.0 32.0 39.0 14 37.7270448371326 40.0 36.0 41.0 32.0 41.0 15 37.8243744232384 40.0 36.0 41.0 33.0 41.0 16 37.81514294636256 40.0 36.0 41.0 33.0 41.0 17 37.74069909573656 40.0 36.0 41.0 32.0 41.0 18 37.549945959778604 39.0 36.0 41.0 32.0 41.0 19 37.38770145770771 39.0 36.0 41.0 32.0 41.0 20 37.10213540130264 39.0 35.0 41.0 32.0 41.0 21 37.02096686534214 39.0 35.0 41.0 32.0 41.0 22 36.94713109577606 38.0 35.0 41.0 32.0 41.0 23 36.83913499440673 38.0 35.0 41.0 32.0 41.0 24 36.78086577083737 38.0 35.0 41.0 32.0 41.0 25 36.620197424747914 38.0 35.0 40.0 31.0 41.0 26 36.53775841902216 38.0 35.0 40.0 31.0 41.0 27 36.41416738356873 38.0 35.0 40.0 31.0 41.0 28 36.44137551391695 38.0 35.0 40.0 31.0 41.0 29 36.324989292754005 38.0 35.0 40.0 31.0 41.0 30 36.211363710232504 38.0 35.0 40.0 30.0 41.0 31 35.97164688346114 38.0 35.0 40.0 30.0 41.0 32 35.520161507646066 38.0 35.0 40.0 27.0 41.0 33 35.15017257077171 38.0 34.0 40.0 24.0 41.0 34 34.77067074467713 38.0 34.0 40.0 22.0 41.0 35 34.43013136278865 38.0 34.0 40.0 19.0 41.0 36 34.25512086125343 38.0 34.0 40.0 18.0 41.0 37 34.19033184028451 38.0 34.0 40.0 18.0 41.0 38 34.12870747392513 38.0 33.0 40.0 18.0 41.0 39 34.00342508445456 38.0 33.0 40.0 18.0 41.0 40 33.910329026161065 38.0 33.0 40.0 17.0 41.0 41 33.87241858687393 38.0 33.0 40.0 17.0 41.0 42 33.67606312358651 37.0 33.0 40.0 15.0 41.0 43 33.68731879451838 37.0 33.0 40.0 15.0 41.0 44 33.430077055143244 37.0 33.0 40.0 15.0 41.0 45 33.34065499134575 37.0 33.0 40.0 15.0 41.0 46 33.33255862654319 37.0 33.0 40.0 15.0 41.0 47 33.23351423539155 37.0 33.0 40.0 15.0 41.0 48 33.16679647016762 36.0 32.0 40.0 15.0 41.0 49 33.13512647304346 36.0 32.0 40.0 15.0 41.0 50 32.647987305176464 36.0 31.0 40.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 7.0 12 7.0 13 7.0 14 30.0 15 77.0 16 178.0 17 539.0 18 1273.0 19 2572.0 20 4588.0 21 7418.0 22 11470.0 23 16689.0 24 25501.0 25 40394.0 26 61462.0 27 71003.0 28 66879.0 29 60616.0 30 62528.0 31 70671.0 32 84838.0 33 105030.0 34 155461.0 35 216555.0 36 186336.0 37 233418.0 38 343765.0 39 601283.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.01822309498448 22.148426909109162 25.289219068401714 21.544130927504643 2 38.87678623811352 22.96402900192833 25.816455792548087 12.342728967410064 3 26.77506801826876 23.207425994519042 37.17909632900888 12.838409658203314 4 22.92082973853749 25.67825929185299 37.44137757102473 13.959533398584792 5 20.613742220532654 29.436512922545365 36.61804075295082 13.331704103971164 6 17.26193194511472 38.55698826255443 34.07706008030126 10.104019712029597 7 79.54255682863099 3.3634123633000454 15.121182162242444 1.9728486458265193 8 79.55230751951063 2.725297529783835 14.830265979921805 2.892128970783721 9 73.99136919859608 4.796722780452703 17.558690313532026 3.653217707419206 10 33.957212981008375 24.033190199773966 26.438031479508943 15.571565339708721 11 28.353980524126378 25.40223656986329 30.378544859555078 15.865238046455254 12 23.780988785882645 21.516771394023774 36.346502525922645 18.355737294170936 13 21.572148735475277 24.442801501030406 37.286518497307455 16.698531266186865 14 19.112176967222457 27.266346498411707 36.34625567298898 17.275220861376855 15 18.251483071854363 23.342536833543363 41.456317110569955 16.94966298403232 16 19.51376554813488 21.815298875132324 40.1592283706431 18.511707206089696 17 19.754817437855802 22.68874683873962 35.8671552709067 21.689280452497883 18 21.72017821136124 23.06951748891322 36.65371100186498 18.556593297860566 19 24.14624884339115 26.335505227728 32.24537017037378 17.272875758507066 20 24.180972822726268 24.16817761233146 32.48806774631912 19.162781818623163 21 22.982872109197864 26.14797928245612 33.40294586062601 17.466202747720004 22 21.50615671787631 23.392606836921136 33.503168151692776 21.598068293509783 23 20.010803930063272 26.520480359352046 32.86303735255166 20.60567835803303 24 20.135505803718182 24.656411572959236 35.776313391319086 19.431769232003496 25 20.41387362857767 25.13226174474831 34.38764221300364 20.06622241367039 26 18.77320674714895 26.18406095292638 34.50382766044721 20.53890463947746 27 20.17882849357586 24.433955937574183 34.50271682224573 20.88449874660423 28 20.338007493632222 25.052610531486707 36.04748133894677 18.5619006359343 29 20.53717666894183 24.531709699304326 34.59705578506021 20.334057846693632 30 20.999984777402425 24.103131864311525 34.93351633364149 19.963367024644562 31 23.521217215359023 23.612923080214447 31.973338237478284 20.892521466948246 32 23.41070938538968 23.815795049528983 32.227761327772555 20.54573423730878 33 23.540142606939778 24.04458657687803 30.14366429317571 22.271606523006486 34 20.745808540041807 25.40441710411064 31.38484084362813 22.464933512219424 35 21.61629426844516 25.592930461117163 29.831683327182578 22.959091943255096 36 23.534835268866043 26.120907744064525 27.373233818687343 22.97102316838209 37 21.447158866731094 28.93988596217308 28.005341897484442 21.60761327361138 38 22.714378401684854 28.77165568788244 27.18694213808377 21.327023772348934 39 21.935763106759367 28.30855958433257 27.15913004089119 22.59654726801687 40 22.759552488544994 26.029819011543253 29.22615308090975 21.984475419002 41 20.72108210452 26.14686844425464 29.29193938773067 23.840110063494688 42 22.069145975248055 27.551626205413733 27.957987276376954 22.421240542961257 43 21.644805782283118 26.372204030532416 29.262975310180995 22.720014877003468 44 21.782919998666994 27.457081531821192 29.48349726425236 21.27650120525945 45 20.704748668742702 27.400716778635044 29.780831622848215 22.113702929774043 46 23.11979320306904 26.80106986061449 28.48209719669694 21.597039739619525 47 21.910337254592186 26.28905573404394 29.298851269873204 22.50175574149067 48 22.532365505264757 25.503981120687634 29.424375986640317 22.539277387407292 49 22.393798725169166 24.59708458456914 29.769517530055374 23.23959916020632 50 21.13279165571257 25.053433374598917 30.877516922797156 22.93625804689136 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2172.0 1 2465.0 2 2758.0 3 31939.0 4 61120.0 5 43792.0 6 26464.0 7 26684.5 8 26905.0 9 27854.5 10 28804.0 11 28573.0 12 28342.0 13 27846.0 14 27350.0 15 26289.0 16 25228.0 17 23911.5 18 22595.0 19 21324.5 20 20054.0 21 19675.5 22 19297.0 23 18901.5 24 18506.0 25 19565.5 26 20625.0 27 22258.0 28 23891.0 29 27583.5 30 31276.0 31 36175.0 32 41074.0 33 45374.5 34 49675.0 35 57337.0 36 64999.0 37 70232.5 38 75466.0 39 85031.0 40 94596.0 41 107443.5 42 120291.0 43 132929.0 44 145567.0 45 150429.5 46 155292.0 47 169324.0 48 183356.0 49 199431.0 50 215506.0 51 208809.0 52 202112.0 53 176739.5 54 151367.0 55 135176.5 56 118986.0 57 110670.0 58 102354.0 59 93740.0 60 85126.0 61 77209.0 62 69292.0 63 62320.5 64 55349.0 65 45331.0 66 35313.0 67 30379.0 68 25445.0 69 22984.0 70 20523.0 71 17403.5 72 14284.0 73 11560.5 74 8837.0 75 6894.0 76 4951.0 77 3953.0 78 2955.0 79 2171.5 80 1388.0 81 1006.0 82 624.0 83 463.0 84 302.0 85 206.5 86 111.0 87 75.0 88 39.0 89 31.0 90 23.0 91 14.0 92 5.0 93 3.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2430597.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.114686318340446 #Duplication Level Percentage of deduplicated Percentage of total 1 75.5968855960178 25.033671531555985 2 7.300485296569363 4.835065611351022 3 3.3769251674546625 3.3547745292231137 4 2.131069997800338 2.8227885799833863 5 1.4588531058065173 2.415473149165977 6 1.182568635618668 2.3496233651052014 7 0.9321092397831685 2.160655356289248 8 0.7572462208341432 2.006077685493713 9 0.6715217665253068 2.0013509388981046 >10 6.265812980069185 41.976344217860465 >50 0.2808516533703343 5.919409568288086 >100 0.04216845077943753 2.419036182276967 >500 0.001750944685606313 0.3684755084764489 >1k 0.0016258772080629982 0.8356446369033703 >5k 0.0 0.0 >10k+ 1.2506747754330755E-4 1.5016091391289832 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36257 1.4916911359637157 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCT 2541 0.10454221740584721 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06228922359403883 0.0 2 0.0 0.0 0.0 0.21661344928838472 0.0 3 0.0 0.0 0.0 0.44655695699451614 0.0 4 0.0 0.0 0.0 0.6125244127265853 0.0 5 0.0 0.0 0.0 0.9508775004659349 0.0 6 0.0 0.0 0.0 1.8332533118406713 0.0 7 0.0 0.0 0.0 2.407104098293547 0.0 8 0.0 0.0 0.0 3.8748504996920508 0.0 9 0.0 0.0 0.0 4.815524745566624 0.0 10 0.0 0.0 0.0 6.008894111199841 0.0 11 0.0 0.0 0.0 6.5360074088793825 0.0 12 0.0 0.0 0.0 7.07262454450491 0.0 13 0.0 0.0 0.0 7.478121630200317 0.0 14 0.0 0.0 0.0 7.690250584527176 0.0 15 0.0 0.0 0.0 7.833055006650629 0.0 16 0.0 0.0 0.0 8.037654946500798 0.0 17 0.0 0.0 0.0 8.233409322894746 0.0 18 0.0 0.0 0.0 8.60858463990534 0.0 19 0.0 0.0 0.0 8.749455380715109 0.0 20 0.0 0.0 0.0 8.937516174009925 0.0 21 0.0 0.0 0.0 9.101015100405373 0.0 22 0.0 0.0 0.0 9.274717281392185 0.0 23 0.0 0.0 0.0 9.475984706637917 0.0 24 0.0015222597575821908 0.0 0.0 9.650962294448648 0.0 25 0.0015222597575821908 0.0 0.0 9.805615657387877 0.0 26 0.0015222597575821908 0.0 0.0 9.959446177214899 0.0 27 0.0015222597575821908 0.0 0.0 10.176759043148659 0.0 28 0.0015222597575821908 0.0 0.0 10.342891067503169 0.0 29 0.0015222597575821908 0.0 0.0 10.518033223936342 0.0 30 0.0015222597575821908 0.0 0.0 10.758097701922614 0.0 31 0.0015222597575821908 0.0 0.0 10.940563162054426 0.0 32 0.0015222597575821908 0.0 0.0 11.12734854852532 0.0 33 0.0015222597575821908 0.0 0.0 11.32446061605441 0.0 34 0.0015222597575821908 0.0 0.0 11.519721286581033 0.0 35 0.0015222597575821908 0.0 0.0 11.722264118650685 0.0 36 0.0015222597575821908 0.0 0.0 11.909831206078177 0.0 37 0.0015222597575821908 0.0 0.0 12.11113977347952 0.0 38 0.0015222597575821908 0.0 0.0 12.325366977742505 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 29780 0.0 43.24647 1 TCGTTAG 100 0.0 39.600002 1 GTTTTTT 33695 0.0 38.80279 2 AGGGCGA 2450 0.0 37.624493 6 ACGGGTA 345 0.0 37.62319 5 TAATGCG 65 1.0913936E-11 37.230766 1 CGACGGT 255 0.0 37.09804 28 ACTACGG 120 0.0 36.666668 2 TGGGCGA 1605 0.0 36.323986 6 TAGGGCG 1205 0.0 35.966805 5 CGTTAGG 365 0.0 35.56164 2 GGGCGAT 5060 0.0 35.47826 7 GTAGGGT 1415 0.0 35.44876 4 ATAGGGC 1585 0.0 35.25552 4 AAGGGCG 1205 0.0 35.236515 5 ACCAACG 25 0.0023532591 35.2 26 GCGCGAC 1185 0.0 35.088608 9 TAGGGTA 1825 0.0 34.9589 5 GGCGATA 1190 0.0 34.941177 8 TACGGGT 265 0.0 34.867924 4 >>END_MODULE