##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547232_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2861945 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.307463630503033 31.0 31.0 33.0 30.0 34.0 2 31.686127790715755 31.0 31.0 34.0 30.0 34.0 3 31.8347546860614 31.0 31.0 34.0 30.0 34.0 4 35.51460073481496 37.0 35.0 37.0 33.0 37.0 5 35.3887607903017 37.0 35.0 37.0 33.0 37.0 6 35.421616068792375 37.0 35.0 37.0 33.0 37.0 7 35.93624545545075 37.0 35.0 37.0 35.0 37.0 8 35.92544091518181 37.0 35.0 37.0 35.0 37.0 9 37.6170600762768 39.0 37.0 39.0 35.0 39.0 10 36.96294163584555 39.0 37.0 39.0 32.0 39.0 11 36.69999807823002 39.0 35.0 39.0 32.0 39.0 12 36.05442662245431 38.0 35.0 39.0 32.0 39.0 13 35.75806138832158 38.0 35.0 39.0 31.0 39.0 14 36.75338554724147 39.0 35.0 41.0 31.0 41.0 15 36.99791156014528 39.0 35.0 41.0 32.0 41.0 16 37.122457629339486 39.0 35.0 41.0 32.0 41.0 17 37.07716780021978 38.0 35.0 41.0 32.0 41.0 18 37.05002681742661 38.0 35.0 41.0 32.0 41.0 19 37.020966859950136 38.0 35.0 41.0 32.0 41.0 20 36.85083815377305 38.0 35.0 41.0 32.0 41.0 21 36.71817313051089 38.0 35.0 41.0 31.0 41.0 22 36.634920307692845 38.0 35.0 41.0 31.0 41.0 23 36.54648988712222 38.0 35.0 40.0 31.0 41.0 24 36.48754745461566 38.0 35.0 40.0 31.0 41.0 25 36.32928480456473 38.0 35.0 40.0 31.0 41.0 26 36.20735234255026 38.0 35.0 40.0 31.0 41.0 27 36.1108131008807 38.0 35.0 40.0 30.0 41.0 28 36.188162945129974 38.0 35.0 40.0 30.0 41.0 29 36.15362803967232 38.0 35.0 40.0 30.0 41.0 30 36.13145605523516 38.0 35.0 40.0 30.0 41.0 31 36.03572500519751 38.0 35.0 40.0 30.0 41.0 32 35.8196988411727 38.0 35.0 40.0 30.0 41.0 33 35.77410572180807 38.0 35.0 40.0 30.0 41.0 34 35.722860851623636 38.0 35.0 40.0 30.0 41.0 35 35.54614326969945 38.0 35.0 40.0 29.0 41.0 36 35.410689234069835 38.0 34.0 40.0 28.0 41.0 37 35.35878502207415 37.0 34.0 40.0 28.0 41.0 38 35.35551032601954 37.0 34.0 40.0 28.0 41.0 39 35.27478725132733 37.0 34.0 40.0 27.0 41.0 40 35.16040559829067 37.0 34.0 40.0 27.0 41.0 41 35.184474893822205 37.0 34.0 40.0 27.0 41.0 42 34.968200996175675 37.0 34.0 40.0 26.0 41.0 43 34.97931791142038 37.0 34.0 40.0 27.0 41.0 44 34.63005508491603 36.0 34.0 40.0 26.0 41.0 45 34.55979412602269 36.0 34.0 40.0 25.0 41.0 46 34.57924348651005 36.0 34.0 40.0 26.0 41.0 47 34.48400510841403 36.0 33.0 40.0 25.0 41.0 48 34.49150525254678 36.0 34.0 40.0 26.0 41.0 49 34.51754348878123 36.0 34.0 40.0 26.0 41.0 50 33.95161227766432 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 6.0 13 11.0 14 24.0 15 62.0 16 213.0 17 538.0 18 1145.0 19 2353.0 20 4235.0 21 7006.0 22 10205.0 23 14646.0 24 20986.0 25 28886.0 26 38869.0 27 47807.0 28 54842.0 29 62417.0 30 74779.0 31 91147.0 32 114266.0 33 146054.0 34 242977.0 35 396010.0 36 210997.0 37 257288.0 38 373390.0 39 660781.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.80264121078497 24.19955659525253 28.5132313863474 13.484570807615102 2 30.551635338904138 26.167658707627155 29.625516912449402 13.655189041019305 3 29.278969372227632 25.489553433067375 31.7499462777936 13.481530916911403 4 25.636132071021628 28.214029270303936 30.75922143856713 15.390617220107305 5 22.827762238617446 31.921298277919384 29.976082699003648 15.27485678445952 6 19.923303906958377 41.50551460632542 27.145315510954966 11.425865975761239 7 85.71268839897343 4.40287985967585 7.363069520902743 2.521362220447982 8 85.26128210011024 4.065731521744827 6.729619192542134 3.9433671856027983 9 79.55278665383157 5.7963028639613965 10.34988443174135 4.30102605046568 10 45.61174306284712 26.08292612192058 14.839837942378347 13.465492872853952 11 40.07197902126002 22.39581822851243 22.521711633172544 15.010491117055011 12 36.54675404314199 20.529150630078497 25.968703102260875 16.95539222451864 13 23.443706989477437 33.895864525698435 26.844750685285707 15.815677799538424 14 17.563719777983156 36.46289498924683 27.522786077300577 18.450599155469444 15 15.424719902024671 23.170710827776215 44.2604592331439 17.144110037055217 16 17.141279793986257 19.884134740534844 42.00985693295993 20.96472853251897 17 17.361444751733522 21.545347656925625 29.320863957902755 31.772343633438098 18 21.599436746688006 23.239055956700774 32.61156311529397 22.54994418131725 19 27.130849824158048 27.431030295830283 24.28393976823454 21.15418011177713 20 29.003597203999377 24.318985864508228 24.25539274863773 22.422024182854667 21 23.283815726717318 29.95207804482616 25.763877363121935 21.000228865334588 22 22.356823768451175 25.832641787315968 24.226775846496 27.583758597736853 23 19.99147432952066 30.534653880490364 24.772174168266687 24.70169762172229 24 20.229983455307494 24.3686024713962 35.05151217091873 20.349901902377578 25 19.291565700948134 25.797840279949476 31.010728717707714 23.899865301394684 26 18.01882985172671 31.071910885778724 27.385676524181978 23.52358273831258 27 20.385437176465658 29.692394507930796 26.98909308180276 22.93307523380079 28 17.943321761948607 28.19281991792295 33.8232565615342 20.040601758594242 29 18.909762416817934 24.69942643901263 31.67069947186267 24.72011167230677 30 21.034331547251956 27.922409410383498 29.049894390004 21.993364652360544 31 26.540342319646253 26.09756651507978 23.904198019179265 23.4578931460947 32 27.20254931523841 25.886940524713086 23.56725932888298 23.34325083116552 33 24.531184212135454 28.14131648232234 23.30865897143376 24.018840334108447 34 18.961405617508373 26.095609803822228 27.691133127995123 27.25185145067428 35 19.281048377938777 25.207647246889792 29.094164982206156 26.41713939296527 36 25.28755793699739 25.421557716867376 26.247359750100017 23.043524596035216 37 20.04441035729198 29.09954593816443 28.39222975983116 22.463813944712424 38 19.910375636149542 28.84835313047595 28.00941317879973 23.231858054574772 39 20.048044249627438 27.625862831046717 27.240775067305627 25.085317852020218 40 23.311803685954832 23.351462030192753 28.572212254253664 24.76452202959875 41 18.192208445654963 22.731953269542217 28.516480924685833 30.559357360116984 42 21.962616332598984 25.64053467135113 24.925671178167295 27.47117781788259 43 21.604957467736103 25.49336203176511 26.612286399633817 26.28939410086497 44 21.00676288328392 28.066297570358618 27.27854658283091 23.64839296352655 45 19.103406948770854 29.89652142162061 26.111193611337747 24.88887801827079 46 22.544283695179328 29.071173624929898 26.59572423648952 21.788818443401254 47 21.350200650257083 25.06830145233399 28.36197061788399 25.21952727952494 48 22.28348203756536 22.560426563054147 29.681388007107056 25.474703392273433 49 21.415366123388115 21.91481667187874 30.175387717094495 26.494429487638648 50 19.38272748078667 27.05911539180522 28.98595186140894 24.572205265999173 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3502.0 1 3711.0 2 3920.0 3 14028.0 4 24136.0 5 16767.5 6 9399.0 7 9883.5 8 10368.0 9 11111.5 10 11855.0 11 12343.5 12 12832.0 13 12480.0 14 12128.0 15 11713.5 16 11299.0 17 10656.5 18 10014.0 19 9669.0 20 9324.0 21 9416.5 22 9509.0 23 10550.0 24 11591.0 25 11979.5 26 12368.0 27 14622.0 28 16876.0 29 21927.0 30 26978.0 31 31626.0 32 36274.0 33 42841.0 34 49408.0 35 58171.5 36 66935.0 37 70905.0 38 74875.0 39 93724.0 40 112573.0 41 150410.0 42 188247.0 43 215233.5 44 242220.0 45 262695.0 46 283170.0 47 287977.5 48 292785.0 49 286160.5 50 279536.0 51 249867.0 52 220198.0 53 191373.5 54 162549.0 55 146673.5 56 130798.0 57 127271.5 58 123745.0 59 117192.0 60 110639.0 61 101767.5 62 92896.0 63 79719.0 64 66542.0 65 54853.5 66 43165.0 67 36408.0 68 29651.0 69 26630.0 70 23609.0 71 19538.0 72 15467.0 73 12206.0 74 8945.0 75 7169.5 76 5394.0 77 4220.5 78 3047.0 79 2366.0 80 1685.0 81 1299.5 82 914.0 83 642.5 84 371.0 85 259.0 86 147.0 87 87.5 88 28.0 89 21.5 90 15.0 91 14.5 92 14.0 93 8.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2861945.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.608699008645036 #Duplication Level Percentage of deduplicated Percentage of total 1 79.17684767940514 17.109086699576007 2 8.369745075884975 3.6171860424777464 3 2.8718899176310404 1.8617341444815458 4 1.4581951398153574 1.260387994885565 5 0.8814321703576643 0.9523301232897751 6 0.5833086877133008 0.7562725117154664 7 0.44178999248497486 0.6682554880847561 8 0.35218744095912885 0.6088249925048608 9 0.29146467406286997 0.5668355172129648 >10 3.2434811257464986 16.375227218280347 >50 1.2728711070864853 19.99901053124333 >100 1.047504147919805 33.721096989056 >500 0.006351417480331397 0.903957596667632 >1k 0.002768566593990609 1.0992690250752062 >5k 0.0 0.0 >10k+ 1.6285685847003582E-4 0.5005251254488158 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14223 0.4969697181462257 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4985 0.17418224319475042 No Hit GCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG 2901 0.10136463139578154 TruSeq Adapter, Index 27 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09647285325189688 0.0 2 0.0 0.0 0.0 0.38529741137583007 0.0 3 3.4941272456319045E-5 0.0 0.0 0.6058467231201159 0.0 4 3.4941272456319045E-5 0.0 0.0 0.9243713628319202 0.0 5 3.4941272456319045E-5 0.0 0.0 1.5445090663866705 0.0 6 3.4941272456319045E-5 0.0 0.0 2.586632517396386 0.0 7 3.4941272456319045E-5 0.0 0.0 3.2567012992912163 0.0 8 3.4941272456319045E-5 0.0 0.0 5.326237925606537 0.0 9 3.4941272456319045E-5 0.0 0.0 6.420808226573187 0.0 10 3.4941272456319045E-5 0.0 0.0 7.936525684455851 0.0 11 3.4941272456319045E-5 0.0 0.0 8.728120211953758 0.0 12 6.988254491263809E-5 0.0 0.0 9.540225266383526 0.0 13 6.988254491263809E-5 0.0 0.0 9.92538291266953 0.0 14 1.0482381736895713E-4 0.0 0.0 10.084190995983501 0.0 15 1.0482381736895713E-4 0.0 0.0 10.247087208174861 0.0 16 1.0482381736895713E-4 0.0 0.0 10.583396955566931 0.0 17 1.0482381736895713E-4 0.0 0.0 10.924668363647799 0.0 18 1.0482381736895713E-4 0.0 0.0 11.531633207486516 0.0 19 1.0482381736895713E-4 0.0 0.0 11.73160210975403 0.0 20 1.3976508982527618E-4 0.0 0.0 12.00044026003295 0.0 21 1.3976508982527618E-4 0.0 0.0 12.246147287945785 0.0 22 1.3976508982527618E-4 0.0 0.0 12.488709601337552 0.0 23 1.3976508982527618E-4 0.0 0.0 12.780154754895708 0.0 24 1.3976508982527618E-4 0.0 0.0 12.994903815412245 0.0 25 1.7470636228159522E-4 0.0 0.0 13.171007828592094 0.0 26 1.7470636228159522E-4 0.0 0.0 13.352003619915827 0.0 27 1.7470636228159522E-4 0.0 0.0 13.542503437347678 0.0 28 2.0964763473791425E-4 0.0 0.0 13.721472634868944 0.0 29 2.0964763473791425E-4 0.0 0.0 13.9111688030343 0.0 30 2.0964763473791425E-4 0.0 0.0 14.19195686849328 0.0 31 2.0964763473791425E-4 0.0 0.0 14.40876746408474 0.0 32 2.0964763473791425E-4 0.0 0.0 14.612684730139817 0.0 33 2.0964763473791425E-4 0.0 0.0 14.803988196838164 0.0 34 2.0964763473791425E-4 0.0 0.0 14.987185288326645 0.0 35 2.0964763473791425E-4 0.0 0.0 15.232962198784394 0.0 36 2.0964763473791425E-4 0.0 0.0 15.430590035797334 0.0 37 2.0964763473791425E-4 0.0 0.0 15.63527600984645 0.0 38 2.0964763473791425E-4 0.0 0.0 15.844713996949627 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCATA 20 7.858449E-4 44.000004 6 CTATCGT 75 0.0 44.0 13 CGTTACA 30 2.5290447E-6 44.0 38 CGACTCA 25 4.444508E-5 44.0 18 TACGTAA 25 4.444508E-5 44.0 29 GTACGAC 25 4.444508E-5 44.0 36 CGGTCTA 525 0.0 41.485714 31 CGTTTTT 9060 0.0 41.42605 1 TTACGTC 60 3.6379788E-12 40.333332 15 ACGGTCT 540 0.0 39.925926 30 CGACGGT 560 0.0 39.285713 28 TCTAGCG 45 2.3530447E-8 39.11111 1 CGCATCG 215 0.0 38.883724 21 GCGTAAG 275 0.0 38.4 1 ACGATTG 75 0.0 38.13333 1 ATATCGA 75 0.0 38.13333 14 TACGGGA 650 0.0 37.907692 4 ACGGGTA 325 0.0 37.907692 5 GTATCGC 35 7.294011E-6 37.714287 31 TATAGCG 170 0.0 37.52941 1 >>END_MODULE