##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547234_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1403545 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.43785129796337 31.0 31.0 33.0 30.0 34.0 2 31.841574014370753 31.0 31.0 34.0 30.0 34.0 3 31.926970635070482 33.0 31.0 34.0 30.0 34.0 4 35.646705306919266 37.0 35.0 37.0 33.0 37.0 5 35.56265385149746 37.0 35.0 37.0 33.0 37.0 6 35.59605427684898 37.0 35.0 37.0 33.0 37.0 7 36.00971397425804 37.0 35.0 37.0 35.0 37.0 8 35.99644257932592 37.0 35.0 37.0 35.0 37.0 9 37.718240597914566 39.0 38.0 39.0 35.0 39.0 10 37.144568218332864 39.0 37.0 39.0 33.0 39.0 11 36.966872455104756 39.0 37.0 39.0 33.0 39.0 12 36.74741030747144 39.0 35.0 39.0 32.0 39.0 13 36.73102465542608 39.0 35.0 39.0 32.0 39.0 14 37.88320787719667 40.0 37.0 41.0 33.0 41.0 15 37.94775799849666 40.0 37.0 41.0 33.0 41.0 16 37.96585431888539 40.0 36.0 41.0 33.0 41.0 17 37.874246283517806 40.0 36.0 41.0 33.0 41.0 18 37.71984866890623 39.0 36.0 41.0 33.0 41.0 19 37.57596942028934 39.0 36.0 41.0 33.0 41.0 20 37.32585702631551 39.0 35.0 41.0 32.0 41.0 21 37.21431161808136 39.0 35.0 41.0 32.0 41.0 22 37.1610073064989 39.0 35.0 41.0 32.0 41.0 23 37.05065459247833 39.0 35.0 41.0 32.0 41.0 24 36.95476454264024 39.0 35.0 41.0 32.0 41.0 25 36.76907402327677 38.0 35.0 41.0 31.0 41.0 26 36.67522808317511 38.0 35.0 41.0 31.0 41.0 27 36.56721658372193 38.0 35.0 40.0 31.0 41.0 28 36.58932203812489 38.0 35.0 40.0 31.0 41.0 29 36.46419245553224 38.0 35.0 40.0 31.0 41.0 30 36.3639690925478 38.0 35.0 40.0 31.0 41.0 31 36.17029236682828 38.0 35.0 40.0 30.0 41.0 32 35.7790851023658 38.0 35.0 40.0 28.0 41.0 33 35.486554403314464 38.0 35.0 40.0 26.0 41.0 34 35.14476913814662 38.0 34.0 40.0 24.0 41.0 35 34.79798153960151 38.0 34.0 40.0 23.0 41.0 36 34.60485413720259 38.0 34.0 40.0 22.0 41.0 37 34.50528198240883 38.0 34.0 40.0 21.0 41.0 38 34.40431122621647 38.0 34.0 40.0 21.0 41.0 39 34.24387817989448 37.0 33.0 40.0 21.0 41.0 40 34.120356668293496 37.0 33.0 40.0 20.0 41.0 41 34.05499289299595 37.0 33.0 40.0 20.0 41.0 42 33.85656177749912 37.0 33.0 40.0 18.0 41.0 43 33.867305287682264 37.0 33.0 40.0 18.0 41.0 44 33.60840799546862 36.0 33.0 40.0 18.0 41.0 45 33.497207428333255 36.0 33.0 40.0 18.0 41.0 46 33.471473305095316 36.0 33.0 40.0 19.0 41.0 47 33.35101902682137 36.0 33.0 40.0 18.0 41.0 48 33.29899718213524 35.0 33.0 40.0 19.0 41.0 49 33.24044544350199 35.0 33.0 40.0 19.0 41.0 50 32.76115479019198 35.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 4.0 12 5.0 13 5.0 14 17.0 15 39.0 16 98.0 17 239.0 18 607.0 19 1190.0 20 2184.0 21 3610.0 22 5440.0 23 8017.0 24 11986.0 25 19077.0 26 28711.0 27 37015.0 28 37194.0 29 34302.0 30 35486.0 31 40226.0 32 48471.0 33 61235.0 34 91823.0 35 125087.0 36 122806.0 37 154864.0 38 215822.0 39 317982.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.09344908784542 21.34701773010484 25.173257715285224 21.386275466764516 2 38.38886533741348 23.192202601270353 25.83814555286792 12.580786508448249 3 27.86002586308241 24.026803558133157 35.307596122675086 12.805574456109351 4 24.46298479920487 26.054811210185637 34.96453622790862 14.517667762700876 5 21.659440915681362 29.605748301621965 33.88890274269795 14.845908039998717 6 19.090089737058662 38.19670904744771 31.908203869487618 10.804997346006006 7 80.9896369549961 3.54815841316096 13.40413025588777 2.058074375955171 8 80.73862968412128 3.1481712378299234 13.348271697736802 2.764927380311996 9 75.77619527695941 4.900519755333815 15.486500254712176 3.836784712994596 10 35.79450605431248 28.890630510599948 21.250191479432438 14.064671955655145 11 28.673181123512247 24.244894178669014 29.460402053371997 17.621522644446742 12 25.370187632031747 20.24858483340399 34.51667028844818 19.864557246116085 13 23.219348150575865 23.16313335162036 34.35265702204062 19.264861475763155 14 20.625416356440297 25.615281305551303 34.021281825662875 19.738020512345525 15 18.31783092098935 22.06804911848213 38.299520143636286 21.314599816892226 16 20.852056756284977 20.75010063802728 36.482549544189894 21.915293061497852 17 20.834672205023708 21.129639591178055 33.7166246896252 24.31906351417304 18 23.267013170222544 20.898011820069897 34.05441222048456 21.780562789223005 19 25.40061059673897 24.390026682436257 29.347259973851926 20.862102746972845 20 27.25897637767225 21.76602816439801 29.319615687420068 21.655379770509672 21 25.0928897897823 24.166521201671483 30.412134986765654 20.328454021780562 22 24.254085191425997 20.6722263981561 29.93954593547054 25.134142474947364 23 22.214606585467514 25.38393852708677 29.56314190139967 22.83831298604605 24 21.607358510058457 23.472136625473354 33.570993448731606 21.34951141573658 25 23.43152517375645 23.861579072990178 30.533755597433643 22.17314015581973 26 21.364259785044297 24.012126436986346 30.412348731248372 24.211265046720982 27 22.112864211692536 22.434335913704228 31.53279730966944 23.920002564933792 28 21.751849780377544 23.758839224962504 32.789187379100774 21.70012361555917 29 22.22116141627094 22.584598285056767 31.65669786148645 23.53754243718584 30 23.284825210449256 21.976210239073204 33.13003858087913 21.60892596959841 31 25.873840881482245 22.339575859698122 28.92112472346808 22.865458535351557 32 25.11839663138695 23.038092829228844 29.494458674285468 22.349051865098733 33 24.63896775664478 23.12095444036351 27.605883673127686 24.634194129864024 34 23.283898984357464 24.179132126151995 29.58145267875273 22.955516210737812 35 24.254655176713253 23.392552429740405 29.205333637325488 23.147458756220853 36 27.622199501975352 25.012949353244817 25.602527884748977 21.76232326003085 37 24.468684652077417 26.35562094553434 26.635982458702784 22.539711943685454 38 24.933650150155497 26.29164009704 27.280849563070653 21.49386018973385 39 24.39700900220513 25.65012165623475 25.89322038124891 24.05964896031121 40 25.815274893216817 24.06940995835545 29.076374466084093 21.038940682343636 41 23.037807836585216 24.260212533263985 28.966937290931178 23.73504233921962 42 24.013978889169923 26.288576426121 25.876904552401243 23.820540132307837 43 23.23345528643542 24.849221079480884 27.82611173849075 24.091211895592945 44 24.293841665212014 24.582681709528373 29.136294169406753 21.987182455852857 45 23.056189862099185 24.795642462478938 28.135471253148275 24.0126964222736 46 24.424867033119707 24.76194208237 27.959773288351997 22.853417596158298 47 23.359422034918722 26.047828890416767 28.443477052748577 22.149272021915934 48 23.7192252474983 24.628565525152382 28.348645750581564 23.303563476767756 49 23.644842167511552 24.798207396271586 28.330976206676667 23.2259742295402 50 22.20206690914791 24.58731283998732 30.597807694088896 22.61281255677588 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1014.0 1 1433.0 2 1852.0 3 20247.0 4 38642.0 5 26321.5 6 14001.0 7 14047.5 8 14094.0 9 14321.0 10 14548.0 11 14288.0 12 14028.0 13 13555.0 14 13082.0 15 12284.5 16 11487.0 17 10673.5 18 9860.0 19 9272.0 20 8684.0 21 8245.5 22 7807.0 23 7666.0 24 7525.0 25 7932.5 26 8340.0 27 9240.0 28 10140.0 29 11706.0 30 13272.0 31 15254.5 32 17237.0 33 19553.5 34 21870.0 35 25732.5 36 29595.0 37 32198.5 38 34802.0 39 38427.0 40 42052.0 41 46282.0 42 50512.0 43 55694.5 44 60877.0 45 64613.0 46 68349.0 47 77356.0 48 86363.0 49 99610.0 50 112857.0 51 111814.5 52 110772.0 53 101416.0 54 92060.0 55 84997.5 56 77935.0 57 76811.5 58 75688.0 59 74105.0 60 72522.0 61 68681.5 62 64841.0 63 60420.0 64 55999.0 65 48938.5 66 41878.0 67 35998.0 68 30118.0 69 27213.0 70 24308.0 71 21436.0 72 18564.0 73 15306.5 74 12049.0 75 9603.5 76 7158.0 77 5369.0 78 3580.0 79 2715.5 80 1851.0 81 1344.0 82 837.0 83 561.0 84 285.0 85 214.0 86 143.0 87 90.0 88 37.0 89 27.0 90 17.0 91 11.5 92 6.0 93 4.5 94 3.0 95 3.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1403545.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.75262876539435 #Duplication Level Percentage of deduplicated Percentage of total 1 71.66192228517541 25.621021040764163 2 7.929228123381986 5.669814989828013 3 4.034691799963825 4.32752514320662 4 2.753023637528334 3.937113283796244 5 2.0959734050143477 3.746827952580875 6 1.7003795983876426 3.6475824324842234 7 1.4040690749969693 3.513941227953609 8 1.1626512954760213 3.32542721206072 9 0.9627823689005287 3.09798005554508 >10 6.183177134793453 35.95992310603419 >50 0.07336958490450193 1.7298014535387392 >100 0.03413979644149629 2.289492196312758 >500 0.0037933045945015157 0.9510573791831897 >1k 5.989428307107657E-4 0.40614804019456235 >5k 0.0 0.0 >10k+ 1.996476102369219E-4 1.7763444865170261 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24886 1.773081732327784 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 2461 0.17534172399174947 No Hit TCTGGGAACATGGTCAAGCGAGACACGACCAAAGTGAAACACGTGAGGGC 1808 0.12881667491957866 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 1421 0.10124363664862901 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.039756473786020395 0.0 2 0.0 0.0 0.0 0.1527560569842791 0.0 3 0.0 0.0 0.0 0.34669355097271554 0.0 4 0.0 0.0 0.0 0.47258905129511347 0.0 5 0.0 0.0 0.0 0.7191076880328027 0.0 6 0.0 0.0 0.0 1.338040461830579 0.0 7 0.0 0.0 0.0 1.7222817936012027 0.0 8 0.0 0.0 0.0 2.7528864411187386 0.0 9 0.0 0.0 0.0 3.4296727215728744 0.0 10 0.0 0.0 0.0 4.289068038431258 0.0 11 0.0 0.0 0.0 4.718409456055916 0.0 12 0.0 0.0 0.0 5.162926731953731 0.0 13 0.0 0.0 0.0 5.464163956267879 0.0 14 0.0 0.0 0.0 5.642640599339529 0.0 15 0.0 0.0 0.0 5.763406232076634 0.0 16 0.0 0.0 0.0 5.915022318486404 0.0 17 0.0 0.0 0.0 6.059869829610023 0.0 18 0.0 0.0 0.0 6.315365734621975 0.0 19 7.12481609068466E-5 0.0 0.0 6.429434040233836 0.0 20 7.12481609068466E-5 0.0 0.0 6.5764902443455675 0.0 21 7.12481609068466E-5 0.0 0.0 6.704950678460612 0.0 22 7.12481609068466E-5 0.0 0.0 6.843029614298081 0.0 23 7.12481609068466E-5 0.0 0.0 6.984955950824519 0.0 24 7.12481609068466E-5 0.0 0.0 7.1114926845950786 0.0 25 7.12481609068466E-5 0.0 0.0 7.22285356009248 0.0 26 7.12481609068466E-5 0.0 0.0 7.335568150647111 0.0 27 7.12481609068466E-5 7.12481609068466E-5 0.0 7.500721387629182 0.0 28 7.12481609068466E-5 7.12481609068466E-5 0.0 7.625833158181605 0.0 29 7.12481609068466E-5 7.12481609068466E-5 0.0 7.74681253540143 0.0 30 7.12481609068466E-5 7.12481609068466E-5 0.0 7.9243629523812915 0.0 31 7.12481609068466E-5 7.12481609068466E-5 0.0 8.053892108909938 0.0 32 7.12481609068466E-5 7.12481609068466E-5 0.0 8.218617856926569 0.0 33 7.12481609068466E-5 7.12481609068466E-5 0.0 8.352920640235974 0.0 34 7.12481609068466E-5 7.12481609068466E-5 0.0 8.478388651592931 0.0 35 7.12481609068466E-5 7.12481609068466E-5 0.0 8.62031498811937 0.0 36 7.12481609068466E-5 7.12481609068466E-5 0.0 8.74884667039532 0.0 37 7.12481609068466E-5 7.12481609068466E-5 0.0 8.88307820554382 0.0 38 7.12481609068466E-5 7.12481609068466E-5 0.0 9.028210709311066 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 14110 0.0 42.95535 1 CGCATCG 100 0.0 41.800003 21 CGTTTAT 105 0.0 39.809525 39 GTTTACG 50 1.3478711E-9 39.600002 1 CGGTCTA 315 0.0 39.11111 31 GTTTTTT 16085 0.0 38.378613 2 TCACGAC 325 0.0 37.907692 25 TATACTA 1335 0.0 37.737827 44 TAAGGGA 1280 0.0 37.29688 4 TAGCCGT 95 0.0 37.05263 44 TACGGGA 430 0.0 36.837208 4 CGGTAAT 30 1.3012422E-4 36.666664 6 TAGGGAC 1190 0.0 36.420166 5 CGAGGGT 145 0.0 36.41379 4 ATGGGAC 890 0.0 36.33708 5 CATATGC 730 0.0 36.164383 33 GGCGATA 505 0.0 36.158417 8 ACGTTAG 55 3.425157E-9 36.0 1 GTACGAG 165 0.0 36.0 1 ATTGGGA 1040 0.0 35.961536 4 >>END_MODULE