##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547218_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 131423 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.371243998386888 31.0 31.0 33.0 30.0 34.0 2 31.767803200353057 31.0 31.0 34.0 30.0 34.0 3 31.864521430799783 31.0 31.0 34.0 30.0 34.0 4 35.58528568058863 37.0 35.0 37.0 33.0 37.0 5 35.4681372362524 37.0 35.0 37.0 33.0 37.0 6 35.49328504143111 37.0 35.0 37.0 33.0 37.0 7 35.99532806282006 37.0 35.0 37.0 35.0 37.0 8 35.99788469293807 37.0 35.0 37.0 35.0 37.0 9 37.71478356147706 39.0 37.0 39.0 35.0 39.0 10 37.039954954612206 39.0 37.0 39.0 33.0 39.0 11 36.821256553266934 39.0 37.0 39.0 32.0 39.0 12 36.493452439831685 39.0 35.0 39.0 32.0 39.0 13 36.4048530318133 39.0 35.0 39.0 32.0 39.0 14 37.51577729925508 40.0 36.0 41.0 32.0 41.0 15 37.658248556188795 40.0 36.0 41.0 32.0 41.0 16 37.679873385937015 40.0 36.0 41.0 33.0 41.0 17 37.57343843923819 40.0 36.0 41.0 32.0 41.0 18 37.42767247742024 39.0 36.0 41.0 32.0 41.0 19 37.31884829900398 39.0 36.0 41.0 32.0 41.0 20 37.071075839084486 39.0 35.0 41.0 32.0 41.0 21 36.9745782701658 38.0 35.0 41.0 32.0 41.0 22 36.88147432336805 38.0 35.0 41.0 32.0 41.0 23 36.789131278391146 38.0 35.0 41.0 31.0 41.0 24 36.70341568827374 38.0 35.0 41.0 31.0 41.0 25 36.53446504797486 38.0 35.0 40.0 31.0 41.0 26 36.40560632461594 38.0 35.0 40.0 31.0 41.0 27 36.29929312220844 38.0 35.0 40.0 31.0 41.0 28 36.330048773806716 38.0 35.0 40.0 31.0 41.0 29 36.255860846275006 38.0 35.0 40.0 30.0 41.0 30 36.15139663529215 38.0 35.0 40.0 30.0 41.0 31 35.97736317083007 38.0 35.0 40.0 30.0 41.0 32 35.57647443750333 38.0 35.0 40.0 27.0 41.0 33 35.33686645412143 38.0 34.0 40.0 25.0 41.0 34 35.04297573484094 38.0 34.0 40.0 24.0 41.0 35 34.759912648470966 38.0 34.0 40.0 23.0 41.0 36 34.58606180044589 38.0 34.0 40.0 22.0 41.0 37 34.51977964283269 38.0 34.0 40.0 22.0 41.0 38 34.42888992033358 38.0 34.0 40.0 21.0 41.0 39 34.33132708886573 38.0 34.0 40.0 21.0 41.0 40 34.21529717020613 37.0 33.0 40.0 20.0 41.0 41 34.1861241943952 37.0 33.0 40.0 20.0 41.0 42 33.988061450431054 37.0 33.0 40.0 18.0 41.0 43 33.99247468099191 37.0 33.0 40.0 19.0 41.0 44 33.74133903502431 37.0 33.0 40.0 18.0 41.0 45 33.667272851783935 37.0 33.0 40.0 18.0 41.0 46 33.65703872229366 37.0 33.0 40.0 18.0 41.0 47 33.57078289188346 36.0 33.0 40.0 18.0 41.0 48 33.49593297976762 36.0 33.0 40.0 18.0 41.0 49 33.46787092061511 36.0 33.0 40.0 18.0 41.0 50 32.945329204172786 35.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 2.0 15 3.0 16 10.0 17 23.0 18 61.0 19 128.0 20 247.0 21 426.0 22 582.0 23 819.0 24 1219.0 25 1942.0 26 2852.0 27 3345.0 28 3297.0 29 3201.0 30 3446.0 31 4021.0 32 4696.0 33 6009.0 34 9091.0 35 13321.0 36 10113.0 37 12534.0 38 18427.0 39 31607.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.331829284067474 23.020323687634583 26.872008704716833 19.77583832358111 2 35.850650190605904 24.000365232874003 27.31485356444458 12.834131012075511 3 26.517428456206293 24.380055241472192 36.132183864315984 12.970332438005524 4 23.6024135805757 26.7434162969952 35.94271931092731 13.711450811501791 5 21.30601188528644 30.270196236579594 34.938328907421074 13.485462970712888 6 18.569808937552786 39.181878362234926 31.867329158518675 10.380983541693615 7 82.1378297558266 3.438515328367181 12.513030443681853 1.910624472124362 8 82.3775138293906 2.8655562572761237 12.077033700341646 2.6798962129916375 9 76.99869885788637 5.063801617677271 14.41756770123951 3.5199318231968526 10 37.08102843490104 28.851875242537457 20.79772946896662 13.26936685359488 11 30.21160679637506 24.304725961209225 30.288457880279708 15.195209362136003 12 27.485295572312307 21.242096132336044 33.042161569892635 18.230446725459014 13 21.68722369752631 26.725154653295085 34.21090676669989 17.376714882478712 14 18.16120465976275 29.249065993014923 34.30982400340884 18.27990534381349 15 17.471066708262633 23.513388067537647 41.52241236313278 17.493132861066936 16 19.530067035450415 21.94060400386538 39.916148619343645 18.613180341340556 17 19.299513783736487 22.162787335550092 34.33341195985482 24.2042869208586 18 21.76635748689347 23.690678191792912 34.39352320370103 20.149441117612593 19 24.24309291372134 26.611780281990217 30.254217298341995 18.89090950594645 20 25.85011755933132 24.331357524938557 29.814416045897595 20.00410886983253 21 23.129893549835266 26.99679660333427 31.0440333883719 18.829276458458565 22 22.12930765543322 23.651111297109335 31.193170145256154 23.026410902201288 23 20.88066776743797 27.423662524824422 29.901158853473138 21.794510854264473 24 21.293837456153035 24.545931838414887 34.496244949514164 19.663985755917913 25 21.015347389726305 24.991059403605153 32.95085335139207 21.042739855276473 26 18.87340876406717 28.22032673124187 31.946462947885834 20.959801556805125 27 20.526087518927433 25.248244219048416 31.98298623528606 22.242682026738088 28 19.91203974951112 26.573735190948312 34.680383190156974 18.833841869383594 29 20.470541686006253 23.931884068998578 34.10590231542424 21.491671929570927 30 21.229160801381795 24.767354268278762 33.17684119218097 20.826643738158467 31 24.178416258950108 24.36635900869711 29.24145697480654 22.213767757546243 32 24.855618879495978 24.789420421083065 29.471249324699635 20.88371137472132 33 23.180113070010577 24.95757972348828 28.06053734886588 23.801769857635268 34 20.29477336539266 26.61254118381105 30.21312860001674 22.879556850779544 35 20.429452987681 25.580758314754647 30.129429399724554 23.8603592978398 36 24.191351589904357 27.124628109235065 26.845377140987498 21.83864315987308 37 22.766943381295512 27.317136269907095 29.022317250405184 20.893603098392212 38 22.849120777946023 28.673063314640512 26.89255305387946 21.585262853534008 39 23.727962381013977 26.90853199211706 27.084300312730647 22.279205314138316 40 24.357228186847053 25.30759456107379 28.401421364601326 21.933755887477837 41 21.356992307282592 25.127260829535164 28.839700813404047 24.676046049778197 42 23.18163487365225 26.668087016732233 26.518189358027133 23.63208875158838 43 22.3408383616262 25.879031828523164 28.046080214269953 23.734049595580682 44 22.738029112103668 27.995099792273802 27.69149996575942 21.575371129863115 45 21.140135288343746 28.030862177853194 28.064341857970064 22.764660675833 46 23.387078365278526 27.973794541290335 27.085822116372327 21.55330497705881 47 22.679439671899136 25.254331433615118 28.91655189730869 23.149676997177053 48 23.482951994704123 24.10689148779133 29.079384886968036 23.33077163053651 49 22.920645549104798 23.97373366914467 28.518600245010383 24.587020536740145 50 20.602177701011236 25.835660424735394 29.935399435410847 23.626762438842515 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 140.0 1 166.5 2 193.0 3 1463.0 4 2733.0 5 1941.5 6 1150.0 7 1144.5 8 1139.0 9 1195.5 10 1252.0 11 1271.5 12 1291.0 13 1280.5 14 1270.0 15 1175.5 16 1081.0 17 1064.5 18 1048.0 19 944.5 20 841.0 21 836.0 22 831.0 23 816.0 24 801.0 25 840.0 26 879.0 27 993.0 28 1107.0 29 1333.5 30 1560.0 31 1743.5 32 1927.0 33 2254.5 34 2582.0 35 3079.5 36 3577.0 37 3938.5 38 4300.0 39 4837.5 40 5375.0 41 6187.0 42 6999.0 43 7723.5 44 8448.0 45 8920.0 46 9392.0 47 9689.5 48 9987.0 49 10679.0 50 11371.0 51 10988.0 52 10605.0 53 9428.5 54 8252.0 55 7270.0 56 6288.0 57 5921.5 58 5555.0 59 5200.0 60 4845.0 61 4514.5 62 4184.0 63 3788.0 64 3392.0 65 2779.5 66 2167.0 67 1815.5 68 1464.0 69 1306.0 70 1148.0 71 1031.5 72 915.0 73 745.5 74 576.0 75 450.5 76 325.0 77 277.5 78 230.0 79 160.5 80 91.0 81 81.5 82 72.0 83 50.0 84 28.0 85 19.0 86 10.0 87 5.5 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 131423.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.30474878826385 #Duplication Level Percentage of deduplicated Percentage of total 1 74.34282486147336 47.06253852065468 2 13.120665408608485 16.612008552536466 3 6.037477312883878 11.466029538208684 4 2.8919311994422876 7.3229191237454625 5 1.556546510090508 4.926839289926421 6 0.848588290443165 3.223180113070011 7 0.46275707056744836 2.050630407158564 8 0.25481688041636114 1.2904894881413451 9 0.12981237304229717 0.7395965698545917 >10 0.3389545296104427 3.2954657860496264 >50 0.010817697753524766 0.47023732527791934 >100 0.003605899251174922 0.2997953174101946 >500 0.0 0.0 >1k 0.0012019664170583074 1.2402699679660334 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1630 1.2402699679660334 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT 142 0.10804805855900412 No Hit CGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT 142 0.10804805855900412 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04337140378776926 0.0 2 0.0 0.0 0.0 0.1673984005843726 0.0 3 0.0 0.0 0.0 0.41240878689422705 0.0 4 0.0 0.0 0.0 0.5904598129703325 0.0 5 0.0 0.0 0.0 0.9244957123182396 0.0 6 0.0 0.0 0.0 1.7827929662235682 0.0 7 0.0 0.0 0.0 2.313902437168532 0.0 8 0.0 0.0 0.0 3.7489632712691083 0.0 9 0.0 0.0 0.0 4.710743172808413 0.0 10 0.0 0.0 0.0 5.83992147493209 0.0 11 0.0 0.0 0.0 6.299506174718276 0.0 12 0.0 0.0 0.0 6.774308910921224 0.0 13 0.0 0.0 0.0 7.0862786574648275 0.0 14 0.0 0.0 0.0 7.260525174436743 0.0 15 0.0 0.0 0.0 7.3952047967250785 0.0 16 0.0 0.0 0.0 7.565646804592803 0.0 17 0.0 0.0 0.0 7.765763983473213 0.0 18 0.0 0.0 0.0 8.086864551866872 0.0 19 0.0 0.0 0.0 8.207847941380123 0.0 20 0.0 0.0 0.0 8.391986182022933 0.0 21 0.0 0.0 0.0 8.55405826986144 0.0 22 0.0 0.0 0.0 8.746566430533468 0.0 23 0.0 0.0 0.0 8.929182867534601 0.0 24 0.0 0.0 0.0 9.076797820777186 0.0 25 0.0 0.0 0.0 9.197020308469599 0.0 26 0.0 0.0 0.0 9.350722476278886 0.0 27 0.0 0.0 0.0 9.541708833309238 0.0 28 0.0 0.0 0.0 9.704541822968583 0.0 29 0.0 0.0 0.0 9.871179321732116 0.0 30 0.0 0.0 0.0 10.091079947954315 0.0 31 0.0 0.0 0.0 10.244782115763604 0.0 32 0.0 0.0 0.0 10.427398552764737 0.0 33 0.0 0.0 0.0 10.635124749853526 0.0 34 0.0 0.0 0.0 10.781217899454433 0.0 35 0.0 0.0 0.0 10.95470351460551 0.0 36 0.0 0.0 0.0 11.12362371883156 0.0 37 0.0 0.0 0.0 11.28721761031174 0.0 38 0.0 0.0 0.0 11.515488156563158 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGTG 20 7.831021E-4 44.0 5 ACCGGCC 25 4.4212826E-5 44.0 21 CATATGC 50 2.7284841E-11 44.0 33 GGGTCTA 20 7.831021E-4 44.0 7 GCGCGAC 40 8.216375E-9 44.0 9 CGACCTC 40 8.216375E-9 44.0 12 AGGGTGC 25 4.4212826E-5 44.0 6 AGGGTCT 35 1.4330362E-7 44.0 6 GTAGGGT 40 8.216375E-9 44.0 4 TACGGGC 20 7.831021E-4 44.0 4 GTTGTAG 25 4.4212826E-5 44.0 1 CTACGGG 20 7.831021E-4 44.0 3 AACGCCA 25 4.4212826E-5 44.0 15 TAGGGTC 25 4.4212826E-5 44.0 5 CGGGATC 20 7.831021E-4 44.0 6 TTAGTAG 25 4.4212826E-5 44.0 1 GGCGCGA 40 8.216375E-9 44.0 8 ACCCGCT 35 1.4330362E-7 44.0 34 GACGAGG 25 4.4212826E-5 44.0 2 AGGGCGC 40 8.216375E-9 44.0 6 >>END_MODULE