##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547227_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2817053 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.313798497933835 31.0 31.0 33.0 30.0 34.0 2 31.708247945636806 31.0 31.0 34.0 30.0 34.0 3 31.77704040357068 31.0 31.0 34.0 30.0 34.0 4 35.511079486257444 37.0 35.0 37.0 33.0 37.0 5 35.39908620817571 37.0 35.0 37.0 33.0 37.0 6 35.43174764550046 37.0 35.0 37.0 33.0 37.0 7 35.97579456261561 37.0 35.0 37.0 35.0 37.0 8 35.97468524731342 37.0 35.0 37.0 35.0 37.0 9 37.676322738691816 39.0 37.0 39.0 35.0 39.0 10 36.973005832691115 39.0 37.0 39.0 32.0 39.0 11 36.778801818780124 39.0 37.0 39.0 32.0 39.0 12 36.567399335404765 39.0 35.0 39.0 32.0 39.0 13 36.53246886018829 39.0 35.0 39.0 32.0 39.0 14 37.65201648673277 40.0 36.0 41.0 32.0 41.0 15 37.74558199650486 40.0 36.0 41.0 32.0 41.0 16 37.744011206036944 40.0 36.0 41.0 32.0 41.0 17 37.665583856604755 40.0 36.0 41.0 32.0 41.0 18 37.48191390080343 39.0 36.0 41.0 32.0 41.0 19 37.323789080290645 39.0 36.0 41.0 32.0 41.0 20 37.04880561352591 39.0 35.0 41.0 32.0 41.0 21 36.95848959888224 38.0 35.0 41.0 32.0 41.0 22 36.89721102158887 38.0 35.0 41.0 32.0 41.0 23 36.78148582934009 38.0 35.0 41.0 31.0 41.0 24 36.71640789150932 38.0 35.0 41.0 31.0 41.0 25 36.550554071932616 38.0 35.0 40.0 31.0 41.0 26 36.459871007041755 38.0 35.0 40.0 31.0 41.0 27 36.337252795740795 38.0 35.0 40.0 30.0 41.0 28 36.36748048403775 38.0 35.0 40.0 31.0 41.0 29 36.26932791111847 38.0 35.0 40.0 30.0 41.0 30 36.173978267359544 38.0 35.0 40.0 30.0 41.0 31 35.939702589905124 38.0 35.0 40.0 30.0 41.0 32 35.437345694241465 38.0 34.0 40.0 26.0 41.0 33 35.09953806335912 38.0 34.0 40.0 24.0 41.0 34 34.741386122305826 38.0 34.0 40.0 21.0 41.0 35 34.412449109051195 38.0 34.0 40.0 19.0 41.0 36 34.2394782774765 38.0 33.0 40.0 18.0 41.0 37 34.195111345082964 38.0 33.0 40.0 18.0 41.0 38 34.14996664954475 38.0 33.0 40.0 18.0 41.0 39 34.0275305434438 38.0 33.0 40.0 18.0 41.0 40 33.94657324516081 38.0 33.0 40.0 17.0 41.0 41 33.92222262058967 38.0 33.0 40.0 17.0 41.0 42 33.70701722686793 38.0 33.0 40.0 15.0 41.0 43 33.74350855308722 38.0 33.0 40.0 15.0 41.0 44 33.478376516167785 37.0 33.0 40.0 15.0 41.0 45 33.39787394841347 37.0 33.0 40.0 15.0 41.0 46 33.37758821009047 37.0 33.0 40.0 15.0 41.0 47 33.28166207735531 37.0 32.0 40.0 15.0 41.0 48 33.22199688823746 37.0 32.0 40.0 15.0 41.0 49 33.19831398273302 37.0 32.0 40.0 14.0 41.0 50 32.66039155102868 36.0 31.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 5.0 12 5.0 13 9.0 14 26.0 15 77.0 16 230.0 17 621.0 18 1562.0 19 3162.0 20 5656.0 21 9072.0 22 13416.0 23 19901.0 24 30193.0 25 47714.0 26 70817.0 27 82426.0 28 78123.0 29 72566.0 30 75114.0 31 85122.0 32 100215.0 33 123394.0 34 178269.0 35 249463.0 36 210005.0 37 259705.0 38 389219.0 39 710962.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.244514391458022 22.544694757251637 26.173415977619165 21.037374873671176 2 37.95200161303319 23.394377031600044 26.41061421279614 12.243007142570622 3 25.73206822874827 23.456037213357366 38.035493119937755 12.776401437956617 4 22.62051867678741 25.917829731992974 37.84078609809613 13.620865493123487 5 20.443917810563025 29.661635759071626 36.75706491855141 13.137381511813942 6 17.426615686676822 38.002550892723704 34.28945071320987 10.281382707389602 7 79.51178057352844 3.115525338003935 15.33304485219128 2.03964923627635 8 79.48675442031087 2.596862749831118 14.851548763903272 3.0648340659547406 9 73.43642451881452 5.138028996969528 17.69217689550037 3.7333695887155836 10 32.59250003461064 30.08537645546605 24.376183195701323 12.94594031422199 11 26.1155185933669 24.862649016543177 34.16350349105963 14.8583288990303 12 23.874666184839263 21.399348894039267 37.000368825151675 17.725616095969794 13 20.686831238176918 25.68396831724501 37.58367343461412 16.04552700996396 14 17.886812921162647 28.221052284071334 36.3071266319803 17.58500816278572 15 16.920128943260917 23.769698333684172 42.65450454783776 16.65566817521715 16 18.53759939908834 23.231298807654667 40.418657369953635 17.81244442330336 17 18.69641785227328 23.97242792379128 36.28980356422119 21.041350659714247 18 20.79052115810388 23.27932772297859 37.5340826033447 18.396068515572832 19 22.143388853528847 27.098354202068613 33.21325512867525 17.545001815727286 20 23.589119551531333 24.19748581230101 33.53479682490887 18.678597811258786 21 21.27588653816595 27.59312657589332 33.737739403553995 17.393247482386737 22 20.448284075592472 24.480015107986965 33.54058301352513 21.531117802895437 23 18.355671689528027 27.65833656661767 33.51420793290009 20.471783810954214 24 18.660919762602976 24.515903676643642 37.91827842784641 18.90489813290698 25 18.816188406820885 26.332198932714434 35.15851494451826 19.69309771594642 26 18.363303778807143 27.15145934421539 34.63779346714457 19.8474434098329 27 19.14305481650505 25.704699201612463 34.25469808342264 20.897547898459845 28 18.701813561903165 25.8677064293785 36.52288402099641 18.90759598772192 29 19.363391459088632 23.96550579630557 35.06863378147305 21.602468963132747 30 20.360177817030774 25.240632675352575 34.283025558979546 20.1161639486371 31 22.610721204038406 24.96917878364376 31.74853295269915 20.67156705961869 32 22.43489916590139 25.375880396996436 31.30051156297024 20.88870887413194 33 22.154783740313015 26.064117359524296 30.034791677685867 21.746307222476823 34 19.29828796263329 27.115357787020695 31.677962750434585 21.90839149991143 35 19.95773597443854 27.206197398487003 30.930727962874677 21.905338664199785 36 21.349225591424798 28.038272620358935 30.553667254396704 20.05883453381956 37 20.773695063600154 29.40349365098917 29.9349355514433 19.887875733967377 38 20.058373058653846 29.035555951556468 31.581159459903663 19.32491152988602 39 21.52664504359698 28.90325457135524 29.139316867662767 20.430783517385013 40 22.48541294750223 26.023010571686083 31.022526022762086 20.4690504580496 41 20.49031381376211 25.828410044113475 30.248916154577145 23.43235998754727 42 21.156328972156363 27.398668040679393 28.873684662659876 22.571318324504368 43 21.31227208007801 26.41654239377108 30.045050625600584 22.226134900550328 44 21.397715981914434 28.09496306956241 29.625037228621544 20.882283719901615 45 19.794409263865465 27.837317934735346 29.865678778496534 22.50259402290266 46 21.79483311105613 28.10689042769163 28.938610668666865 21.159665792585372 47 21.145147073910216 26.56829672711163 30.051227293203215 22.23532890577494 48 21.136734026658356 25.01720769896768 30.885148415738005 22.960909858635958 49 21.646060617247883 24.552289218555703 30.42512867170053 23.37652149249588 50 20.02326544796992 25.766785360445827 32.17340958796303 22.03653960362123 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2043.0 1 2389.0 2 2735.0 3 37617.5 4 72500.0 5 51541.0 6 30582.0 7 30630.0 8 30678.0 9 31807.5 10 32937.0 11 32882.0 12 32827.0 13 32381.5 14 31936.0 15 30468.0 16 29000.0 17 27626.5 18 26253.0 19 24706.0 20 23159.0 21 22476.5 22 21794.0 23 22102.5 24 22411.0 25 23760.0 26 25109.0 27 27667.0 28 30225.0 29 34946.0 30 39667.0 31 45458.5 32 51250.0 33 58741.5 34 66233.0 35 75581.0 36 84929.0 37 93244.5 38 101560.0 39 113315.5 40 125071.0 41 143943.5 42 162816.0 43 181066.0 44 199316.0 45 218585.5 46 237855.0 47 252148.5 48 266442.0 49 259264.0 50 252086.0 51 225343.0 52 198600.0 53 174390.5 54 150181.0 55 134302.0 56 118423.0 57 106832.0 58 95241.0 59 87048.0 60 78855.0 61 71073.5 62 63292.0 63 53342.0 64 43392.0 65 34128.5 66 24865.0 67 19728.0 68 14591.0 69 12219.0 70 9847.0 71 8415.5 72 6984.0 73 6139.0 74 5294.0 75 4183.0 76 3072.0 77 2298.0 78 1524.0 79 1136.0 80 748.0 81 599.5 82 451.0 83 331.5 84 212.0 85 123.0 86 34.0 87 27.0 88 20.0 89 12.5 90 5.0 91 4.0 92 3.0 93 3.0 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2817053.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.92380070364679 #Duplication Level Percentage of deduplicated Percentage of total 1 76.3548520947901 25.138919331252975 2 7.670230844528094 5.050663033524147 3 3.2511019555552414 3.2111589855581135 4 1.9867809419726588 2.6164951910124583 5 1.3758594163350375 2.264926060982529 6 1.0317297377947166 2.0381078560307406 7 0.8403108113318944 1.9366357976987725 8 0.6868710176530335 1.8091523595455627 9 0.5709319557644906 1.691752493424004 >10 5.762504604938506 39.7370987657026 >50 0.41117450518022264 8.720830782478009 >100 0.05395200234077972 2.8241701136504265 >500 0.001958882725649283 0.42444128800336073 >1k 0.0016324022713737811 0.956193200484747 >5k 0.0 0.0 >10k+ 1.0882681809158542E-4 1.5794547406515764 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44082 1.564826788846358 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCT 3132 0.11118001684739336 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07312606472082706 0.0 2 0.0 0.0 0.0 0.26957249295629154 0.0 3 0.0 0.0 0.0 0.5262591793622626 0.0 4 0.0 0.0 0.0 0.7648063419467082 0.0 5 3.549808967030439E-5 0.0 0.0 1.2562418953424022 0.0 6 3.549808967030439E-5 0.0 0.0 2.324343915432191 0.0 7 3.549808967030439E-5 0.0 0.0 3.0531196963635403 0.0 8 7.099617934060878E-5 0.0 0.0 4.872503286235651 0.0 9 7.099617934060878E-5 0.0 0.0 6.001023054944298 0.0 10 7.099617934060878E-5 0.0 0.0 7.431347582029873 0.0 11 7.099617934060878E-5 0.0 0.0 8.061545167946788 0.0 12 7.099617934060878E-5 0.0 0.0 8.767921654296174 0.0 13 7.099617934060878E-5 0.0 0.0 9.25612688153187 0.0 14 7.099617934060878E-5 0.0 0.0 9.495100021192359 0.0 15 7.099617934060878E-5 0.0 0.0 9.67692123648366 0.0 16 7.099617934060878E-5 0.0 0.0 9.98025241271641 0.0 17 1.0649426901091318E-4 0.0 0.0 10.267715942866534 0.0 18 1.0649426901091318E-4 0.0 0.0 10.807641886751865 0.0 19 1.0649426901091318E-4 0.0 0.0 10.999438065240518 0.0 20 1.0649426901091318E-4 0.0 0.0 11.251758486617042 0.0 21 1.0649426901091318E-4 0.0 0.0 11.460913230954477 0.0 22 1.0649426901091318E-4 0.0 0.0 11.686184108002228 0.0 23 1.0649426901091318E-4 0.0 0.0 11.940101943413914 0.0 24 1.0649426901091318E-4 0.0 0.0 12.151386573131568 0.0 25 1.0649426901091318E-4 0.0 0.0 12.338709992321764 0.0 26 1.0649426901091318E-4 0.0 0.0 12.516129444493945 0.0 27 1.0649426901091318E-4 0.0 0.0 12.741364823452026 0.0 28 1.0649426901091318E-4 0.0 0.0 12.938237228763533 0.0 29 1.0649426901091318E-4 0.0 0.0 13.142741723354158 0.0 30 1.0649426901091318E-4 0.0 0.0 13.436630407734608 0.0 31 1.0649426901091318E-4 0.0 0.0 13.661475307706315 0.0 32 1.0649426901091318E-4 0.0 0.0 13.892567871459997 0.0 33 1.0649426901091318E-4 0.0 0.0 14.127139248001368 0.0 34 1.0649426901091318E-4 0.0 0.0 14.356811888168238 0.0 35 1.0649426901091318E-4 0.0 0.0 14.59958332342345 0.0 36 1.0649426901091318E-4 0.0 0.0 14.831776327956911 0.0 37 1.0649426901091318E-4 0.0 0.0 15.074725253660475 0.0 38 1.0649426901091318E-4 0.0 0.0 15.330417993555677 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 33745 0.0 43.28286 1 TCACGAC 390 0.0 41.74359 25 CGGTCTA 395 0.0 41.21519 31 CTCACGA 400 0.0 40.699997 24 CGACGGT 395 0.0 40.65823 28 GTTTTTT 37685 0.0 39.113705 2 TCGTAAG 80 0.0 38.5 1 ACGGTCT 440 0.0 37.0 30 GACCGAT 1510 0.0 36.569534 9 TAGGGAC 2560 0.0 36.523438 5 GCGCGAC 555 0.0 36.468468 9 TACGGGA 810 0.0 36.12346 4 GTTAGCG 165 0.0 36.0 1 ATAGGGA 3625 0.0 35.988968 4 AGGGCGA 2980 0.0 35.953022 6 ACGGGTA 355 0.0 35.94366 5 TAGGGAT 3540 0.0 35.920906 5 AGGGATT 3750 0.0 35.904 6 ACGGGAT 990 0.0 35.77778 5 CACGACG 450 0.0 35.68889 26 >>END_MODULE