##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547217_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2326718 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.361352772445994 31.0 31.0 33.0 30.0 34.0 2 31.753108455773326 31.0 31.0 34.0 30.0 34.0 3 31.881211646619832 31.0 31.0 34.0 30.0 34.0 4 35.55404307698655 37.0 35.0 37.0 33.0 37.0 5 35.430275177309845 37.0 35.0 37.0 33.0 37.0 6 35.46440909469906 37.0 35.0 37.0 33.0 37.0 7 35.957826002119724 37.0 35.0 37.0 35.0 37.0 8 35.95802757360368 37.0 35.0 37.0 35.0 37.0 9 37.67481104285092 39.0 37.0 39.0 35.0 39.0 10 37.04843560758115 39.0 37.0 39.0 33.0 39.0 11 36.77485582696313 39.0 35.0 39.0 32.0 39.0 12 36.027474751989715 37.0 35.0 39.0 32.0 39.0 13 35.675033244252205 37.0 35.0 39.0 31.0 39.0 14 36.67581202363157 38.0 35.0 41.0 31.0 41.0 15 36.98403416314311 38.0 35.0 41.0 32.0 41.0 16 37.10894917218159 38.0 35.0 41.0 32.0 41.0 17 37.05675032384672 38.0 35.0 41.0 32.0 41.0 18 37.02785683525034 38.0 35.0 41.0 32.0 41.0 19 36.98006720195571 38.0 35.0 41.0 32.0 41.0 20 36.80742015147517 38.0 35.0 41.0 32.0 41.0 21 36.67340047225319 38.0 35.0 41.0 31.0 41.0 22 36.5849729103398 38.0 35.0 40.0 31.0 41.0 23 36.51767038377663 38.0 35.0 40.0 31.0 41.0 24 36.432703920286 38.0 35.0 40.0 31.0 41.0 25 36.24991769522563 38.0 35.0 40.0 31.0 41.0 26 36.0950510547475 37.0 35.0 40.0 31.0 41.0 27 35.996118137221615 37.0 35.0 40.0 30.0 41.0 28 36.075829559061305 37.0 35.0 40.0 30.0 41.0 29 36.01917980606159 37.0 35.0 40.0 30.0 41.0 30 35.98759755157264 37.0 35.0 40.0 30.0 41.0 31 35.864181220070506 37.0 35.0 40.0 30.0 41.0 32 35.58515041358687 37.0 34.0 40.0 30.0 41.0 33 35.53556382853444 37.0 34.0 40.0 29.0 41.0 34 35.43403583932389 37.0 34.0 40.0 29.0 41.0 35 35.30328385304966 37.0 34.0 40.0 29.0 41.0 36 35.11956541359976 37.0 34.0 40.0 27.0 41.0 37 35.071617187815626 37.0 34.0 40.0 27.0 41.0 38 35.02006216481757 37.0 34.0 40.0 27.0 41.0 39 34.93732931966831 36.0 34.0 40.0 27.0 41.0 40 34.80799907853036 36.0 34.0 40.0 26.0 41.0 41 34.8126567121585 36.0 34.0 40.0 26.0 41.0 42 34.609658325589955 36.0 34.0 40.0 25.0 41.0 43 34.6356090424366 36.0 34.0 40.0 26.0 41.0 44 34.40330843703448 35.0 34.0 40.0 25.0 41.0 45 34.3168867047919 35.0 34.0 40.0 24.0 41.0 46 34.31313850668624 35.0 34.0 40.0 25.0 41.0 47 34.199967507880196 35.0 33.0 40.0 24.0 41.0 48 34.16706021099248 35.0 33.0 40.0 24.0 41.0 49 34.18007296114097 35.0 34.0 40.0 25.0 41.0 50 33.614338738085145 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 8.0 13 10.0 14 27.0 15 40.0 16 136.0 17 434.0 18 934.0 19 1848.0 20 3405.0 21 5486.0 22 8392.0 23 12309.0 24 17682.0 25 24833.0 26 33038.0 27 40594.0 28 46141.0 29 52202.0 30 61660.0 31 75470.0 32 93516.0 33 120713.0 34 204665.0 35 351971.0 36 173708.0 37 209865.0 38 297338.0 39 490291.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.17566546526051 25.078243259389403 28.521247525484394 14.22484374986569 2 31.363448428215197 26.327814543919803 29.343134836280115 12.965602191584885 3 28.45187942844814 26.641088434438554 31.082365804536693 13.824666332576616 4 25.752798577223366 28.747317036271692 31.15500030515086 14.344884081354078 5 22.70322402628939 32.79439106930879 29.93233387114382 14.570051033258006 6 19.4438260244688 41.944146217977426 27.211677564707028 11.400350192846748 7 85.85432355790431 4.738434137699541 7.189612148958319 2.2176301554378313 8 85.75035737033883 3.9900409074069136 6.5998114081723696 3.6597903140818957 9 80.52050141014081 5.839770870384808 9.712694017925678 3.927033701548705 10 47.66310313497381 25.381631981185514 13.815296911787334 13.139967972053338 11 42.66748269450788 21.961234666169258 21.31611995953098 14.055162679791877 12 37.783177849657754 21.116310614350343 24.317128246740687 16.783383289251212 13 22.14741967011043 36.32679164385198 26.11915152588324 15.406637160154347 14 16.48300309706634 38.86534595081999 27.05978979833396 17.5918611537797 15 14.90550208491102 22.697206967066915 45.60152970837033 16.795761239651732 16 16.22744999608891 18.99727427217222 43.52796514231635 21.247310589422526 17 16.589848877259726 20.528314991331136 28.864047985187717 34.01778814622142 18 22.02256569124406 22.897317165208676 32.47557288850647 22.604544255040793 19 27.52465060226465 26.71307825013603 24.472282416691666 21.289988730907655 20 29.928809593599226 24.202460289558083 23.44160315087604 22.427126965966654 21 22.9751091451564 30.25226950580173 25.171851509293347 21.60076983974852 22 22.255125030192744 25.720650289377573 23.41199062370257 28.612234056727115 23 19.708060882324375 31.40934999428379 23.02565244262519 25.85693668076664 24 20.89621518379107 24.687865052834077 34.58691599067872 19.829003772696133 25 19.42212163227344 25.88366961531221 31.51954813604399 23.174660616370353 26 17.91235551536542 32.48795083890699 26.732074965681274 22.867618680046313 27 20.465995449384067 30.457193351321475 26.54808189045686 22.5287293088376 28 18.24432526846829 27.83207934953871 34.37588912794761 19.547706254045398 29 17.868602899019134 24.89850510461517 33.04083262346361 24.19205937290209 30 20.716520008011287 29.11405679588158 28.44612024319234 21.723302952914793 31 27.94562985286571 26.238117382510474 21.71909101145906 24.09716175316476 32 27.861219107773266 28.028063564213628 22.631492084558595 21.479225243454515 33 25.61393344616752 26.70847949773028 23.232854174850583 24.444732881251614 34 19.312482217441048 27.12902895838688 26.108406777271675 27.4500820469004 35 20.394865213575518 24.265854306366307 29.7317079250687 25.60757255498947 36 27.512315630858573 23.933239868346746 25.622572224051215 22.931872276743466 37 22.48764139014698 27.943137071187827 28.491506061327588 21.077715477337605 38 21.63304706457766 28.2435172633727 25.918439621819232 24.20499605023041 39 21.228872600805083 28.223145220005176 27.368851747396977 23.179130431792768 40 23.97772312759862 24.093852370592398 27.76026144981902 24.16816305198997 41 18.844097135965768 22.78965478412081 28.63741974747262 29.728828332440806 42 23.296162233669914 25.79870014329197 24.758092729759255 26.14704489327886 43 22.86125778886827 24.95188501571742 26.838276060957966 25.348581134456342 44 21.792671049951046 28.529542471412523 26.993645125881176 22.684141352755255 45 19.130208301994482 31.351973036698045 25.198627422833365 24.319191238474108 46 23.75062212094461 28.924562409368043 26.033021621012946 21.2917938486744 47 23.258598592523892 25.19793975892222 26.95401849300173 24.589443155552154 48 23.40524292157451 22.405078741815725 28.815438742469006 25.374239594140757 49 21.982939058364614 21.855334423853687 29.75607701491973 26.405649502861973 50 20.455465595744734 27.420598456710266 28.172086174603024 23.951849772941973 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3303.0 1 3269.5 2 3236.0 3 11155.0 4 19074.0 5 13712.5 6 8351.0 7 8893.0 8 9435.0 9 10226.0 10 11017.0 11 11198.0 12 11379.0 13 11205.5 14 11032.0 15 10567.5 16 10103.0 17 9544.0 18 8985.0 19 8939.5 20 8894.0 21 8350.0 22 7806.0 23 8143.0 24 8480.0 25 9155.5 26 9831.0 27 11799.0 28 13767.0 29 16751.5 30 19736.0 31 22763.0 32 25790.0 33 29911.5 34 34033.0 35 39959.5 36 45886.0 37 49472.0 38 53058.0 39 70758.5 40 88459.0 41 121109.5 42 153760.0 43 181596.5 44 209433.0 45 222056.0 46 234679.0 47 234831.0 48 234983.0 49 231486.0 50 227989.0 51 201835.5 52 175682.0 53 151852.0 54 128022.0 55 117333.0 56 106644.0 57 101460.5 58 96277.0 59 92009.5 60 87742.0 61 81569.5 62 75397.0 63 67091.0 64 58785.0 65 48457.0 66 38129.0 67 32944.0 68 27759.0 69 24436.0 70 21113.0 71 18470.0 72 15827.0 73 12748.5 74 9670.0 75 7810.0 76 5950.0 77 4773.5 78 3597.0 79 2729.5 80 1862.0 81 1371.5 82 881.0 83 679.5 84 478.0 85 356.0 86 234.0 87 175.5 88 117.0 89 66.5 90 16.0 91 18.5 92 21.0 93 13.5 94 6.0 95 7.5 96 9.0 97 5.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2326718.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.130490593704437 #Duplication Level Percentage of deduplicated Percentage of total 1 79.26148158744729 17.540954727140797 2 8.106168805379104 3.5878698499684516 3 2.7295663949029945 1.8121993028187733 4 1.39851813788788 1.2379956998261106 5 0.9066619962157957 1.0032437389461477 6 0.5931538185140154 0.7876071000746572 7 0.453119610356468 0.7019431492371784 8 0.36794744896413656 0.6514286046622693 9 0.3041368794048638 0.6057628513981163 >10 3.4974090018565054 18.159318288503094 >50 1.487540811925045 23.905179501168934 >100 0.8868691057622639 27.80818744403008 >500 0.00469035876863202 0.692345603870768 >1k 0.0025406109996756777 0.9795254395592925 >5k 0.0 0.0 >10k+ 1.954316153596675E-4 0.526438698795289 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12172 0.5231403203998077 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4946 0.21257410653117395 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2733 0.11746159182161311 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.086688631798095 0.0 2 0.0 0.0 0.0 0.3331301859529174 0.0 3 0.0 0.0 0.0 0.5435123637673324 0.0 4 0.0 0.0 0.0 0.8399814674575947 0.0 5 0.0 0.0 0.0 1.3925194200586406 0.0 6 0.0 0.0 0.0 2.502494930627605 0.0 7 0.0 0.0 0.0 3.1981099557402315 0.0 8 0.0 0.0 0.0 5.157608270533859 0.0 9 0.0 0.0 0.0 6.311981082365804 0.0 10 0.0 0.0 0.0 7.854153361086302 0.0 11 0.0 0.0 0.0 8.63203018156906 0.0 12 0.0 0.0 0.0 9.44579446241444 0.0 13 0.0 0.0 0.0 9.842662497131153 0.0 14 0.0 0.0 0.0 10.011741861282717 0.0 15 0.0 0.0 0.0 10.164747081511383 0.0 16 0.0 0.0 0.0 10.468092824313045 0.0 17 0.0 0.0 0.0 10.769461533370182 0.0 18 0.0 0.0 0.0 11.333259982516145 0.0 19 0.0 0.0 0.0 11.516264540868296 0.0 20 0.0 0.0 0.0 11.759998418373005 0.0 21 0.0 0.0 0.0 11.981211302787875 0.0 22 0.0 0.0 0.0 12.201306733347144 0.0 23 0.0 0.0 0.0 12.466873940030549 0.0 24 0.0 0.0 0.0 12.675880790022685 0.0 25 0.0 0.0 0.0 12.829100905223582 0.0 26 0.0 0.0 0.0 12.987607436741367 0.0 27 4.2978994446254334E-5 0.0 0.0 13.159523414526385 0.0 28 4.2978994446254334E-5 4.2978994446254334E-5 0.0 13.319405273866451 0.0 29 4.2978994446254334E-5 4.2978994446254334E-5 0.0 13.488398680029123 0.0 30 4.2978994446254334E-5 4.2978994446254334E-5 0.0 13.751902894979107 0.0 31 4.2978994446254334E-5 4.2978994446254334E-5 0.0 13.941956008420444 0.0 32 4.2978994446254334E-5 4.2978994446254334E-5 0.0 14.109574086760837 0.0 33 4.2978994446254334E-5 4.2978994446254334E-5 0.0 14.280372610690252 0.0 34 8.595798889250867E-5 4.2978994446254334E-5 0.0 14.458047773731067 0.0 35 8.595798889250867E-5 4.2978994446254334E-5 0.0 14.66477673701755 0.0 36 8.595798889250867E-5 4.2978994446254334E-5 0.0 14.83574717692475 0.0 37 8.595798889250867E-5 4.2978994446254334E-5 0.0 15.01037083135988 0.0 38 8.595798889250867E-5 4.2978994446254334E-5 0.0 15.185510233728367 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTC 20 7.8581466E-4 44.0 40 CTATCGT 25 4.4442502E-5 44.0 13 TAGACGT 25 4.4442502E-5 44.0 39 GCACGAC 20 7.8581466E-4 44.0 26 TACGACT 20 7.8581466E-4 44.0 36 TCTAACG 30 2.528841E-6 44.0 1 CGTACCA 25 4.4442502E-5 44.0 25 CGCACGA 30 2.528841E-6 44.0 39 TCGAACA 20 7.8581466E-4 44.0 40 CGGTCTA 405 0.0 42.37037 31 CGTTTTT 7920 0.0 41.944443 1 CACGACG 415 0.0 41.879517 26 CTCACGA 430 0.0 40.418602 24 TACGGGT 225 0.0 40.08889 4 CATATGC 1270 0.0 39.842518 33 ACGTTAG 100 0.0 39.600002 1 ACGGGTA 345 0.0 39.536232 5 ACGGTCT 440 0.0 39.000004 30 TAGCATA 1300 0.0 38.923077 30 GTTGATC 1335 0.0 38.72659 16 >>END_MODULE