##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547233_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1774701 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.31100281117777 31.0 31.0 33.0 30.0 34.0 2 31.708139004823913 31.0 31.0 34.0 30.0 34.0 3 31.788368294152086 31.0 31.0 34.0 30.0 34.0 4 35.51929648994394 37.0 35.0 37.0 33.0 37.0 5 35.42260752656363 37.0 35.0 37.0 33.0 37.0 6 35.44893590525953 37.0 35.0 37.0 33.0 37.0 7 35.93129941325328 37.0 35.0 37.0 35.0 37.0 8 35.91064410286578 37.0 35.0 37.0 35.0 37.0 9 37.61178981698889 39.0 37.0 39.0 35.0 39.0 10 37.007548877247494 39.0 37.0 39.0 33.0 39.0 11 36.81276057206256 39.0 37.0 39.0 32.0 39.0 12 36.579113890170795 39.0 35.0 39.0 32.0 39.0 13 36.54470245973829 39.0 35.0 39.0 32.0 39.0 14 37.635079937409174 40.0 36.0 41.0 32.0 41.0 15 37.7218100401138 40.0 36.0 41.0 32.0 41.0 16 37.7120827677451 40.0 36.0 41.0 32.0 41.0 17 37.587382888723226 40.0 36.0 41.0 32.0 41.0 18 37.44359134299243 39.0 36.0 41.0 32.0 41.0 19 37.31068670159086 39.0 36.0 41.0 32.0 41.0 20 37.03829152065616 39.0 35.0 41.0 32.0 41.0 21 36.95237394918919 39.0 35.0 41.0 31.0 41.0 22 36.87463860109393 38.0 35.0 41.0 31.0 41.0 23 36.7239923795614 38.0 35.0 41.0 31.0 41.0 24 36.65782517731156 38.0 35.0 41.0 31.0 41.0 25 36.47823154435592 38.0 35.0 40.0 31.0 41.0 26 36.35891567086512 38.0 35.0 40.0 30.0 41.0 27 36.25778370553687 38.0 35.0 40.0 30.0 41.0 28 36.27489926472121 38.0 35.0 40.0 30.0 41.0 29 36.122216643817744 38.0 35.0 40.0 30.0 41.0 30 36.03793822170608 38.0 35.0 40.0 30.0 41.0 31 35.85028407602182 38.0 35.0 40.0 29.0 41.0 32 35.43438303128245 38.0 34.0 40.0 26.0 41.0 33 35.154241756780436 38.0 34.0 40.0 24.0 41.0 34 34.819103048907955 38.0 34.0 40.0 23.0 41.0 35 34.47671523259411 38.0 34.0 40.0 21.0 41.0 36 34.31683027169084 38.0 33.0 40.0 21.0 41.0 37 34.24653730403037 38.0 33.0 40.0 20.0 41.0 38 34.15597895082045 38.0 33.0 40.0 20.0 41.0 39 33.99767566480213 37.0 33.0 40.0 18.0 41.0 40 33.88939939741962 37.0 33.0 40.0 18.0 41.0 41 33.83589517332779 37.0 33.0 40.0 18.0 41.0 42 33.62474692920103 37.0 33.0 40.0 18.0 41.0 43 33.632324543683694 37.0 33.0 40.0 18.0 41.0 44 33.368001144981605 36.0 33.0 40.0 17.0 41.0 45 33.26143164397834 36.0 32.0 40.0 18.0 41.0 46 33.239701786385424 36.0 32.0 40.0 18.0 41.0 47 33.11851517523233 36.0 32.0 40.0 18.0 41.0 48 33.069129954848734 35.0 32.0 40.0 18.0 41.0 49 33.030156065726004 35.0 32.0 40.0 18.0 41.0 50 32.52858087080584 35.0 31.0 39.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 1.0 12 7.0 13 8.0 14 29.0 15 54.0 16 169.0 17 383.0 18 993.0 19 1923.0 20 3530.0 21 5714.0 22 8412.0 23 12601.0 24 18349.0 25 26866.0 26 39533.0 27 48857.0 28 49301.0 29 47309.0 30 49376.0 31 56261.0 32 66050.0 33 81191.0 34 118848.0 35 156749.0 36 148724.0 37 182869.0 38 257098.0 39 393494.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.7473749099144 21.37706577051571 24.060560060539775 20.814999259030113 2 39.52062910879072 22.888644340652313 25.00984672911099 12.58087982144598 3 28.380217287306426 23.930397289458902 34.951014283532835 12.738371139701844 4 24.42631181252504 26.037005670250934 35.2575447920523 14.279137725171735 5 21.990915652833916 29.486037366294376 33.845926722304206 14.6771202585675 6 18.613219917045182 38.75216163173402 32.252193468082794 10.382424983138003 7 79.67629476740026 3.55231670010892 14.57327177930254 2.1981167531882835 8 78.84184434448395 3.5852799992787516 14.128858889469267 3.4440167667680357 9 73.23081465553915 5.159066231438422 16.883069317028614 4.727049795993804 10 34.4960644074692 28.747715812410092 22.1188808706368 14.637338909483907 11 28.609213608376848 24.845537360941364 30.723879684521506 15.821369346160283 12 25.326632486261065 20.828184578698046 34.50902433705734 19.336158597983548 13 23.500522059772322 22.197316618405015 36.08264152665717 18.219519795165496 14 20.144914551803375 25.535456395189946 35.525758987006824 18.79387006599985 15 19.815732340264642 21.90633802539132 38.92295096469772 19.35497866964632 16 22.565265923668267 21.145364768487763 36.8819874446456 19.407381863198363 17 21.473420029627526 21.935075260565018 34.899230912700226 21.69227379710723 18 23.43059478751632 21.698246634221764 34.40703532595068 20.464123252311232 19 25.130655811880427 25.468064761331625 30.43932470878193 18.96195471800602 20 26.38754359185012 24.091945629151052 29.684155246433065 19.836355532565765 21 24.637671359851606 26.112173261862136 30.97327380781326 18.276881570472998 22 23.17804520310745 22.005735050580352 31.60487315891522 23.211346587396974 23 22.110541437684432 25.714190728466374 30.862494583594646 21.312773250254548 24 21.948373275272846 24.550276356411587 33.38224298064857 20.119107387666993 25 23.10744176061207 24.43634167107586 31.41994059844447 21.0362759698676 26 20.404451228685847 24.51134022012722 32.56723245211447 22.516976099072465 27 22.09589108249784 22.320266906932492 32.107042256695635 23.476799753874033 28 21.596088580555257 24.99728123216249 33.04212935023984 20.36450083704241 29 22.283302933846322 24.15905552540963 31.864635225877485 21.69300631486656 30 23.394081594589736 23.527174436707927 32.538213479341024 20.540530489361306 31 25.094255313993735 22.973785443294393 29.142261147089005 22.789698095622867 32 24.710979483304513 24.685679446847665 28.400840479607552 22.20250059024027 33 23.39351811939025 24.01762325033907 27.364496892716012 25.224361737554663 34 21.883179194692516 26.002408293002592 29.11870788375056 22.995704628554332 35 22.0021851568236 25.16874673536556 29.012830893767454 23.81623721404338 36 24.702921787951887 27.344944303293907 25.733912360448326 22.218221548305884 37 22.96877051401898 27.117074932622454 27.11279252110637 22.801362032252193 38 23.348552798471406 28.30566951841465 26.73408083953297 21.611696843580972 39 22.87974143250046 26.846550489350037 26.394474336803775 23.879233741345725 40 23.444061844783995 25.76456541130027 29.05221781021141 21.739154933704324 41 21.59890595655268 25.862102968331 28.75166013880648 23.787330936309832 42 23.09087558974723 27.09487400976277 27.05030312148356 22.763947279006437 43 22.32314063044986 25.169873685764532 28.541991017078374 23.964994666707238 44 23.327535173530638 25.90599768637083 28.81414953842929 21.95231760166924 45 22.259862365547775 25.122654464047745 29.297554912066875 23.3199282583376 46 24.268876841789126 25.260536845361557 28.07368677878696 22.39689953406236 47 22.581099576773777 25.698751508000502 29.104226571123814 22.615922344101907 48 22.935525477249406 25.27005957623284 28.546498818674245 23.247916127843506 49 23.319759215777754 24.311306524310293 28.67412595135744 23.69480830855451 50 21.808124298121204 23.812405582686885 30.91224944370911 23.4672206754828 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1334.0 1 1921.0 2 2508.0 3 26105.0 4 49702.0 5 34009.0 6 18316.0 7 18286.5 8 18257.0 9 18503.5 10 18750.0 11 18559.0 12 18368.0 13 17613.5 14 16859.0 15 16007.5 16 15156.0 17 14184.0 18 13212.0 19 12375.5 20 11539.0 21 11231.5 22 10924.0 23 10816.5 24 10709.0 25 11109.0 26 11509.0 27 12527.5 28 13546.0 29 15603.5 30 17661.0 31 19825.5 32 21990.0 33 24790.5 34 27591.0 35 32292.5 36 36994.0 37 40479.5 38 43965.0 39 49168.0 40 54371.0 41 62977.5 42 71584.0 43 80445.0 44 89306.0 45 101931.0 46 114556.0 47 130659.0 48 146762.0 49 151320.5 50 155879.0 51 141795.0 52 127711.0 53 115236.0 54 102761.0 55 97500.0 56 92239.0 57 89891.5 58 87544.0 59 84469.0 60 81394.0 61 76953.0 62 72512.0 63 65901.0 64 59290.0 65 50513.5 66 41737.0 67 35976.0 68 30215.0 69 26976.0 70 23737.0 71 21099.5 72 18462.0 73 14979.0 74 11496.0 75 9189.5 76 6883.0 77 5479.5 78 4076.0 79 2927.0 80 1778.0 81 1338.5 82 899.0 83 651.0 84 403.0 85 260.0 86 117.0 87 91.5 88 66.0 89 44.5 90 23.0 91 14.5 92 6.0 93 4.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1774701.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.76431233755752 #Duplication Level Percentage of deduplicated Percentage of total 1 72.84754514993483 26.053423577665928 2 7.759297952755519 5.550119110050381 3 3.756041026904825 4.029966733167134 4 2.5379884487154376 3.63077646355888 5 1.9322606504609319 3.4552986710328417 6 1.5531024130570537 3.3327383875672045 7 1.2358660189490045 3.093992881634619 8 1.0859384143550443 3.1070272504276613 9 0.9016847779502176 2.9023322425769504 >10 6.263477555397769 37.29014585325138 >50 0.08858203468282615 2.101701364129305 >100 0.033934286876095385 2.3265154582114156 >500 0.0031713110818145864 0.8168491118770342 >1k 9.51393324544376E-4 0.5499724164803859 >5k 0.0 0.0 >10k+ 1.5856555409072935E-4 1.7591404783688975 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31020 1.747900068800322 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 2695 0.15185656626102087 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.049585817554619056 0.0 2 0.0 0.0 0.0 0.1693242974450344 0.0 3 0.0 0.0 0.0 0.35420051039583567 0.0 4 0.0 0.0 0.0 0.5544032487726102 0.0 5 0.0 0.0 0.0 0.9872085494965067 0.0 6 0.0 0.0 0.0 1.9379602535863787 0.0 7 0.0 0.0 0.0 2.571757157966328 0.0 8 0.0 0.0 0.0 4.170167256343463 0.0 9 0.0 0.0 0.0 5.185662260854082 0.0 10 0.0 0.0 0.0 6.491177950539274 0.0 11 0.0 0.0 0.0 7.006757758067415 0.0 12 0.0 0.0 0.0 7.557554765563326 0.0 13 0.0 0.0 0.0 7.963707689351614 0.0 14 0.0 0.0 0.0 8.191295322423327 0.0 15 0.0 0.0 0.0 8.341348768045998 0.0 16 0.0 0.0 0.0 8.540030123384165 0.0 17 0.0 0.0 0.0 8.718370024020947 0.0 18 0.0 0.0 0.0 9.066710392342147 0.0 19 0.0 0.0 0.0 9.217214618124405 0.0 20 0.0 0.0 0.0 9.392004625004438 0.0 21 0.0 0.0 0.0 9.537437573991337 0.0 22 0.0 0.0 0.0 9.694647154647459 0.0 23 0.0 0.0 0.0 9.862506416573835 0.0 24 0.0 0.0 0.0 10.018363656751193 0.0 25 0.0 0.0 0.0 10.152527101748408 0.0 26 0.0 0.0 0.0 10.288550014903919 0.0 27 0.0 0.0 0.0 10.461029773466066 0.0 28 0.0 0.0 0.0 10.606237332373171 0.0 29 0.0 0.0 0.0 10.764404820868418 0.0 30 0.0 0.0 0.0 10.972101779398333 0.0 31 0.0 0.0 0.0 11.130832743093062 0.0 32 0.0 0.0 0.0 11.32765463027293 0.0 33 0.0 0.0 0.0 11.500923254114355 0.0 34 0.0 0.0 0.0 11.681178970429386 0.0 35 0.0 0.0 0.0 11.86306876482292 0.0 36 0.0 0.0 0.0 12.042930048498311 0.0 37 0.0 0.0 0.0 12.2210445590553 5.634751994843075E-5 38 0.0 0.0 0.0 12.432460453901813 5.634751994843075E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 17995 0.0 42.92415 1 ACGGGTA 135 0.0 40.74074 5 TAATGCG 50 1.3496901E-9 39.6 1 GTTTTTT 20590 0.0 38.134045 2 AGGGCGA 2015 0.0 37.33995 6 CGGTCTA 155 0.0 36.903225 31 TACGGGA 550 0.0 36.4 4 CGCCGTT 170 0.0 36.23529 26 TATACTA 700 0.0 36.14286 44 GCGATAT 220 0.0 36.0 9 TGGGCGA 1290 0.0 35.813953 6 ATAGGGC 1105 0.0 35.43891 4 GTAGGGA 1845 0.0 35.41463 4 GGCGATA 870 0.0 35.402298 8 GGGCGAT 4215 0.0 35.33571 7 GTACGGG 430 0.0 35.302326 3 TAGGGAC 1250 0.0 35.2 5 AGTACGG 150 0.0 35.2 2 ACGGGAC 345 0.0 35.072464 5 GTTGATC 1170 0.0 34.97436 16 >>END_MODULE