##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547220_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3375980 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.303698481626075 31.0 31.0 33.0 30.0 34.0 2 31.687658990870798 31.0 31.0 34.0 30.0 34.0 3 31.78634440962328 31.0 31.0 34.0 30.0 34.0 4 35.486262359374166 37.0 35.0 37.0 33.0 37.0 5 35.36566626579541 37.0 35.0 37.0 33.0 37.0 6 35.39481395031961 37.0 35.0 37.0 33.0 37.0 7 35.952888050284656 37.0 35.0 37.0 35.0 37.0 8 35.956670951842135 37.0 35.0 37.0 35.0 37.0 9 37.660710667717225 39.0 37.0 39.0 35.0 39.0 10 36.9937810650537 39.0 37.0 39.0 32.0 39.0 11 36.72201582947766 39.0 35.0 39.0 32.0 39.0 12 36.24434534564778 38.0 35.0 39.0 32.0 39.0 13 36.031579274758734 38.0 35.0 39.0 31.0 39.0 14 37.07779044899555 39.0 35.0 41.0 31.0 41.0 15 37.29214183733316 39.0 35.0 41.0 32.0 41.0 16 37.362996522491244 39.0 35.0 41.0 32.0 41.0 17 37.30434392383841 39.0 35.0 41.0 32.0 41.0 18 37.199271618907694 39.0 35.0 41.0 32.0 41.0 19 37.11193816314078 38.0 35.0 41.0 32.0 41.0 20 36.892044976569764 38.0 35.0 41.0 32.0 41.0 21 36.76647877060883 38.0 35.0 41.0 31.0 41.0 22 36.68356299504144 38.0 35.0 40.0 31.0 41.0 23 36.58709648753843 38.0 35.0 40.0 31.0 41.0 24 36.505013062873594 38.0 35.0 40.0 31.0 41.0 25 36.331244260925715 38.0 35.0 40.0 31.0 41.0 26 36.21898559825591 38.0 35.0 40.0 31.0 41.0 27 36.094723902392786 38.0 35.0 40.0 30.0 41.0 28 36.14589334060036 38.0 35.0 40.0 30.0 41.0 29 36.087359818482334 38.0 35.0 40.0 30.0 41.0 30 35.99880686496958 38.0 35.0 40.0 30.0 41.0 31 35.83032867493291 38.0 35.0 40.0 30.0 41.0 32 35.472898832339055 38.0 34.0 40.0 28.0 41.0 33 35.288034289302665 38.0 34.0 40.0 26.0 41.0 34 35.10720650003851 38.0 34.0 40.0 25.0 41.0 35 34.876212536804125 38.0 34.0 40.0 24.0 41.0 36 34.67612426613902 38.0 34.0 40.0 23.0 41.0 37 34.641741657237304 38.0 34.0 40.0 23.0 41.0 38 34.60976309101357 38.0 34.0 40.0 23.0 41.0 39 34.53195575803174 37.0 34.0 40.0 23.0 41.0 40 34.438230084301445 37.0 34.0 40.0 23.0 41.0 41 34.460141055338006 37.0 34.0 40.0 23.0 41.0 42 34.23821586620774 37.0 33.0 40.0 22.0 41.0 43 34.250761260434004 37.0 33.0 40.0 22.0 41.0 44 33.90315167743885 37.0 33.0 40.0 20.0 41.0 45 33.82688967351702 36.0 33.0 40.0 20.0 41.0 46 33.84573042494328 36.0 33.0 40.0 20.0 41.0 47 33.771612391068665 36.0 33.0 40.0 20.0 41.0 48 33.74051238455204 36.0 33.0 40.0 20.0 41.0 49 33.74182341127613 36.0 33.0 40.0 20.0 41.0 50 33.149107814619754 35.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 5.0 13 15.0 14 33.0 15 95.0 16 291.0 17 760.0 18 1848.0 19 3695.0 20 6325.0 21 9793.0 22 14849.0 23 21815.0 24 31831.0 25 46954.0 26 66335.0 27 78053.0 28 79547.0 29 81816.0 30 90592.0 31 106530.0 32 129588.0 33 164669.0 34 255731.0 35 401512.0 36 250429.0 37 303090.0 38 446923.0 39 782852.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.839371086321606 23.96018341340885 28.257691100065756 16.942754400203793 2 33.57590980989224 25.05322898832339 28.334113353752095 13.036747848032276 3 27.26778594659921 24.79520020853204 34.809122091955516 13.127891752913229 4 23.832724127512602 27.701171215469284 34.566940562444096 13.89916409457402 5 21.814524967564974 31.87646253828518 32.6373378989212 13.671674595228644 6 18.457277590507054 40.30746627645899 30.51454688712611 10.720709245907853 7 83.27747794714423 3.825496596543818 10.874501626194467 2.022523830117477 8 83.19430209894608 3.0915467508693775 10.178851770448876 3.5352993797356618 9 77.33031593789063 5.758120604979887 13.309231689761194 3.60233176736829 10 39.79448930384659 31.777350576721425 16.95697249391288 11.471187625519107 11 33.51684547894241 23.419007221606762 29.47979549641882 13.584351803032007 12 31.26155960639577 21.553859916231733 30.427549926243643 16.757030551128857 13 21.58750940467657 30.8491460257466 31.925988898038494 15.637355671538339 14 17.087897440150712 33.589861314344276 31.51603386275985 17.80620738274516 15 15.543190421744205 23.340007938435654 44.84570406222786 16.271097577592283 16 17.12062867671017 21.954425085456666 41.71846397194296 19.2064822658902 17 17.678096434220585 22.391453740839697 32.89216760762801 27.038282217311714 18 20.753914418924282 23.309735247246728 35.74775324498368 20.188597088845313 19 24.39534594399256 27.14770229681455 29.287199568717824 19.169752190475062 20 26.1246512123887 25.110190226245415 28.562432241897167 20.202726319468717 21 21.913636929128728 28.580856521661858 29.526389374344635 19.97911717486478 22 21.451193431240707 25.23501324059977 28.826207501229273 24.487585826930257 23 18.775970236790503 29.705004176565026 28.29702782599423 23.22199776065024 24 19.231097340624057 24.76128413083016 36.70803736988964 19.299581158656153 25 18.33381714346649 26.401637450458832 33.765691739879976 21.498853666194705 26 17.899424759625354 30.174764068507514 30.654654352217726 21.271156819649406 27 19.49380624292798 28.242169681100005 30.685371358835063 21.57865271713695 28 18.489149817238253 26.71698292051493 35.94088235119876 18.85298491104805 29 18.52620572396756 24.122595513006594 34.20357940509126 23.147619357934584 30 20.643783434735987 27.155699974525916 31.48955266322668 20.71096392751142 31 25.667332152441663 25.74043685092921 26.554008021374536 22.03822297525459 32 26.441003797415863 26.212122109728135 26.33504937825461 21.01182471460139 33 24.618718120368012 28.09806337715271 25.61505103703221 21.66816746544707 34 21.17145243751444 27.741574298425935 27.72421637568943 23.362756888370193 35 22.10164159740283 27.049952902564588 28.0987446608096 22.749660839222983 36 26.190232169621858 26.972642018021432 26.813073537165504 20.024052275191202 37 21.94776035403053 28.960983181179984 27.3598777243941 21.73137874039538 38 20.76019407697913 29.72304338295843 27.648712373888472 21.86805016617397 39 20.5468041872286 28.169509298040868 27.257655554831484 24.026030959899053 40 22.691633244272776 25.65515790970326 28.24930834898311 23.40390049704086 41 18.95896895123786 24.50932766189373 27.92723890544375 28.604464481424653 42 22.51595092387988 26.2838642409019 26.061854631840237 25.138330203377983 43 21.952588581685912 25.715969881338157 28.414741793494038 23.916699743481892 44 22.485915200919436 28.484410452668556 27.950284065663894 21.079390280748108 45 19.596650454090366 30.064870052547704 27.327116866806083 23.011362626555844 46 23.060207702652267 28.601976315025563 26.732060024052274 21.605755958269896 47 21.833097352472468 25.807795069876004 27.83908672444742 24.520020853204105 48 22.908548036422015 23.730383473835744 29.117796906379777 24.24327158336246 49 22.311388100640407 22.807155255659097 29.40633534558854 25.475121298111958 50 20.53513350197572 26.858304847777536 29.66344587349451 22.943115776752233 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4704.0 1 4244.0 2 3784.0 3 27760.0 4 51736.0 5 37136.0 6 22536.0 7 23438.5 8 24341.0 9 25856.5 10 27372.0 11 28186.5 12 29001.0 13 28476.0 14 27951.0 15 26977.5 16 26004.0 17 24629.5 18 23255.0 19 22005.5 20 20756.0 21 19910.5 22 19065.0 23 19318.0 24 19571.0 25 19896.0 26 20221.0 27 22510.5 28 24800.0 29 28968.5 30 33137.0 31 40504.5 32 47872.0 33 56447.5 34 65023.0 35 73931.5 36 82840.0 37 92932.0 38 103024.0 39 119539.0 40 136054.0 41 171261.0 42 206468.0 43 238222.0 44 269976.0 45 276344.0 46 282712.0 47 293317.0 48 303922.0 49 322536.0 50 341150.0 51 325182.5 52 309215.0 53 267565.0 54 225915.0 55 192405.0 56 158895.0 57 139984.0 58 121073.0 59 112307.0 60 103541.0 61 90851.0 62 78161.0 63 66858.5 64 55556.0 65 45442.0 66 35328.0 67 29428.5 68 23529.0 69 20636.0 70 17743.0 71 14784.0 72 11825.0 73 9847.0 74 7869.0 75 6633.0 76 5397.0 77 3760.5 78 2124.0 79 1875.5 80 1627.0 81 1097.0 82 567.0 83 366.0 84 165.0 85 138.5 86 112.0 87 71.5 88 31.0 89 25.5 90 20.0 91 13.0 92 6.0 93 6.0 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3375980.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.357729270567926 #Duplication Level Percentage of deduplicated Percentage of total 1 78.68022513465537 19.95151847911925 2 8.033586543487678 4.074270252828762 3 2.969751591854576 2.259184706012594 4 1.5501502253552029 1.5723315897306838 5 1.022173235236304 1.295999608337137 6 0.7132596433166942 1.0851986960907947 7 0.5295127828728667 0.9399069255376621 8 0.43113667981093307 0.8746117764205736 9 0.3550966522916844 0.8104000296327775 >10 4.001290666401663 23.407721735661692 >50 1.1556323696533715 20.68837619571787 >100 0.551437692464487 20.274936917368706 >500 0.004497855066092478 0.7332260916599895 >1k 0.0021305629260437906 1.0403352393887082 >5k 0.0 0.0 >10k+ 1.1836460700243281E-4 0.9919817564927961 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 33050 0.978974993927689 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3999 0.11845449321382237 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3409 0.10097808636307087 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07420067654429233 0.0 2 0.0 0.0 0.0 0.26809992950195205 0.0 3 0.0 0.0 0.0 0.4830004917090741 0.0 4 0.0 0.0 0.0 0.7712723416607918 0.0 5 0.0 0.0 0.0 1.2735857439913743 0.0 6 0.0 0.0 0.0 2.386240439813032 0.0 7 0.0 0.0 0.0 3.1408361423942086 0.0 8 0.0 0.0 0.0 5.3263052506235224 0.0 9 0.0 0.0 0.0 6.6165083916373915 0.0 10 0.0 0.0 0.0 8.289296737539914 0.0 11 2.962102856059574E-5 0.0 0.0 9.067915094283734 0.0 12 2.962102856059574E-5 0.0 0.0 9.901806290321625 0.0 13 2.962102856059574E-5 0.0 0.0 10.386021244201684 0.0 14 2.962102856059574E-5 0.0 0.0 10.609867357034105 0.0 15 2.962102856059574E-5 0.0 0.0 10.791029567710709 0.0 16 2.962102856059574E-5 6.516626283331063E-4 0.0 11.105693754109918 0.0 17 2.962102856059574E-5 6.516626283331063E-4 0.0 11.41807712130996 0.0 18 2.962102856059574E-5 6.516626283331063E-4 0.0 11.978062666248023 0.0 19 2.962102856059574E-5 6.516626283331063E-4 0.0 12.183484499315755 0.0 20 2.962102856059574E-5 6.516626283331063E-4 0.0 12.460974294871415 0.0 21 5.924205712119148E-5 6.516626283331063E-4 0.0 12.715211583007008 0.0 22 5.924205712119148E-5 6.516626283331063E-4 0.0 12.982097050337975 0.0 23 5.924205712119148E-5 6.516626283331063E-4 0.0 13.284290783713173 0.0 24 8.886308568178722E-5 6.516626283331063E-4 0.0 13.521673706597788 0.0 25 1.1848411424238295E-4 6.516626283331063E-4 0.0 13.722800490524232 0.0 26 1.1848411424238295E-4 6.516626283331063E-4 0.0 13.921913044508557 0.0 27 1.1848411424238295E-4 6.516626283331063E-4 0.0 14.145462947055373 0.0 28 1.1848411424238295E-4 6.516626283331063E-4 0.0 14.360363509262495 0.0 29 1.1848411424238295E-4 6.516626283331063E-4 0.0 14.583972653866432 0.0 30 1.1848411424238295E-4 6.516626283331063E-4 0.0 14.910751840946926 0.0 31 1.1848411424238295E-4 6.516626283331063E-4 0.0 15.155569642000248 0.0 32 1.1848411424238295E-4 6.516626283331063E-4 0.0 15.38282217311714 0.0 33 1.1848411424238295E-4 6.516626283331063E-4 0.0 15.598018945609867 0.0 34 1.1848411424238295E-4 6.516626283331063E-4 0.0 15.828470547811301 0.0 35 1.1848411424238295E-4 6.516626283331063E-4 0.0 16.09837736005545 0.0 36 1.1848411424238295E-4 6.516626283331063E-4 0.0 16.333272116540975 0.0 37 1.1848411424238295E-4 6.516626283331063E-4 0.0 16.57803067553718 0.0 38 1.1848411424238295E-4 6.516626283331063E-4 0.0 16.823766728475878 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGATC 25 4.4446788E-5 44.0 21 CGTTTTT 25165 0.0 43.06457 1 CGGTCTA 380 0.0 39.36842 31 TAATGCG 130 0.0 38.923077 1 TCACGAC 375 0.0 38.719997 25 GTTTTTT 28410 0.0 38.71876 2 TACGGGA 1300 0.0 38.246155 4 CCGTAAG 70 0.0 37.714287 1 AGTACGG 585 0.0 37.23077 2 GACGGTC 385 0.0 37.142857 29 TAGGGCG 1390 0.0 36.719425 5 ACTACCG 30 1.3016294E-4 36.666664 35 AACGGGA 1210 0.0 36.545456 4 AGGGCGA 3690 0.0 36.428185 6 ACGGGTA 290 0.0 36.41379 5 ACGGTCT 395 0.0 36.202534 30 GCGTTAG 310 0.0 36.193546 1 TTAGGGA 4655 0.0 36.154675 4 ACGGGAT 1440 0.0 35.75 5 TATACTA 2250 0.0 35.59111 44 >>END_MODULE