##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547228_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1453544 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.352286549289186 31.0 31.0 33.0 30.0 34.0 2 31.74983901416125 31.0 31.0 34.0 30.0 34.0 3 31.82066590347454 31.0 31.0 34.0 30.0 34.0 4 35.53693386646706 37.0 35.0 37.0 33.0 37.0 5 35.44512378022268 37.0 35.0 37.0 33.0 37.0 6 35.47135621625489 37.0 35.0 37.0 33.0 37.0 7 35.962867997116014 37.0 35.0 37.0 35.0 37.0 8 35.96497663641417 37.0 35.0 37.0 35.0 37.0 9 37.67151389982003 39.0 37.0 39.0 35.0 39.0 10 37.00778098220625 39.0 37.0 39.0 32.0 39.0 11 36.840486424903546 39.0 37.0 39.0 32.0 39.0 12 36.515377587468976 39.0 35.0 39.0 32.0 39.0 13 36.44246476198863 39.0 35.0 39.0 32.0 39.0 14 37.53944084252007 40.0 36.0 41.0 32.0 41.0 15 37.64350580374588 40.0 36.0 41.0 32.0 41.0 16 37.65204837280468 40.0 36.0 41.0 32.0 41.0 17 37.56807430666014 40.0 36.0 41.0 32.0 41.0 18 37.403085149125175 39.0 36.0 41.0 32.0 41.0 19 37.27938679530857 39.0 36.0 41.0 32.0 41.0 20 37.01662694765346 38.0 35.0 41.0 32.0 41.0 21 36.925493139526566 38.0 35.0 41.0 32.0 41.0 22 36.851674252723 38.0 35.0 41.0 31.0 41.0 23 36.74643698436373 38.0 35.0 41.0 31.0 41.0 24 36.67741740188119 38.0 35.0 41.0 31.0 41.0 25 36.51056658759556 38.0 35.0 40.0 31.0 41.0 26 36.41568676283621 38.0 35.0 40.0 31.0 41.0 27 36.32239271738592 38.0 35.0 40.0 31.0 41.0 28 36.34269000456815 38.0 35.0 40.0 31.0 41.0 29 36.20640723638225 38.0 35.0 40.0 30.0 41.0 30 36.1121644752412 38.0 35.0 40.0 30.0 41.0 31 35.899157507443874 38.0 35.0 40.0 30.0 41.0 32 35.534941494719114 38.0 34.0 40.0 27.0 41.0 33 35.20690808121392 38.0 34.0 40.0 25.0 41.0 34 34.8664643106779 38.0 34.0 40.0 23.0 41.0 35 34.54558995118139 38.0 34.0 40.0 21.0 41.0 36 34.36807623298641 38.0 34.0 40.0 21.0 41.0 37 34.328685612544234 38.0 34.0 40.0 20.0 41.0 38 34.26649004089315 38.0 33.0 40.0 20.0 41.0 39 34.17458639022967 38.0 33.0 40.0 19.0 41.0 40 34.08212616886726 37.0 33.0 40.0 18.0 41.0 41 34.044802221329384 37.0 33.0 40.0 18.0 41.0 42 33.840229810724686 37.0 33.0 40.0 18.0 41.0 43 33.852243894921656 37.0 33.0 40.0 18.0 41.0 44 33.50747001810747 37.0 33.0 40.0 18.0 41.0 45 33.44940572834396 36.0 33.0 40.0 18.0 41.0 46 33.45813817813565 36.0 33.0 40.0 18.0 41.0 47 33.3862621289758 36.0 33.0 40.0 18.0 41.0 48 33.335567413163965 36.0 33.0 40.0 18.0 41.0 49 33.297239712041744 36.0 33.0 40.0 18.0 41.0 50 32.75596129184944 35.0 32.0 39.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 3.0 13 6.0 14 16.0 15 44.0 16 96.0 17 316.0 18 682.0 19 1508.0 20 2559.0 21 4264.0 22 6322.0 23 9546.0 24 14140.0 25 22176.0 26 33313.0 27 39387.0 28 38429.0 29 37051.0 30 38568.0 31 44334.0 32 52894.0 33 66826.0 34 101893.0 35 140361.0 36 114473.0 37 141544.0 38 203804.0 39 338986.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.621020072319794 22.84031305553874 26.205605059083183 20.33306181305829 2 38.854207371775466 23.151483546421712 25.76660906033804 12.227700021464779 3 27.365253477018925 23.921945259311038 35.63937520983197 13.073426053838066 4 24.18076095391677 25.822610117065597 35.75564276004029 14.24098616897734 5 21.30248551127451 29.486757882802312 34.79041570121028 14.420340904712894 6 18.310625615736434 38.80852592009599 32.72044052330029 10.160407940867287 7 80.53350982151211 3.3154139124787414 14.066584843664865 2.084491422344284 8 80.42625472637911 2.7087587303858705 13.678567693857222 3.1864188493777963 9 74.70238259041349 4.756443561392018 16.518798192555575 4.022375655638907 10 35.94469792452104 25.76158685254798 23.092730595014668 15.20098462791632 11 30.244079298597082 23.72979421331587 30.189798176044206 15.836328312042841 12 26.938021828028596 19.808894673983037 34.83623474762374 18.416848750364625 13 22.799378622181372 23.41291354097296 36.09302504774538 17.6946827891003 14 19.26780338262894 27.012666971209676 35.27069012014773 18.44883952601366 15 18.3676586329688 22.221549536856124 41.789997413219 17.620794416956073 16 20.51977786706147 20.737246344107916 39.61593181905742 19.12704396977319 17 20.37764250686598 21.601547665567743 34.59399921846191 23.42681060910437 18 22.66494856708844 22.564848398122106 35.604426147402485 19.165776887386965 19 25.03687538870512 25.82598118804797 30.786271347822975 18.35087207542393 20 25.622340981765944 23.6920932562069 30.774988579637082 19.910577182390078 21 23.861747563197262 26.48306484014244 31.35770227801842 18.297485318641886 22 21.99899005465263 23.325403290165276 32.1176379937587 22.557968661423388 23 20.598757244362744 26.186685783161707 31.52398551402641 21.690571458449142 24 21.010096701579037 23.614902610447295 34.82735988728239 20.547640800691276 25 22.00710814395711 23.77107263350817 32.898969690632 21.322849531902715 26 19.026737408705895 26.005611113251476 32.82184784223938 22.14580363580325 27 20.12900882257434 24.510300341785317 33.00065219903904 22.360038636601303 28 20.394360267043858 24.904165267786873 35.256655457282335 19.44481900788693 29 21.66456605372799 24.250521484041762 33.4470095160518 20.637902946178443 30 22.343320876423416 25.009631631378205 32.74912902533394 19.897918466864436 31 25.100306561067292 24.434554440732445 29.980998167238145 20.484140830962115 32 25.910601949442192 25.711158382546383 29.01556471630718 19.362674951704246 33 24.98734128447436 26.303434914938933 28.056391825772042 20.65283197481466 34 23.2979531407374 27.202341311993305 29.114839316869666 20.38486623039963 35 24.056512909137943 26.62547538980588 28.577738272800822 20.740273428255353 36 25.643186583963058 27.631636881993256 26.44020408050943 20.28497245353426 37 24.635167562867032 28.75124523234247 26.864890226921233 19.748696977869262 38 23.317766782429704 29.00338758235045 26.27756710495176 21.40127853026809 39 23.694638758785423 26.297724733479 27.407770249817 22.599866257918578 40 23.471322505545068 24.753705426185928 29.45174002300584 22.323232045263165 41 20.95265090014475 24.788241704413487 29.86294188548816 24.3961655099536 42 22.28759500916381 26.987418337525387 27.340211235435596 23.384775417875208 43 21.667730732609403 25.44498136967302 28.874392519249504 24.012895378468073 44 22.457386910888147 26.391220355214568 29.29894107092733 21.852451662969955 45 21.60278601817351 26.656778191785047 28.97731338026231 22.763122409779132 46 23.549476314442494 26.981295371863528 28.06719301238903 21.40203530130495 47 22.443077058554813 25.73186639000952 29.212944362193372 22.612112189242293 48 22.181715861370556 24.7184811742885 29.530994589775062 23.56880837456589 49 22.763328801880096 23.988334718453654 29.59593930421095 23.6523971754553 50 21.073596671308195 25.0606104803157 30.88451398788066 22.98127886049545 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1225.0 1 1547.0 2 1869.0 3 19307.5 4 36746.0 5 25601.5 6 14457.0 7 14351.0 8 14245.0 9 14654.0 10 15063.0 11 14967.5 12 14872.0 13 14375.5 14 13879.0 15 13117.5 16 12356.0 17 11758.5 18 11161.0 19 10602.0 20 10043.0 21 9599.0 22 9155.0 23 9419.5 24 9684.0 25 10421.0 26 11158.0 27 11768.0 28 12378.0 29 13875.5 30 15373.0 31 17603.5 32 19834.0 33 22582.5 34 25331.0 35 28887.5 36 32444.0 37 36258.5 38 40073.0 39 45597.5 40 51122.0 41 60737.5 42 70353.0 43 79484.0 44 88615.0 45 97834.0 46 107053.0 47 116705.5 48 126358.0 49 126813.5 50 127269.0 51 114420.5 52 101572.0 53 90650.5 54 79729.0 55 75816.5 56 71904.0 57 69304.0 58 66704.0 59 64691.5 60 62679.0 61 58108.0 62 53537.0 63 47871.5 64 42206.0 65 35012.0 66 27818.0 67 22914.5 68 18011.0 69 16274.5 70 14538.0 71 12160.0 72 9782.0 73 8051.5 74 6321.0 75 4713.5 76 3106.0 77 2479.0 78 1852.0 79 1389.0 80 926.0 81 674.0 82 422.0 83 286.0 84 150.0 85 131.5 86 113.0 87 72.0 88 31.0 89 22.0 90 13.0 91 10.5 92 8.0 93 5.0 94 2.0 95 2.0 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1453544.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.0611359794769 #Duplication Level Percentage of deduplicated Percentage of total 1 75.90456540471352 27.372048545224725 2 7.626708126889026 5.500555176790535 3 3.3712351813064476 3.647117108756649 4 2.072625306385537 2.9896489203229533 5 1.440714042804617 2.5976892502559603 6 1.087110557560853 2.3521464984556126 7 0.9169071860350625 2.3145300301318943 8 0.7425088539875946 2.142057019968977 9 0.6590953426938662 2.1390954098691095 >10 6.020931643796596 41.73083957905065 >50 0.12818688121017172 2.938764730415953 >100 0.026335765854798375 1.8537118999217734 >500 0.002306780071398979 0.6025374788647656 >1k 5.766950178497448E-4 0.29156380995227843 >5k 0.0 0.0 >10k+ 1.9223167261658158E-4 1.5276945420181436 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22038 1.516156373663267 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 1690 0.11626755020831842 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.045475059578519814 0.0 2 0.0 0.0 0.0 0.18664725663619403 0.0 3 0.0 0.0 0.0 0.4089315493717424 0.0 4 0.0 0.0 0.0 0.6033529084774868 0.0 5 0.0 0.0 0.0 0.9963234687082057 0.0 6 0.0 0.0 0.0 1.9565283197481467 0.0 7 0.0 0.0 0.0 2.5749478515958235 0.0 8 0.0 0.0 0.0 4.154466600254275 0.0 9 0.0 0.0 0.0 5.206722328323051 0.0 10 0.0 0.0 0.0 6.535199484845316 0.0 11 0.0 0.0 0.0 7.147702443132096 0.0 12 0.0 0.0 0.0 7.795223261215347 0.0 13 0.0 0.0 0.0 8.231811352115932 0.0 14 0.0 0.0 0.0 8.451962926474877 0.0 15 0.0 0.0 0.0 8.602491565442808 0.0 16 0.0 0.0 0.0 8.829454079133484 0.0 17 0.0 0.0 0.0 9.044583445702367 0.0 18 0.0 0.0 0.0 9.461426692277634 0.0 19 0.0 0.0 0.0 9.62124297578883 0.0 20 0.0 0.0 0.0 9.833001271375341 0.0 21 0.0 0.0 0.0 10.01613986229519 0.0 22 0.0 0.0 0.0 10.20897888196023 0.0 23 0.0 0.0 0.0 10.430368808924944 0.0 24 0.0 0.0 0.0 10.617979228698958 0.0 25 0.0 0.0 0.0 10.784193667339963 0.0 26 0.0 0.0 0.0 10.93795578255629 0.0 27 0.0 0.0 0.0 11.138775296791842 0.0 28 0.0 0.0 0.0 11.306503277506563 0.0 29 0.0 0.0 0.0 11.484482065902373 0.0 30 0.0 0.0 0.0 11.73552365803856 0.0 31 0.0 0.0 0.0 11.926298756693983 0.0 32 0.0 0.0 0.0 12.132622060288508 0.0 33 0.0 0.0 0.0 12.348095413692327 0.0 34 0.0 0.0 0.0 12.56446313286698 0.0 35 0.0 0.0 0.0 12.780142878371759 0.0 36 0.0 0.0 0.0 12.982819921515963 0.0 37 0.0 0.0 0.0 13.202489914306 0.0 38 0.0 0.0 0.0 13.452499545937378 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTATCG 20 7.8571704E-4 44.0 26 TCGACTA 20 7.8571704E-4 44.0 29 CGTTTTT 15445 0.0 42.789253 1 TAGTGCG 60 3.6379788E-12 40.333332 1 TACGGGT 95 0.0 39.36842 4 GTTTTTT 17100 0.0 39.123978 2 ACGGGTA 175 0.0 37.714287 5 CGACGGT 135 0.0 37.48148 28 CACGACG 135 0.0 37.48148 26 GCGATAC 130 0.0 37.23077 9 GGTACGC 30 1.301265E-4 36.666664 9 AGGGCGA 1635 0.0 36.59939 6 TACGGGA 430 0.0 36.32558 4 TAGGGCG 740 0.0 36.27027 5 CAACGAC 110 0.0 36.000004 12 AGGGCGC 485 0.0 35.835052 6 TTACGGG 335 0.0 35.46269 3 ACGGGAT 385 0.0 35.42857 5 TAGGGTA 660 0.0 35.333332 5 GCGCGAC 735 0.0 35.319725 9 >>END_MODULE