##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547219_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2061035 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.358472320945545 31.0 31.0 33.0 30.0 34.0 2 31.749373494385104 31.0 31.0 34.0 30.0 34.0 3 31.866226919969822 31.0 31.0 34.0 30.0 34.0 4 35.56318936844838 37.0 35.0 37.0 33.0 37.0 5 35.46244047286921 37.0 35.0 37.0 33.0 37.0 6 35.48828331396604 37.0 35.0 37.0 33.0 37.0 7 35.95331762924938 37.0 35.0 37.0 35.0 37.0 8 35.942222718197414 37.0 35.0 37.0 35.0 37.0 9 37.656736542562356 39.0 37.0 39.0 35.0 39.0 10 37.04659940272727 39.0 37.0 39.0 33.0 39.0 11 36.83330511126691 39.0 37.0 39.0 32.0 39.0 12 36.44396383370491 39.0 35.0 39.0 32.0 39.0 13 36.32693040147305 39.0 35.0 39.0 32.0 39.0 14 37.42071871656716 40.0 35.0 41.0 32.0 41.0 15 37.56540718619529 40.0 35.0 41.0 32.0 41.0 16 37.60693438005662 40.0 35.0 41.0 32.0 41.0 17 37.510886520607365 39.0 35.0 41.0 32.0 41.0 18 37.42818729424779 39.0 36.0 41.0 32.0 41.0 19 37.36106713374591 39.0 36.0 41.0 32.0 41.0 20 37.158271936187404 39.0 35.0 41.0 32.0 41.0 21 37.04184887689923 39.0 35.0 41.0 32.0 41.0 22 36.98045059884961 39.0 35.0 41.0 32.0 41.0 23 36.87254753073092 38.0 35.0 41.0 31.0 41.0 24 36.80168410531602 38.0 35.0 41.0 31.0 41.0 25 36.60654719594767 38.0 35.0 41.0 31.0 41.0 26 36.51216937121398 38.0 35.0 40.0 31.0 41.0 27 36.42222378562227 38.0 35.0 40.0 31.0 41.0 28 36.45862976611266 38.0 35.0 40.0 31.0 41.0 29 36.32655437680583 38.0 35.0 40.0 30.0 41.0 30 36.273136069984254 38.0 35.0 40.0 30.0 41.0 31 36.129134633812626 38.0 35.0 40.0 30.0 41.0 32 35.888402186280196 38.0 35.0 40.0 29.0 41.0 33 35.70462655898614 38.0 35.0 40.0 29.0 41.0 34 35.53597876794911 38.0 35.0 40.0 27.0 41.0 35 35.24516808302624 38.0 34.0 40.0 26.0 41.0 36 35.08299519416216 38.0 34.0 40.0 25.0 41.0 37 35.02028883546374 38.0 34.0 40.0 25.0 41.0 38 34.97008978498667 38.0 34.0 40.0 25.0 41.0 39 34.8547448248089 37.0 34.0 40.0 24.0 41.0 40 34.76347660277482 37.0 34.0 40.0 24.0 41.0 41 34.73479344115942 37.0 34.0 40.0 24.0 41.0 42 34.5407457903432 37.0 34.0 40.0 23.0 41.0 43 34.53506757527165 37.0 34.0 40.0 24.0 41.0 44 34.267267174016936 36.0 33.0 40.0 23.0 41.0 45 34.151035280817645 36.0 33.0 40.0 23.0 41.0 46 34.12675088001902 36.0 33.0 40.0 23.0 41.0 47 33.999371674910904 36.0 33.0 40.0 23.0 41.0 48 33.94208880489657 35.0 33.0 40.0 23.0 41.0 49 33.89588240859568 35.0 33.0 40.0 23.0 41.0 50 33.358400997557055 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 2.0 12 7.0 13 6.0 14 22.0 15 61.0 16 161.0 17 368.0 18 907.0 19 1768.0 20 3197.0 21 5186.0 22 8044.0 23 11444.0 24 16311.0 25 23954.0 26 33630.0 27 40879.0 28 44010.0 29 47089.0 30 52970.0 31 62404.0 32 76352.0 33 96392.0 34 151952.0 35 225730.0 36 170710.0 37 211663.0 38 303860.0 39 471951.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.70343783584461 22.54605089190625 26.082866132792503 16.66764513945663 2 35.71220284953919 23.93287838391876 26.989740591498933 13.365178175043122 3 29.58382560218531 24.655330938096636 32.26742874332556 13.493414716392493 4 25.487825291661714 27.026033036799475 32.14865346779652 15.337488203742295 5 22.485256194096657 31.316207633543343 30.87094590824513 15.327590264114873 6 19.705633334708047 39.85366575531226 29.183298682458087 11.25740222752161 7 84.1402499229756 3.9639792628460944 9.490231849531911 2.4055389646464036 8 83.48630663719928 3.531478116577351 9.404449706094269 3.5777655401291097 9 78.36164839510246 5.101854165504225 12.37096895491828 4.1655284844750335 10 40.604793222822515 25.819842942987382 17.78203669515559 15.793327139034513 11 32.727488858753006 25.10408605385158 25.83692174077587 16.331503346619538 12 29.416628053380943 21.194593978268202 29.571307619715338 19.817470348635517 13 23.53482594909839 27.38876341255728 30.520296841150195 18.55611379719413 14 20.208341925294814 30.26484266400134 30.466197808382685 19.060617602321166 15 17.991979757743078 22.568515333315542 39.08773989767277 20.35176501126861 16 20.26142205251245 20.08694660692322 37.543418719235724 22.108212621328605 17 19.37026785086134 21.1780488929106 31.9516165421742 27.50006671405386 18 23.182333148151294 22.335525597575977 32.38275914770977 22.099382106562963 19 27.304339809852817 25.89524195367861 26.281504195707495 20.518914040761075 20 28.178124097844044 24.31001899531061 25.72396878267472 21.787888124170625 21 24.715397846227745 27.588371861710257 27.883223720121205 19.813006571940797 22 24.115456554595145 22.902231160557683 26.772810747997973 26.209501536849206 23 21.91903582423394 28.230427916071292 25.33552317161038 24.515013088084384 24 22.25939879720626 25.12043706196159 31.736530432525406 20.883633708306746 25 23.109408622366917 24.705111752105132 29.334048184528648 22.851431440999303 26 20.36981419529508 27.671194327122052 27.80185683406638 24.157134643516486 27 22.055278052046663 24.71733861870371 28.461040205527805 24.76634312372182 28 22.266240020184032 25.340181025552695 32.08150274012814 20.31207621413513 29 22.295545684571103 23.543753502487828 31.155705749781053 23.004995063160013 30 24.305312622056395 24.068392822053 30.305792963244194 21.320501592646412 31 27.49977559818247 23.714492961060827 26.275827436215298 22.509904004541408 32 28.640416101618847 23.841031326493727 25.93677448466426 21.581778087223167 33 26.444140929193345 23.77164871047799 26.376699085653566 23.4075112746751 34 24.906855050981665 25.589570288714164 27.610884822431448 21.89268983787272 35 23.732930299582492 24.694291945551626 29.58343744769012 21.989340307175766 36 29.06656121802881 24.89128035186205 24.86270247715347 21.179455952955674 37 24.185615479601267 28.258860232844178 26.185824112642436 21.369700174912122 38 25.996938431419164 27.765855504637234 24.682841387943437 21.554364676000166 39 23.65879279100064 27.847270910003953 24.412200666170154 24.081735632825254 40 24.97589803181411 24.520689847576584 27.85707181100758 22.64634030960173 41 22.049407215306875 24.35679161198136 27.619521259949494 25.974279912762277 42 24.610159458718556 26.35001346410905 24.45970107251939 24.580126004653003 43 23.52609247295655 25.001855863680138 27.044664452568735 24.427387210794578 44 24.555429674896352 26.37286606001354 27.246553309380968 21.825150955709148 45 21.531318002848085 27.039230289636034 27.71374576365758 23.715705943858303 46 25.533530483470685 25.438141516277017 26.877758019635767 22.150569980616535 47 23.568935025363473 26.233664154174967 26.705465943081997 23.49193487737957 48 24.487454118925687 24.258928159880835 27.33878852130119 23.91482919989229 49 24.45150130880844 23.77038720836861 27.43966017073946 24.338451312083492 50 22.480743898090036 24.706664370085903 28.89048463514691 23.922107096677156 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2585.0 1 2878.5 2 3172.0 3 18513.5 4 33855.0 5 22890.0 6 11925.0 7 12305.5 8 12686.0 9 13125.5 10 13565.0 11 13634.0 12 13703.0 13 13117.0 14 12531.0 15 11810.0 16 11089.0 17 10541.5 18 9994.0 19 9582.0 20 9170.0 21 9070.5 22 8971.0 23 9350.5 24 9730.0 25 9776.0 26 9822.0 27 11449.0 28 13076.0 29 15334.5 30 17593.0 31 21219.5 32 24846.0 33 27062.5 34 29279.0 35 34909.5 36 40540.0 37 45567.0 38 50594.0 39 58685.0 40 66776.0 41 79474.5 42 92173.0 43 110029.0 44 127885.0 45 136475.0 46 145065.0 47 161354.5 48 177644.0 49 182497.0 50 187350.0 51 168600.0 52 149850.0 53 135406.0 54 120962.0 55 113829.5 56 106697.0 57 107686.5 58 108676.0 59 103181.5 60 97687.0 61 91105.5 62 84524.0 63 78334.0 64 72144.0 65 61639.0 66 51134.0 67 45168.0 68 39202.0 69 36103.0 70 33004.0 71 29515.0 72 26026.0 73 21382.5 74 16739.0 75 12954.5 76 9170.0 77 6827.0 78 4484.0 79 3517.5 80 2551.0 81 2019.5 82 1488.0 83 1023.0 84 558.0 85 419.5 86 281.0 87 220.0 88 159.0 89 101.0 90 43.0 91 33.5 92 24.0 93 17.0 94 10.0 95 6.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2061035.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.731965327197415 #Duplication Level Percentage of deduplicated Percentage of total 1 76.8130285032721 19.76550186123224 2 6.792306019371451 3.495587659643609 3 2.6911038885964067 2.0774217585974664 4 1.5884710010474072 1.6349792288884182 5 1.1455156206775865 1.473818411651934 6 0.8454012821911163 1.3052301888546023 7 0.6830111501813925 1.230265346418977 8 0.5901983058170459 1.2149569873163906 9 0.5368235084795356 1.243217151631789 >10 7.212423063945277 43.435250020013136 >50 1.0070941391341215 16.840236044881443 >100 0.08741778533405326 3.4773856697546797 >500 0.004930237651784009 0.9280153120316683 >1k 0.0020858697757547735 0.7991500489223757 >5k 0.0 0.0 >10k+ 1.8962452506861576E-4 1.078984310161222 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22113 1.0729075440252107 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 2853 0.1384255968481855 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.059581715012117696 0.0 2 0.0 0.0 0.0 0.21037973639457846 0.0 3 0.0 0.0 0.0 0.42551436535527054 0.0 4 0.0 0.0 0.0 0.6156615486879166 0.0 5 0.0 0.0 0.0 0.9353552947912093 0.0 6 0.0 0.0 0.0 1.7925459781129385 0.0 7 0.0 0.0 0.0 2.335040404456984 0.0 8 0.0 0.0 0.0 3.998185377734973 0.0 9 0.0 0.0 0.0 4.963816723151233 0.0 10 0.0 0.0 0.0 6.1767510013172995 0.0 11 0.0 0.0 0.0 6.696780986252053 0.0 12 4.851931189911865E-5 0.0 0.0 7.168049062728192 0.0 13 4.851931189911865E-5 0.0 0.0 7.457515277518334 0.0 14 4.851931189911865E-5 0.0 0.0 7.60530510156305 0.0 15 4.851931189911865E-5 0.0 0.0 7.713842802281378 0.0 16 9.70386237982373E-5 0.0 0.0 7.880409600031053 0.0 17 9.70386237982373E-5 0.0 0.0 8.027131999213987 0.0 18 9.70386237982373E-5 0.0 0.0 8.310387742081042 0.0 19 9.70386237982373E-5 0.0 0.0 8.421642524265721 0.0 20 9.70386237982373E-5 0.0 0.0 8.580349193487738 0.0 21 9.70386237982373E-5 0.0 0.0 8.71955109932631 0.0 22 9.70386237982373E-5 0.0 0.0 8.856327039569925 0.0 23 9.70386237982373E-5 0.0 0.0 9.02003119791755 0.0 24 9.70386237982373E-5 0.0 0.0 9.15113037866897 0.0 25 9.70386237982373E-5 0.0 0.0 9.272622735664363 0.0 26 9.70386237982373E-5 0.0 0.0 9.384362710968032 0.0 27 9.70386237982373E-5 0.0 0.0 9.536179637900375 0.0 28 9.70386237982373E-5 0.0 0.0 9.654712316869922 0.0 29 9.70386237982373E-5 0.0 0.0 9.77649578973671 0.0 30 9.70386237982373E-5 0.0 0.0 9.981198766639091 0.0 31 9.70386237982373E-5 0.0 0.0 10.119333247615883 0.0 32 9.70386237982373E-5 0.0 0.0 10.280465882432855 0.0 33 9.70386237982373E-5 0.0 0.0 10.419279633776235 0.0 34 9.70386237982373E-5 0.0 0.0 10.552804780122608 0.0 35 9.70386237982373E-5 0.0 0.0 10.702632415267086 0.0 36 1.4555793569735593E-4 0.0 0.0 10.833343441523313 0.0 37 1.4555793569735593E-4 0.0 0.0 10.983656269786781 0.0 38 1.4555793569735593E-4 0.0 0.0 11.14289665143969 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 12465 0.0 42.25271 1 TCACGAC 475 0.0 41.684208 25 TAGCCGT 325 0.0 41.29231 44 CGACGGT 495 0.0 40.88889 28 CGGTCTA 500 0.0 40.48 31 TCGTTAG 60 3.6379788E-12 40.333332 1 TACCCGT 40 4.1266685E-7 38.5 36 CATATGC 1935 0.0 38.20155 33 CACGACG 525 0.0 38.133335 26 TACGGGA 435 0.0 37.931038 4 CGACGTT 335 0.0 37.432835 27 TCGACGT 335 0.0 37.432835 26 GTTTTTT 14590 0.0 37.244686 2 TTGATCC 2020 0.0 37.138615 17 CTCACGA 535 0.0 37.00935 24 TCTCACG 535 0.0 37.00935 23 GTAGCAT 2020 0.0 36.811882 29 GTTGATC 2055 0.0 36.720196 16 GGTACCT 2135 0.0 36.683838 8 CGCGTAG 30 1.3014534E-4 36.666664 1 >>END_MODULE