##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547223_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1350878 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.322738248753772 31.0 31.0 33.0 30.0 34.0 2 31.708089849712557 31.0 31.0 34.0 30.0 34.0 3 31.82609680518892 31.0 31.0 34.0 30.0 34.0 4 35.52385189484173 37.0 35.0 37.0 33.0 37.0 5 35.405457783752496 37.0 35.0 37.0 33.0 37.0 6 35.44107832091425 37.0 35.0 37.0 33.0 37.0 7 35.94711661600826 37.0 35.0 37.0 35.0 37.0 8 35.94123303510754 37.0 35.0 37.0 35.0 37.0 9 37.65222322074976 39.0 37.0 39.0 35.0 39.0 10 36.97537527445113 39.0 37.0 39.0 32.0 39.0 11 36.749753863783404 39.0 35.0 39.0 32.0 39.0 12 36.21707215603482 38.0 35.0 39.0 32.0 39.0 13 35.98988065539597 38.0 35.0 39.0 31.0 39.0 14 37.02911661896929 39.0 35.0 41.0 31.0 41.0 15 37.25506226320956 39.0 35.0 41.0 32.0 41.0 16 37.31971132848414 39.0 35.0 41.0 32.0 41.0 17 37.25713054768824 39.0 35.0 41.0 32.0 41.0 18 37.191454002507996 39.0 35.0 41.0 32.0 41.0 19 37.13106809053075 38.0 35.0 41.0 32.0 41.0 20 36.930277197496736 38.0 35.0 41.0 32.0 41.0 21 36.8010442097658 38.0 35.0 41.0 31.0 41.0 22 36.72227395812205 38.0 35.0 41.0 31.0 41.0 23 36.6283491181291 38.0 35.0 40.0 31.0 41.0 24 36.545864245327856 38.0 35.0 40.0 31.0 41.0 25 36.38155259024131 38.0 35.0 40.0 31.0 41.0 26 36.24403388018755 38.0 35.0 40.0 31.0 41.0 27 36.15347129792624 38.0 35.0 40.0 30.0 41.0 28 36.22313413942636 38.0 35.0 40.0 31.0 41.0 29 36.154300388340026 38.0 35.0 40.0 30.0 41.0 30 36.141996538547524 38.0 35.0 40.0 30.0 41.0 31 35.99145888821936 38.0 35.0 40.0 30.0 41.0 32 35.72730994212653 38.0 35.0 40.0 29.0 41.0 33 35.61098485577528 38.0 35.0 40.0 29.0 41.0 34 35.47631392324103 38.0 35.0 40.0 28.0 41.0 35 35.25122327848999 38.0 34.0 40.0 27.0 41.0 36 35.06818602420056 38.0 34.0 40.0 25.0 41.0 37 35.0117819669874 37.0 34.0 40.0 25.0 41.0 38 34.97217883480226 37.0 34.0 40.0 26.0 41.0 39 34.892176791686595 37.0 34.0 40.0 25.0 41.0 40 34.770926019966275 37.0 34.0 40.0 24.0 41.0 41 34.77516474470678 37.0 34.0 40.0 25.0 41.0 42 34.57299548885984 37.0 34.0 40.0 24.0 41.0 43 34.5936820349432 37.0 34.0 40.0 24.0 41.0 44 34.33196336012578 36.0 34.0 40.0 23.0 41.0 45 34.23494497652638 36.0 33.0 40.0 23.0 41.0 46 34.21982147906769 36.0 33.0 40.0 23.0 41.0 47 34.10287013335031 36.0 33.0 40.0 23.0 41.0 48 34.06871827063584 35.0 33.0 40.0 23.0 41.0 49 34.06368154637207 36.0 33.0 40.0 24.0 41.0 50 33.516185769551356 35.0 33.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 2.0 12 2.0 13 4.0 14 12.0 15 18.0 16 103.0 17 241.0 18 587.0 19 1199.0 20 2185.0 21 3479.0 22 5293.0 23 7641.0 24 10821.0 25 16214.0 26 22313.0 27 26208.0 28 28619.0 29 29977.0 30 34676.0 31 41533.0 32 51867.0 33 66822.0 34 108515.0 35 174117.0 36 104267.0 37 127763.0 38 181718.0 39 304680.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.647803872740546 23.927623367913313 27.742993815873824 15.681578943472319 2 33.23771650733819 25.075395409504043 28.330833724436992 13.356054358720773 3 28.235192223131918 25.447301680832762 33.15140227318825 13.166103822847067 4 25.02920322930716 26.89206575279189 32.841529731034186 15.237201286866764 5 22.21111010764851 31.559696730570785 31.70530573449268 14.52388742728803 6 19.393979323077286 40.67347310415892 28.805932141910667 11.12661543085312 7 84.39081841587472 3.9921443683293383 9.319568458439623 2.297468757356327 8 84.21959644024109 3.3090330881101035 8.822706417603959 3.6486640540448505 9 78.96864113561698 4.8965931786586205 12.01588892557285 4.1188767601515455 10 42.55173302104261 25.653167791614045 17.495954482936284 14.29914470440706 11 36.742104024197594 23.115706969837394 24.709929394068155 15.432259611896857 12 33.527972178094544 19.82636477905481 28.65203223385087 17.99363080899978 13 22.073866033794317 31.465091592282945 30.022400246358295 16.438642127564442 14 17.109094973787418 34.639175410362746 29.63524463349022 18.616484982359623 15 15.531010202253645 22.79317599368707 43.84363354795918 17.83218025610011 16 17.115017048171634 19.32084170443223 41.95071649697456 21.61342475042158 17 17.363744172308675 21.72305715245936 30.92936593830087 29.98383273693109 18 21.452492379030527 23.085208286758686 33.73183958877116 21.73045974543963 19 26.160837618200905 27.25871618310462 26.27742845764014 20.303017741054337 20 27.92902097746799 24.012309031607593 26.1358908798574 21.922779111067026 21 22.803539623859447 28.527224516203535 27.024498141208902 21.644737718728116 22 22.130791973812585 25.00751363187497 25.720309309945087 27.141385084367354 23 20.048294516603278 29.870647090262775 25.61956001948362 24.461498373650322 24 20.299834626072823 24.624355419216243 34.62725723566451 20.44855271904643 25 20.279625547236684 25.93579879160072 31.03144769549878 22.753127965663815 26 18.56888630949649 29.723927697393844 28.72183868565481 22.985347307454855 27 20.761460324322403 27.164333122606187 28.640188085082443 23.434018467988967 28 18.65475638806761 26.57656723997282 34.66604682288112 20.10262954907845 29 18.72833816229149 24.06731029745099 33.25348403038617 23.950867509871358 30 20.857768058995703 26.35685828031843 31.193860585485883 21.59151307519998 31 26.373884244173052 25.43952895820348 25.01624869159169 23.17033810603178 32 26.381730992732134 25.661532721681752 26.147883080485435 21.808853205100682 33 23.857076656811348 25.86843519548027 25.836826123454525 24.437662024253857 34 19.81962841944276 26.74408791911631 28.76921528072853 24.667068380712394 35 19.991812732163822 25.92950658756749 29.252530576410308 24.82615010385838 36 26.741571037503014 26.71166456186273 25.196723908450654 21.350040492183602 37 21.163421123151018 29.106699494699 27.131095480124777 22.5987839020252 38 21.121596472812495 30.605502495414093 25.655980776946546 22.616920254826862 39 20.349209921251216 28.52700243841413 25.278078405303813 25.845709235030846 40 23.000448597134604 25.52562111456401 27.142865602963408 24.33106468533798 41 18.821536807913077 24.04258563689689 27.149305858856238 29.98657169633379 42 21.963197268739293 26.75104635651776 24.928601990705303 26.35715438403764 43 21.445237837909865 26.07711429159406 26.660586670298876 25.817061200197205 44 21.705513007096126 28.380505123334604 27.976175494752304 21.937806374816972 45 19.222091114075436 29.468020058065942 26.467156915724438 24.842731912134184 46 23.206980941284115 28.22208963355684 26.705298331899698 21.865631093259346 47 22.492112537179523 25.54664447862797 27.93020539234483 24.031037591847674 48 22.535269654254492 23.50404699758231 28.521746597398135 25.438936750765055 49 21.18607305767064 23.1599004499296 29.37311881605889 26.28090767634087 50 20.08353085918936 26.795165810680167 29.352983763152558 23.768319566977922 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1612.0 1 1661.0 2 1710.0 3 9804.5 4 17899.0 5 12574.0 6 7249.0 7 7413.5 8 7578.0 9 8015.0 10 8452.0 11 8450.5 12 8449.0 13 8305.0 14 8161.0 15 7749.5 16 7338.0 17 7000.0 18 6662.0 19 6546.0 20 6430.0 21 6313.0 22 6196.0 23 6166.0 24 6136.0 25 6853.0 26 7570.0 27 8442.5 28 9315.0 29 11022.0 30 12729.0 31 15451.0 32 18173.0 33 20514.5 34 22856.0 35 26198.0 36 29540.0 37 32411.5 38 35283.0 39 43665.0 40 52047.0 41 66273.0 42 80499.0 43 94273.0 44 108047.0 45 114093.0 46 120139.0 47 126523.0 48 132907.0 49 129799.0 50 126691.0 51 112883.5 52 99076.0 53 88774.5 54 78473.0 55 69788.0 56 61103.0 57 58070.5 58 55038.0 59 54216.0 60 53394.0 61 48321.5 62 43249.0 63 38235.5 64 33222.0 65 28483.5 66 23745.0 67 20842.5 68 17940.0 69 15902.5 70 13865.0 71 11494.0 72 9123.0 73 7290.0 74 5457.0 75 4593.5 76 3730.0 77 2857.0 78 1984.0 79 1461.0 80 938.0 81 736.0 82 534.0 83 384.5 84 235.0 85 152.5 86 70.0 87 45.0 88 20.0 89 13.0 90 6.0 91 5.0 92 4.0 93 2.0 94 0.0 95 1.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1350878.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.363613276074656 #Duplication Level Percentage of deduplicated Percentage of total 1 78.42052238475567 23.027098922137213 2 7.423397116903624 4.359555242709712 3 2.841713618198401 2.5032893917839814 4 1.5841082782889844 1.8606057148442476 5 1.0842780251938557 1.591916030776916 6 0.7954903009730311 1.4015081737584196 7 0.6304820160085491 1.2959261066916463 8 0.4912161903964112 1.15391057997975 9 0.4256660854778464 1.1249184886840817 >10 5.195308993037128 36.27455067868773 >50 1.0127486607842382 19.640652646778868 >100 0.09128577044718925 4.048635583732134 >500 0.0027738769923781707 0.5756367933159648 >1k 7.565119070122283E-4 0.28841076794001586 >5k 0.0 0.0 >10k+ 2.521706356707428E-4 0.8533848781793794 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11525 0.8531488409760171 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1532 0.11340772445772304 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07254541120663746 0.0 2 0.0 0.0 0.0 0.27041672156923124 0.0 3 0.0 0.0 0.0 0.4957516518886235 0.0 4 0.0 0.0 0.0 0.7319683938890115 0.0 5 0.0 0.0 0.0 1.2254992678835543 0.0 6 0.0 0.0 0.0 2.2836259084832236 0.0 7 0.0 0.0 0.0 2.943863176393427 0.0 8 0.0 0.0 0.0 4.933236013910952 0.0 9 0.0 0.0 0.0 6.171615793580175 0.0 10 0.0 0.0 0.0 7.7921914488206925 0.0 11 0.0 0.0 0.0 8.55480657764802 0.0 12 0.0 0.0 0.0 9.348734674781882 0.0 13 0.0 0.0 0.0 9.790151294195331 0.0 14 0.0 0.0 0.0 9.983803126559172 0.0 15 0.0 0.0 0.0 10.141774460758114 0.0 16 0.0 0.0 0.0 10.427070394217687 0.0 17 0.0 0.0 0.0 10.71295853511568 0.0 18 0.0 0.0 0.0 11.259047819270133 0.0 19 0.0 0.0 0.0 11.453736014651213 0.0 20 0.0 0.0 0.0 11.70423976110352 0.0 21 0.0 0.0 0.0 11.951708444433915 0.0 22 0.0 0.0 0.0 12.19525375348477 0.0 23 0.0 0.0 0.0 12.491653576414746 0.0 24 0.0 0.0 0.0 12.722762529258748 0.0 25 0.0 0.0 0.0 12.91537799860535 0.0 26 0.0 0.0 0.0 13.094002567219245 0.0 27 7.402592980269129E-5 0.0 0.0 13.306975167261589 0.0 28 7.402592980269129E-5 0.0 0.0 13.518763352427088 0.0 29 7.402592980269129E-5 0.0 0.0 13.735141145240355 0.0 30 7.402592980269129E-5 0.0 0.0 14.030134475504079 0.0 31 7.402592980269129E-5 0.0 0.0 14.249251227720046 0.0 32 7.402592980269129E-5 0.0 0.0 14.471032913408909 0.0 33 7.402592980269129E-5 0.0 0.0 14.676899024190194 0.0 34 7.402592980269129E-5 0.0 0.0 14.884393705427136 0.0 35 7.402592980269129E-5 0.0 0.0 15.126754599601147 0.0 36 7.402592980269129E-5 0.0 0.0 15.344538885080667 0.0 37 7.402592980269129E-5 0.0 0.0 15.563803689156238 0.0 38 7.402592980269129E-5 0.0 0.0 15.793876278983003 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATATCG 20 7.8569737E-4 44.0 1 ATTCACG 25 4.4432567E-5 44.0 1 ATATACG 30 2.5280478E-6 44.0 1 TATCGAT 20 7.8569737E-4 44.0 13 CGTTTTT 7740 0.0 42.664085 1 AGGCGAT 140 0.0 42.428574 6 TCACGAC 265 0.0 41.509438 25 CGGTCTA 255 0.0 41.411766 31 TTCACGG 80 0.0 41.25 2 TTTGACG 70 0.0 40.857143 1 ACGGGTA 205 0.0 40.780487 5 GTAGCAT 545 0.0 40.366974 29 ATAACGC 55 7.8216544E-11 40.0 11 CACGACG 265 0.0 39.84906 26 CGCATGG 100 0.0 39.6 2 GTATGCG 45 2.3514076E-8 39.11111 1 GCGATTC 85 0.0 38.823532 9 GTTGATC 585 0.0 38.735046 16 GGTAATC 125 0.0 38.72 8 TACGTAG 40 4.1252497E-7 38.5 1 >>END_MODULE