##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547229_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1681116 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33254754579696 31.0 31.0 33.0 30.0 34.0 2 31.713311871399714 31.0 31.0 34.0 30.0 34.0 3 31.839432852938167 31.0 31.0 34.0 30.0 34.0 4 35.52884393462438 37.0 35.0 37.0 33.0 37.0 5 35.39621061247409 37.0 35.0 37.0 33.0 37.0 6 35.43640474541911 37.0 35.0 37.0 33.0 37.0 7 35.95806357205571 37.0 35.0 37.0 35.0 37.0 8 35.95899509611473 37.0 35.0 37.0 35.0 37.0 9 37.65820978445271 39.0 37.0 39.0 35.0 39.0 10 36.98829824949617 39.0 37.0 39.0 32.0 39.0 11 36.73896328391378 39.0 35.0 39.0 32.0 39.0 12 36.10477801650808 38.0 35.0 39.0 32.0 39.0 13 35.82773824054973 38.0 35.0 39.0 31.0 39.0 14 36.82656818446794 39.0 35.0 41.0 31.0 41.0 15 37.08249817383214 39.0 35.0 41.0 32.0 41.0 16 37.174438884645674 39.0 35.0 41.0 32.0 41.0 17 37.12010473994656 39.0 35.0 41.0 32.0 41.0 18 37.08478415528732 38.0 35.0 41.0 32.0 41.0 19 37.043917254966345 38.0 35.0 41.0 32.0 41.0 20 36.880791093535485 38.0 35.0 41.0 32.0 41.0 21 36.756012077691246 38.0 35.0 41.0 31.0 41.0 22 36.688753185383995 38.0 35.0 41.0 31.0 41.0 23 36.59731392717695 38.0 35.0 40.0 31.0 41.0 24 36.54525684128876 38.0 35.0 40.0 31.0 41.0 25 36.37757061380654 38.0 35.0 40.0 31.0 41.0 26 36.254446451048 38.0 35.0 40.0 31.0 41.0 27 36.14285153433791 38.0 35.0 40.0 30.0 41.0 28 36.235912929268416 38.0 35.0 40.0 31.0 41.0 29 36.18976263386941 38.0 35.0 40.0 30.0 41.0 30 36.18312180718047 38.0 35.0 40.0 30.0 41.0 31 36.0529933686908 38.0 35.0 40.0 30.0 41.0 32 35.81315328626936 38.0 35.0 40.0 30.0 41.0 33 35.711450012967575 38.0 35.0 40.0 29.0 41.0 34 35.62910114471577 38.0 35.0 40.0 29.0 41.0 35 35.46377882311512 38.0 35.0 40.0 28.0 41.0 36 35.25582708153394 37.0 34.0 40.0 27.0 41.0 37 35.19852050661584 37.0 34.0 40.0 27.0 41.0 38 35.16011506642016 37.0 34.0 40.0 27.0 41.0 39 35.021696301742416 37.0 34.0 40.0 26.0 41.0 40 34.901449989173855 37.0 34.0 40.0 26.0 41.0 41 34.90704805617221 37.0 34.0 40.0 26.0 41.0 42 34.73639534690051 37.0 34.0 40.0 25.0 41.0 43 34.766284420587276 37.0 34.0 40.0 26.0 41.0 44 34.52845312280652 36.0 34.0 40.0 25.0 41.0 45 34.44353988659914 36.0 34.0 40.0 24.0 41.0 46 34.44513703991872 36.0 34.0 40.0 24.0 41.0 47 34.343495035440746 36.0 33.0 40.0 24.0 41.0 48 34.32444935388159 36.0 34.0 40.0 24.0 41.0 49 34.30867411885914 36.0 34.0 40.0 24.0 41.0 50 33.753149098574994 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 2.0 12 5.0 13 7.0 14 18.0 15 37.0 16 121.0 17 305.0 18 719.0 19 1301.0 20 2436.0 21 3954.0 22 6093.0 23 8903.0 24 12746.0 25 17977.0 26 24923.0 27 30155.0 28 33514.0 29 37111.0 30 43703.0 31 53132.0 32 65393.0 33 84993.0 34 140845.0 35 229490.0 36 124466.0 37 153244.0 38 223691.0 39 381831.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.11734585834648 23.711034812588778 28.934588689894092 14.237030639170648 2 31.78323209106332 25.531968049795495 29.404455135755057 13.280344723386131 3 28.391497076941747 25.782694353036913 32.27701122349677 13.548797346524571 4 25.50353455680631 28.505647438963166 31.171079211666537 14.819738792563989 5 22.50493124805189 32.055908099143664 30.480288094337332 14.958872558467112 6 19.52637414669779 41.15480430856645 27.934836144561114 11.383985400174645 7 85.94861984538842 4.212499315930608 7.637426566637877 2.201454272043095 8 86.00072808777026 3.4632946209541755 7.113429412366547 3.4225478789090102 9 80.61281910350029 5.35816683679175 10.121669176903914 3.9073448828040416 10 44.28671192231827 28.11096914192715 14.827293298023456 12.775025637731128 11 39.611186854446686 22.54460727278784 23.596646513387533 14.247559359377938 12 36.43466601947753 20.51262375707566 26.222045355585216 16.830664867861586 13 23.114109912700847 33.70356358514225 27.114785654291556 16.067540847865345 14 17.305171088729153 36.83767211780746 27.81699775625239 18.040159037210994 15 15.93893580216951 23.64691074262573 43.532153640795755 16.881999814409 16 17.177755728932446 20.420423099893167 41.62009046371577 20.781730707458618 17 17.65065587383619 21.201987251325903 29.961466073727216 31.185890801110688 18 22.07468134263192 23.012867642684977 33.09920314838477 21.81324786629834 19 26.568600858001474 27.205975078459787 25.10314576745448 21.122278296084268 20 29.477501849961573 23.956823919348814 25.09707836936892 21.468595861320694 21 23.07056740879273 29.352644314847993 26.177610587252754 21.399177689106523 22 22.741797710568456 25.496039535641803 24.979180496765245 26.7829822570245 23 20.197356993806494 30.74927607613038 24.748678853809018 24.30468807625411 24 20.83794336619246 24.693536912384392 34.34337666169378 20.12514305972937 25 19.638085652625996 26.25000297421475 31.28862017850047 22.823291194658786 26 18.96573466673329 30.87764318464639 27.305670756806787 22.850951391813535 27 20.296160407729154 29.44532084639014 27.310905374762957 22.947613371117757 28 18.23752792787648 27.78190202222809 34.226014147744706 19.754555902150713 29 19.255363698876224 24.321105741662087 32.929375486284115 23.49415507317758 30 21.814140130722688 27.9333490371872 29.40623966460375 20.84627116748636 31 27.911339848053316 25.545708921930434 23.911794308066785 22.631156921949465 32 30.166746375621905 25.77585365911692 24.206003630921362 19.851396334339807 33 27.297878314167495 25.876857991952967 23.989778218754683 22.83548547512486 34 21.415535870219546 25.856633331667773 28.57464922111264 24.15318157700004 35 22.932444875903865 24.619716902343445 28.654774566418972 23.793063655333718 36 28.740967309810866 26.183915922518135 25.332636177396445 19.742480590274557 37 24.155739401683167 29.863019565574294 26.569909512490515 19.411331520252023 38 23.772006214919138 30.621801232038713 25.081969358449985 20.524223194592164 39 23.563692213981664 28.83947330225874 26.109917459592317 21.48691702416728 40 25.715417615441172 25.366244804046833 26.430478325112606 22.48785925539939 41 20.24898936182869 23.685218628577683 27.74341568339127 28.32237632620236 42 23.41343488492168 25.984167660054393 24.584145293959487 26.01825216106444 43 22.314581504191263 25.84782965601422 26.67174662545595 25.165842214338568 44 22.759702483350345 28.13571460862903 27.251718501281292 21.852864406739332 45 19.99421812653023 30.63768353879209 25.065016334387398 24.30308200029028 46 22.930422409875344 29.595756628334986 26.162917966398513 21.310902995391157 47 23.404869146447954 25.77347428731866 27.109432067745477 23.71222449848791 48 23.227308526002965 23.434789746811045 28.727702312035575 24.61019941515041 49 21.9688587819044 23.156462730709837 29.94106296055715 24.933615526828607 50 20.875358987720062 27.698742977878982 28.189904801334354 23.23599323306661 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1655.0 1 1831.5 2 2008.0 3 9120.0 4 16232.0 5 11477.5 6 6723.0 7 6916.5 8 7110.0 9 7705.0 10 8300.0 11 8413.0 12 8526.0 13 8440.0 14 8354.0 15 7717.5 16 7081.0 17 6756.0 18 6431.0 19 6527.5 20 6624.0 21 6554.5 22 6485.0 23 6615.0 24 6745.0 25 7840.5 26 8936.0 27 9767.5 28 10599.0 29 13552.5 30 16506.0 31 19043.0 32 21580.0 33 25161.5 34 28743.0 35 35152.5 36 41562.0 37 44446.0 38 47330.0 39 56169.5 40 65009.0 41 84914.0 42 104819.0 43 119387.5 44 133956.0 45 139259.5 46 144563.0 47 144620.0 48 144677.0 49 156032.5 50 167388.0 51 160053.0 52 152718.0 53 131224.0 54 109730.0 55 96239.0 56 82748.0 57 76832.5 58 70917.0 59 68616.0 60 66315.0 61 60107.0 62 53899.0 63 47102.5 64 40306.0 65 33125.5 66 25945.0 67 21736.0 68 17527.0 69 15119.0 70 12711.0 71 10582.5 72 8454.0 73 6887.0 74 5320.0 75 4243.5 76 3167.0 77 2514.5 78 1862.0 79 1313.0 80 764.0 81 637.5 82 511.0 83 345.5 84 180.0 85 116.5 86 53.0 87 39.0 88 25.0 89 20.0 90 15.0 91 9.0 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1681116.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.64819483770598 #Duplication Level Percentage of deduplicated Percentage of total 1 78.49044470161694 20.13138218605258 2 7.598457145035697 3.897734186436693 3 2.676683555291441 2.0595630403499525 4 1.5383304258095456 1.5782159394373767 5 1.0195832435151986 1.3075234841469017 6 0.7437169111459682 1.1444997744701193 7 0.5796980351622454 1.0407745707013618 8 0.4677604484068571 0.9597768894489428 9 0.38771537080161633 0.8949779434703948 >10 4.749598393250295 28.778310225270808 >50 1.4258576968647334 25.711234574626 >100 0.3186675572668617 11.02780342625996 >500 0.0018594751107341586 0.3463644567850155 >1k 0.001394606333050619 0.5230043682228814 >5k 0.0 0.0 >10k+ 2.3243438884176982E-4 0.598834934321081 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10045 0.597519742837496 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2830 0.16834055472674103 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06947765650912846 0.0 2 0.0 0.0 0.0 0.26416975390157493 0.0 3 0.0 0.0 0.0 0.4463106650582113 0.0 4 0.0 0.0 0.0 0.6589075352325479 0.0 5 0.0 0.0 0.0 1.0916557810406897 0.0 6 0.0 0.0 0.0 1.9522745604705445 0.0 7 0.0 0.0 0.0 2.495128236243067 0.0 8 0.0 0.0 0.0 4.191025485451331 0.0 9 0.0 0.0 0.0 5.2339041446277355 0.0 10 0.0 0.0 0.0 6.62553922513378 0.0 11 0.0 0.0 0.0 7.311274177391685 0.0 12 0.0 0.0 0.0 8.010631033194615 0.0 13 0.0 0.0 0.0 8.38193200231275 0.0 14 0.0 0.0 0.0 8.548547512485754 0.0 15 0.0 0.0 0.0 8.704039459501903 0.0 16 0.0 0.0 0.0 8.984329457336674 0.0 17 0.0 0.0 0.0 9.272114476335958 0.0 18 0.0 0.0 0.0 9.776600781861573 0.0 19 0.0 0.0 0.0 9.955410572500648 0.0 20 0.0 0.0 0.0 10.195786608419645 0.0 21 5.94842949564456E-5 0.0 0.0 10.419328588865968 0.0 22 5.94842949564456E-5 0.0 0.0 10.654945881188448 0.0 23 5.94842949564456E-5 0.0 0.0 10.93809112518113 0.0 24 1.189685899128912E-4 0.0 0.0 11.153721694398245 0.0 25 1.189685899128912E-4 0.0 0.0 11.329259848814717 0.0 26 1.784528848693368E-4 0.0 0.0 11.502061725663191 0.0 27 1.784528848693368E-4 0.0 0.0 11.705081624349539 0.0 28 1.784528848693368E-4 0.0 0.0 11.885378522362526 0.0 29 1.784528848693368E-4 0.0 0.0 12.083104318797751 0.0 30 1.784528848693368E-4 0.0 0.0 12.368212544523995 0.0 31 2.379371798257824E-4 0.0 0.0 12.573195424943906 0.0 32 2.379371798257824E-4 0.0 0.0 12.773360077472345 0.0 33 2.379371798257824E-4 0.0 0.0 12.960021795045671 0.0 34 2.379371798257824E-4 0.0 0.0 13.148705978647518 0.0 35 2.379371798257824E-4 0.0 0.0 13.38396636520026 0.0 36 2.379371798257824E-4 0.0 0.0 13.577528260988533 0.0 37 2.379371798257824E-4 0.0 0.0 13.773647981459934 0.0 38 2.379371798257824E-4 0.0 0.0 13.982735278231841 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGATA 20 7.8575214E-4 44.000004 32 TAGCGCA 20 7.8575214E-4 44.000004 40 TAAATCG 20 7.8575214E-4 44.000004 34 AACGTAC 30 2.528419E-6 44.0 32 TAATCCG 25 4.4437224E-5 44.0 1 TCGATGG 110 0.0 42.0 2 TCACGAC 380 0.0 41.68421 25 CGGTCTA 375 0.0 41.65333 31 CGTTTTT 6825 0.0 41.485714 1 CTCACGA 390 0.0 40.615383 24 CGCATCG 60 3.6379788E-12 40.333332 21 CGTTGAT 455 0.0 40.131866 25 CGACGGT 395 0.0 39.544304 28 ACGGTCT 420 0.0 38.761906 30 TAGGGTA 885 0.0 38.53107 5 AGCGTGA 40 4.12605E-7 38.500004 40 GCGATCG 40 4.12605E-7 38.500004 9 TTACGAG 155 0.0 38.322582 1 TACGTAG 115 0.0 38.26087 1 AGGGCGC 530 0.0 38.18868 6 >>END_MODULE