##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547222_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 736485 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.354611431325825 31.0 31.0 33.0 30.0 34.0 2 31.749139493676044 31.0 31.0 34.0 30.0 34.0 3 31.871671520804906 31.0 31.0 34.0 30.0 34.0 4 35.558319585599165 37.0 35.0 37.0 33.0 37.0 5 35.427236128366495 37.0 35.0 37.0 33.0 37.0 6 35.46677800634093 37.0 35.0 37.0 33.0 37.0 7 35.95918043137335 37.0 35.0 37.0 35.0 37.0 8 35.97205238395894 37.0 35.0 37.0 35.0 37.0 9 37.69528232075331 39.0 37.0 39.0 35.0 39.0 10 37.016626272089724 39.0 37.0 39.0 33.0 39.0 11 36.73940677678432 39.0 35.0 39.0 32.0 39.0 12 36.0115766105216 37.0 35.0 39.0 32.0 39.0 13 35.652555041854214 37.0 35.0 39.0 31.0 39.0 14 36.6759472358568 38.0 35.0 41.0 31.0 41.0 15 36.98097449370999 38.0 35.0 41.0 32.0 41.0 16 37.12618043816235 38.0 35.0 41.0 32.0 41.0 17 37.06289876915348 38.0 35.0 41.0 32.0 41.0 18 37.010096607534436 38.0 35.0 41.0 32.0 41.0 19 36.943859005953954 38.0 35.0 41.0 32.0 41.0 20 36.760945572550696 38.0 35.0 41.0 32.0 41.0 21 36.62543025316198 38.0 35.0 40.0 31.0 41.0 22 36.5340937018405 38.0 35.0 40.0 31.0 41.0 23 36.47650121862631 38.0 35.0 40.0 31.0 41.0 24 36.38664738589381 38.0 35.0 40.0 31.0 41.0 25 36.21938532353001 37.0 35.0 40.0 31.0 41.0 26 36.09742493058243 37.0 35.0 40.0 31.0 41.0 27 35.99416009830478 37.0 35.0 40.0 30.0 41.0 28 36.07873751671792 37.0 35.0 40.0 31.0 41.0 29 36.047493160077934 37.0 35.0 40.0 31.0 41.0 30 36.04187593773125 37.0 35.0 40.0 31.0 41.0 31 35.9059682138808 37.0 35.0 40.0 30.0 41.0 32 35.6627602734611 37.0 34.0 40.0 30.0 41.0 33 35.58055221762833 37.0 35.0 40.0 29.0 41.0 34 35.47559963882496 37.0 35.0 40.0 29.0 41.0 35 35.3058012043694 37.0 34.0 40.0 28.0 41.0 36 35.09667678228342 37.0 34.0 40.0 27.0 41.0 37 35.00302789601961 37.0 34.0 40.0 27.0 41.0 38 34.987357515767464 37.0 34.0 40.0 27.0 41.0 39 34.8684508170567 36.0 34.0 40.0 26.0 41.0 40 34.73859481184274 36.0 34.0 40.0 25.0 41.0 41 34.72639089730273 36.0 34.0 40.0 26.0 41.0 42 34.55114225001188 36.0 34.0 40.0 24.0 41.0 43 34.55518985451163 36.0 34.0 40.0 26.0 41.0 44 34.30660502250555 35.0 34.0 40.0 24.0 41.0 45 34.216035628695764 35.0 33.0 40.0 24.0 41.0 46 34.22052994969348 35.0 34.0 40.0 24.0 41.0 47 34.100099798366564 35.0 33.0 40.0 23.0 41.0 48 34.091841653258385 35.0 33.0 40.0 24.0 41.0 49 34.074438719050626 35.0 33.0 40.0 24.0 41.0 50 33.52892862719539 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 2.0 14 0.0 15 15.0 16 54.0 17 133.0 18 371.0 19 631.0 20 1114.0 21 1806.0 22 2725.0 23 3981.0 24 5915.0 25 8243.0 26 11208.0 27 13476.0 28 14648.0 29 16249.0 30 19022.0 31 23321.0 32 29302.0 33 37719.0 34 65190.0 35 112928.0 36 54134.0 37 64762.0 38 92756.0 39 156777.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.876121034372726 24.599550567900227 29.374664792901417 15.149663604825625 2 31.4846874002865 25.968485440979787 29.466723694304704 13.08010346442901 3 27.955083946040993 25.783281397448693 32.533588599903595 13.728046056606718 4 24.959639368079458 28.1793926556549 32.24274764591268 14.61822033035296 5 22.567873072771338 31.633502379546087 31.338044902475946 14.460579645206623 6 18.91443817593026 40.94801659232707 28.473492331819383 11.664052899923284 7 85.69651791957746 4.541436689138272 7.790246916094692 1.9717984751895832 8 86.66449418521762 3.0603474612517565 7.0210527030421535 3.254105650488469 9 81.64130973475359 4.702607656639307 9.9545815597059 3.7015010489012 10 47.74367434503079 23.731780009097267 15.269421644704236 13.25512400116771 11 41.23817864586516 21.563779303040796 22.96679497885225 14.231247072241798 12 38.104238375527 19.814524396287773 25.70317114401515 16.37806608417008 13 21.53377190302586 37.22411182848259 26.05660671975668 15.185509548734869 14 15.40913935789595 39.50521734997997 27.81848917493228 17.267154117191797 15 13.099791577560982 22.06643719831361 47.093423491313466 17.740347732811937 16 14.714081074292077 17.958410558259843 44.91632551918912 22.41118284825896 17 15.608057190574145 20.170132453478345 29.7897445297596 34.43206582618791 18 20.829887913535238 22.854776404135862 34.00422276081658 22.31111292151232 19 26.46978553534695 27.01100497634032 24.690794788760122 21.828414699552603 20 29.036165027122074 23.859820634500366 24.28902150077734 22.814992837600222 21 20.905924764251818 30.234560106451593 26.207594180465314 22.651920948831272 22 21.957813125861357 25.175122371806623 24.915375058555163 27.95168944377686 23 18.944581356035766 30.972660678764676 23.811075581987414 26.27168238321215 24 19.547173397964656 24.41122358228613 36.18851707774089 19.853085942008324 25 17.991676680448347 26.574879325444513 32.525170234288545 22.9082737598186 26 17.675037509250018 32.0288940032723 26.83462663869597 23.461441848781714 27 19.253481062071867 29.22191219101543 27.60056212957494 23.92404461733776 28 17.392614920874152 27.14447680536603 35.82177505312396 19.641133220635858 29 17.220853106309022 23.22654229210371 34.64972131136411 24.902883290223155 30 19.71567649035622 27.68270908436696 31.416525794822704 21.185088630454114 31 27.18330991126771 26.166452813024026 23.289544254126017 23.360693021582247 32 28.53174199067191 25.789119941343003 24.384882244716458 21.294255823268635 33 25.08781577357312 26.079553555062223 24.36505835149392 24.467572319870737 34 19.748535272273028 25.592646150294986 28.81457191931947 25.844246658112517 35 20.24223168156853 25.047624866765787 28.512053877539937 26.198089574125742 36 28.43656014718562 22.949550907350456 26.51051956251655 22.103369382947378 37 20.391861341371513 29.524430232794963 28.395418779744325 21.688289646089192 38 22.23589075133913 29.135691833506456 26.362926604072044 22.26549081108237 39 20.78725296509773 30.10869196249754 26.244933705370784 22.859121367033953 40 24.38420334426363 24.368181293576924 27.033137131102464 24.21447823105698 41 18.340224172929524 23.08139337528938 29.010909930276924 29.567472521504172 42 22.940046301010884 26.753430144537905 24.14251478305736 26.16400877139385 43 22.52062160125461 26.01858829439839 26.433939591437706 25.02685051290929 44 22.563663889963813 28.626380713795935 27.04087659626469 21.76907879997556 45 18.48075656666463 31.664052899923284 24.779730748080407 25.075459785331677 46 23.264560717462 28.980359409899727 26.543378344433354 21.21170152820492 47 22.02814721277419 26.437334093701843 27.377611220866683 24.156907472657284 48 23.376986632450084 22.90963156072425 27.920731583127967 25.7926502236977 49 21.76201823526616 21.95794890595192 29.957025601336074 26.32300725744584 50 20.191993048059363 27.399336035357138 28.243073518130036 24.165597398453464 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1175.0 1 1078.0 2 981.0 3 3943.0 4 6905.0 5 4891.0 6 2877.0 7 3170.0 8 3463.0 9 3726.5 10 3990.0 11 4138.5 12 4287.0 13 4208.5 14 4130.0 15 3846.0 16 3562.0 17 3458.0 18 3354.0 19 3189.5 20 3025.0 21 2867.0 22 2709.0 23 2690.0 24 2671.0 25 2797.0 26 2923.0 27 3375.5 28 3828.0 29 4741.5 30 5655.0 31 6632.5 32 7610.0 33 9948.0 34 12286.0 35 14304.0 36 16322.0 37 17407.0 38 18492.0 39 23424.0 40 28356.0 41 39833.0 42 51310.0 43 59076.0 44 66842.0 45 69191.0 46 71540.0 47 72820.5 48 74101.0 49 74298.5 50 74496.0 51 65890.5 52 57285.0 53 48732.0 54 40179.0 55 36715.5 56 33252.0 57 30440.0 58 27628.0 59 26718.5 60 25809.0 61 22982.0 62 20155.0 63 17992.5 64 15830.0 65 13841.0 66 11852.0 67 10046.0 68 8240.0 69 7495.0 70 6750.0 71 5885.5 72 5021.0 73 4137.5 74 3254.0 75 2639.0 76 2024.0 77 1613.0 78 1202.0 79 895.0 80 588.0 81 433.5 82 279.0 83 215.0 84 151.0 85 104.0 86 57.0 87 39.0 88 21.0 89 17.0 90 13.0 91 8.0 92 3.0 93 1.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 736485.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.008222798921054 #Duplication Level Percentage of deduplicated Percentage of total 1 77.19072674165334 23.163565260741663 2 7.300915597412967 4.381750037665722 3 2.9923920655583762 2.6938910341499795 4 1.764553666366939 2.118044782439684 5 1.2004488257780541 1.8011667911325504 6 0.8952644389554358 1.6119176848875465 7 0.6792848835614176 1.426889249089511 8 0.5951491699159879 1.428749511154551 9 0.4620013600049077 1.2477455769988626 >10 6.20295825193299 44.16716518551457 >50 0.6664356634981851 12.598678285209541 >100 0.048055904984596456 2.3165667156025145 >500 9.067151883886124E-4 0.21046092958874146 >1k 9.067151883886124E-4 0.8334089558245833 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4660 0.6327352220343931 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1466 0.1990536127687597 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 993 0.13482962993136316 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06476710319965784 0.0 2 0.0 0.0 0.0 0.2543161096288451 0.0 3 0.0 0.0 0.0 0.4533697223976048 0.0 4 0.0 0.0 0.0 0.6949225035133099 0.0 5 0.0 0.0 0.0 1.146798644914696 0.0 6 0.0 0.0 0.0 2.1189840933623905 0.0 7 0.0 0.0 0.0 2.7230697162875006 0.0 8 0.0 0.0 0.0 4.5685927072513355 0.0 9 0.0 0.0 0.0 5.69543167885293 0.0 10 0.0 0.0 0.0 7.236535706769317 0.0 11 0.0 0.0 0.0 8.011840023897296 0.0 12 0.0 0.0 0.0 8.778997535591357 0.0 13 0.0 0.0 0.0 9.209827762955118 0.0 14 0.0 0.0 0.0 9.398018968478652 0.0 15 0.0 0.0 0.0 9.552400931451421 0.0 16 0.0 0.0 0.0 9.84405656598573 0.0 17 0.0 0.0 0.0 10.133132378799298 0.0 18 0.0 0.0 0.0 10.649639843309776 0.0 19 0.0 0.0 0.0 10.833486085935219 0.0 20 0.0 0.0 0.0 11.082235211850886 0.0 21 0.0 0.0 0.0 11.306815481645927 0.0 22 0.0 0.0 0.0 11.530173730625878 0.0 23 0.0 0.0 0.0 11.79996877057917 0.0 24 0.0 0.0 0.0 11.993048059363055 0.0 25 0.0 0.0 0.0 12.167253915558362 0.0 26 0.0 0.0 0.0 12.326795521972613 0.0 27 0.0 0.0 0.0 12.533317039722466 0.0 28 0.0 0.0 0.0 12.699647650664984 0.0 29 0.0 0.0 0.0 12.874939747584811 0.0 30 0.0 0.0 0.0 13.140797164911708 0.0 31 0.0 0.0 0.0 13.325865428352241 0.0 32 0.0 0.0 0.0 13.498441923460764 0.0 33 0.0 0.0 0.0 13.668710157029675 0.0 34 0.0 0.0 0.0 13.852963739926814 0.0 35 0.0 0.0 0.0 14.067632063110587 0.0 36 0.0 0.0 0.0 14.24333150030211 0.0 37 0.0 0.0 0.0 14.431522705825644 0.0 38 0.0 0.0 0.0 14.631119438956667 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAATCGT 30 2.5264726E-6 44.000004 12 ATTAGCG 30 2.5264726E-6 44.000004 1 TACTGGC 30 2.5264726E-6 44.000004 3 ACGTTAG 25 4.441277E-5 44.0 1 GACGTAG 20 7.854638E-4 44.0 1 AAGCGGT 20 7.854638E-4 44.0 3 ACCCTTA 20 7.854638E-4 44.0 31 ACGGGTA 75 0.0 44.0 5 TCTAGCG 40 8.305506E-9 44.0 1 TGCGCAA 25 4.441277E-5 44.0 1 TGCGAAC 20 7.854638E-4 44.0 37 TCATCGG 20 7.854638E-4 44.0 2 GTCCATA 25 4.441277E-5 44.0 33 TTACCTA 20 7.854638E-4 44.0 40 CGCATCG 35 1.4451325E-7 43.999996 21 GCTTGCG 35 1.4451325E-7 43.999996 1 GTCTCAC 280 0.0 43.214283 22 TCACGAC 275 0.0 43.2 25 CGGTCTA 265 0.0 43.16981 31 ACGGTCT 265 0.0 43.16981 30 >>END_MODULE