##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547221_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2004047 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.455888509600822 31.0 31.0 33.0 30.0 34.0 2 31.855907072039727 31.0 31.0 34.0 30.0 34.0 3 31.934715602977374 33.0 31.0 34.0 30.0 34.0 4 35.64419996137815 37.0 35.0 37.0 33.0 37.0 5 35.55973188253569 37.0 35.0 37.0 33.0 37.0 6 35.59275156720376 37.0 35.0 37.0 33.0 37.0 7 36.03456356063506 37.0 35.0 37.0 35.0 37.0 8 36.036394356020594 37.0 35.0 37.0 35.0 37.0 9 37.76710775745279 39.0 38.0 39.0 35.0 39.0 10 37.1411438953278 39.0 37.0 39.0 33.0 39.0 11 36.94919530330377 39.0 37.0 39.0 33.0 39.0 12 36.665469422623325 39.0 35.0 39.0 32.0 39.0 13 36.60365949501185 39.0 35.0 39.0 32.0 39.0 14 37.7209052482302 40.0 36.0 41.0 33.0 41.0 15 37.8266602529781 40.0 36.0 41.0 33.0 41.0 16 37.83471345731911 40.0 36.0 41.0 33.0 41.0 17 37.73768080289534 40.0 36.0 41.0 33.0 41.0 18 37.60039060960147 39.0 36.0 41.0 33.0 41.0 19 37.46091833175569 39.0 36.0 41.0 33.0 41.0 20 37.21487719599391 39.0 35.0 41.0 32.0 41.0 21 37.127196118653906 39.0 35.0 41.0 32.0 41.0 22 37.06283684963476 39.0 35.0 41.0 32.0 41.0 23 36.95738622896569 38.0 35.0 41.0 32.0 41.0 24 36.87915752474867 38.0 35.0 41.0 32.0 41.0 25 36.69557300801827 38.0 35.0 41.0 31.0 41.0 26 36.60060367845664 38.0 35.0 40.0 31.0 41.0 27 36.520280212989015 38.0 35.0 40.0 31.0 41.0 28 36.541973316993065 38.0 35.0 40.0 31.0 41.0 29 36.407054325572204 38.0 35.0 40.0 31.0 41.0 30 36.30162665845661 38.0 35.0 40.0 31.0 41.0 31 36.10677194696532 38.0 35.0 40.0 30.0 41.0 32 35.74186483650333 38.0 35.0 40.0 29.0 41.0 33 35.44630889395309 38.0 35.0 40.0 26.0 41.0 34 35.10599801302065 38.0 34.0 40.0 24.0 41.0 35 34.7818988277221 38.0 34.0 40.0 23.0 41.0 36 34.61517419501639 38.0 34.0 40.0 22.0 41.0 37 34.553123754083614 38.0 34.0 40.0 22.0 41.0 38 34.48364684061801 38.0 34.0 40.0 22.0 41.0 39 34.362203082063445 38.0 34.0 40.0 21.0 41.0 40 34.23995345418545 37.0 33.0 40.0 21.0 41.0 41 34.19527785525988 37.0 33.0 40.0 21.0 41.0 42 33.99675456713341 37.0 33.0 40.0 20.0 41.0 43 33.992043599775855 37.0 33.0 40.0 20.0 41.0 44 33.71723068371151 36.0 33.0 40.0 18.0 41.0 45 33.611835949955264 36.0 33.0 40.0 19.0 41.0 46 33.5910609880906 36.0 33.0 40.0 20.0 41.0 47 33.48662880660982 36.0 33.0 40.0 19.0 41.0 48 33.41973965680446 36.0 33.0 40.0 20.0 41.0 49 33.387379637303916 35.0 33.0 40.0 20.0 41.0 50 32.91868953173254 35.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 1.0 13 7.0 14 18.0 15 60.0 16 146.0 17 356.0 18 827.0 19 1623.0 20 3029.0 21 5070.0 22 7773.0 23 11718.0 24 17522.0 25 27367.0 26 40952.0 27 50911.0 28 50984.0 29 49138.0 30 50582.0 31 58261.0 32 70213.0 33 88691.0 34 138469.0 35 191706.0 36 166310.0 37 208763.0 38 296500.0 39 467045.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.64451731920459 22.198281776824597 25.8647127537428 20.292488150228014 2 38.64335517081186 23.347456421930225 25.78697006607131 12.22221834118661 3 27.912768512914116 23.688765782439233 35.41718332953269 12.981282375113956 4 24.125082894762446 26.202529182199818 35.21454337148779 14.45784455154994 5 21.4886676809476 29.797055657876285 34.52923010288681 14.185046558289303 6 18.553506978628747 38.68776530690148 32.250291535078766 10.508436179391003 7 81.84907838987809 3.3556099233201615 12.940315272047012 1.8549964147547437 8 81.92058369888531 2.787659171666134 12.645312210741563 2.6464449187069965 9 76.8830770935013 4.588215745439104 14.99730295746557 3.5314042035940276 10 37.64936650687334 26.353773140051107 21.64525083493551 14.351609518140043 11 30.420943221391518 24.6199315684712 28.497535237447025 16.46158997269026 12 26.639993972197257 20.583748784334897 33.63279404125751 19.143463202210327 13 23.111384114244828 23.459529641769876 34.961006403542434 18.468079840442865 14 19.62518843120945 26.423432184973706 35.287445853315816 18.66393353050103 15 19.28567543575575 21.789409130624183 39.735395427352756 19.18952000626732 16 21.414168430181526 20.5545578521861 37.85759515620143 20.173678561430943 17 20.84851303387595 21.06597300362716 34.100148349814155 23.985365612682735 18 23.37365341232017 21.775337604357585 34.42958174134639 20.421427241975863 19 25.61656488096337 25.228899322221487 29.95952689732327 19.195008899491878 20 26.42133642574251 23.724044396164363 29.437932343902112 20.416686834191015 21 24.687195459986714 25.188830401682193 31.216483445747528 18.907490692583558 22 23.576642663570265 21.826084917170103 31.012346516823207 23.58492590243642 23 21.910015084476562 25.81551231083902 30.088266392953855 22.186206211730564 24 22.04109983448492 24.00437714285144 33.32870935661688 20.625813666046756 25 22.58619683071305 23.699593871800413 31.92035915325339 21.793850144233147 26 20.071585147454126 25.414723307387497 31.624956899713432 22.88873464544494 27 21.399597913621786 23.15818940374153 32.330479275186654 23.111733407450025 28 21.52933538983866 24.332263664474933 33.83613258571281 20.302268359973592 29 22.435801156360107 23.528490100282077 32.6782256104772 21.357483132880617 30 23.22380662728968 22.944721356335453 33.62376231695165 20.20770969942322 31 26.746777894929608 22.669777704814308 29.287636467607797 21.295807932648287 32 26.211261512329802 23.414620515387114 29.769611191753487 20.6045067805296 33 25.827038986610596 22.974760571982593 28.862995728144103 22.335204713262712 34 23.862913394745732 24.815286268236225 30.27319219559222 21.048608141425827 35 24.346983878122618 24.48011448833286 29.929936772939957 21.242964860604566 36 27.389627089584227 25.130348739325974 26.6281679022498 20.851856268840002 37 25.283339163203255 25.81067210499554 27.914315382822856 20.991673348978342 38 25.094870529483586 26.73076030651976 26.62327779737701 21.551091366619644 39 24.34543700821388 25.01208803985136 26.755011234766453 23.887463717168313 40 24.29738424298432 23.583079638351794 29.29367425015481 22.825861868509072 41 21.96520341089805 23.88172532879718 29.36572844848449 24.78734281182028 42 23.51381978566371 25.70249100944239 26.931504101450717 23.852185103443183 43 23.03164546540076 24.389697447215557 28.472635621819247 24.10602146556443 44 23.644156050232354 25.078503647868537 29.06433831142683 22.21300199047228 45 22.43240802236674 25.650695817014274 28.886897363185593 23.029998797433393 46 24.067449515904567 25.28543492243445 28.444692165403307 22.20242339625767 47 23.13363908131895 25.22515689502292 28.886697767068338 22.754506256589792 48 23.258187058487152 24.690388997862826 29.359041978556395 22.692381965093634 49 23.535326267298124 23.858971371429913 29.171870719598893 23.433831641673073 50 22.257412126561903 24.366344701496523 29.947301635141294 23.428941536800284 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1956.0 1 2337.0 2 2718.0 3 27220.5 4 51723.0 5 35483.5 6 19244.0 7 19383.0 8 19522.0 9 19994.5 10 20467.0 11 20431.0 12 20395.0 13 19585.0 14 18775.0 15 17819.0 16 16863.0 17 15882.5 18 14902.0 19 13904.0 20 12906.0 21 12310.5 22 11715.0 23 11852.0 24 11989.0 25 12601.5 26 13214.0 27 14662.5 28 16111.0 29 17969.5 30 19828.0 31 23136.5 32 26445.0 33 29523.0 34 32601.0 35 38309.0 36 44017.0 37 46319.0 38 48621.0 39 56589.5 40 64558.0 41 72446.5 42 80335.0 43 90567.0 44 100799.0 45 107791.0 46 114783.0 47 126205.5 48 137628.0 49 151000.0 50 164372.0 51 161338.0 52 158304.0 53 143326.0 54 128348.0 55 117375.0 56 106402.0 57 103772.0 58 101142.0 59 98663.5 60 96185.0 61 91689.5 62 87194.0 63 80031.0 64 72868.0 65 61894.0 66 50920.0 67 43523.5 68 36127.0 69 32558.0 70 28989.0 71 25333.0 72 21677.0 73 17594.5 74 13512.0 75 10587.5 76 7663.0 77 5858.0 78 4053.0 79 3074.0 80 2095.0 81 1597.5 82 1100.0 83 839.0 84 578.0 85 420.5 86 263.0 87 165.5 88 68.0 89 56.0 90 44.0 91 32.0 92 20.0 93 12.5 94 5.0 95 4.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2004047.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.195786289151577 #Duplication Level Percentage of deduplicated Percentage of total 1 74.4372898239959 23.221297852930135 2 7.344333695728478 4.582245288163208 3 3.315712513554505 3.1030877690733583 4 2.115801301772226 2.6401634096158033 5 1.5085640535387168 2.3530420908845016 6 1.1462963201129484 2.1455769015770656 7 0.9950725134448937 2.172944863014507 8 0.8371347455777894 2.0892061294614397 9 0.7268800956727836 2.040803651020159 >10 7.277910101244754 45.72592880432262 >50 0.254821657797941 5.011524610132287 >100 0.035682880374123364 2.0903278385880473 >500 0.003214497989320012 0.725266365322295 >1k 0.001125074296262004 0.5018452160740305 >5k 0.0 0.0 >10k+ 1.607248994660006E-4 1.596739209820519 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31846 1.589084487539464 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 2789 0.13916839275725568 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.989902931418275E-5 0.0 0.0 0.04211478074117024 0.0 2 4.989902931418275E-5 0.0 0.0 0.15788052875007422 0.0 3 4.989902931418275E-5 0.0 0.0 0.3397125915709562 0.0 4 4.989902931418275E-5 0.0 0.0 0.46905087555331787 0.0 5 4.989902931418275E-5 0.0 0.0 0.7301724959544362 0.0 6 4.989902931418275E-5 0.0 0.0 1.4105956596826321 0.0 7 4.989902931418275E-5 0.0 0.0 1.829947102039024 0.0 8 4.989902931418275E-5 0.0 0.0 2.9395019178691917 0.0 9 4.989902931418275E-5 0.0 0.0 3.7255114276261985 0.0 10 4.989902931418275E-5 0.0 0.0 4.751435470325796 0.0 11 4.989902931418275E-5 0.0 0.0 5.267092039258561 0.0 12 4.989902931418275E-5 0.0 0.0 5.760593439175827 0.0 13 4.989902931418275E-5 0.0 0.0 6.1186688735344035 0.0 14 4.989902931418275E-5 0.0 0.0 6.31641872670651 0.0 15 4.989902931418275E-5 0.0 0.0 6.447353779626925 0.0 16 4.989902931418275E-5 0.0 0.0 6.6252438191319865 0.0 17 4.989902931418275E-5 0.0 0.0 6.789661120722219 0.0 18 4.989902931418275E-5 0.0 0.0 7.101829448111746 0.0 19 4.989902931418275E-5 0.0 0.0 7.230419246654395 0.0 20 4.989902931418275E-5 0.0 0.0 7.395734730772283 0.0 21 4.989902931418275E-5 0.0 0.0 7.537298276936618 0.0 22 4.989902931418275E-5 0.0 0.0 7.686446475556711 0.0 23 4.989902931418275E-5 0.0 0.0 7.854506406286879 0.0 24 4.989902931418275E-5 0.0 0.0 8.005051777727768 0.0 25 4.989902931418275E-5 0.0 0.0 8.133092686947961 0.0 26 9.97980586283655E-5 0.0 0.0 8.267321075803112 0.0 27 9.97980586283655E-5 0.0 0.0 8.449103239594681 0.0 28 9.97980586283655E-5 0.0 0.0 8.588620925557136 0.0 29 9.97980586283655E-5 0.0 0.0 8.725693559083195 0.0 30 9.97980586283655E-5 0.0 0.0 8.921247854965477 0.0 31 9.97980586283655E-5 0.0 0.0 9.069497871057914 0.0 32 9.97980586283655E-5 0.0 0.0 9.247138415416405 0.0 33 9.97980586283655E-5 0.0 0.0 9.403022982993912 0.0 34 9.97980586283655E-5 0.0 0.0 9.554017445698628 0.0 35 9.97980586283655E-5 0.0 0.0 9.719931718168286 0.0 36 9.97980586283655E-5 0.0 0.0 9.876065780892365 0.0 37 9.97980586283655E-5 0.0 0.0 10.044574802886359 0.0 38 9.97980586283655E-5 0.0 0.0 10.23533879195448 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 19620 0.0 42.84506 1 GTATACG 65 0.0 40.615383 1 TCACGAC 300 0.0 39.600002 25 GTTTTTT 22030 0.0 38.577396 2 TATAGCG 75 0.0 38.133335 1 CAACCCG 185 0.0 38.054054 23 TAATACG 35 7.2929197E-6 37.714287 1 CGGTCTA 315 0.0 37.714287 31 AGTACGG 235 0.0 37.446808 2 CTCACGA 325 0.0 37.23077 24 ACGGGCT 615 0.0 36.845528 5 TAGCATA 1160 0.0 36.793102 30 GTTGATC 1170 0.0 36.478634 16 GGTACCT 1270 0.0 36.377953 8 GTAGCAT 1180 0.0 36.35593 29 GCCAGTA 1190 0.0 36.235294 25 TTAGGGA 1965 0.0 36.16285 4 GGCGATA 920 0.0 36.108696 8 AGGGCGA 2105 0.0 36.057007 6 TACGTAG 110 0.0 36.000004 1 >>END_MODULE