##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547216_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2471603 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.557486780846276 31.0 30.0 31.0 27.0 33.0 2 30.88334777065734 31.0 31.0 33.0 28.0 34.0 3 31.06786729098484 31.0 31.0 34.0 28.0 34.0 4 34.88904528761294 35.0 35.0 37.0 32.0 37.0 5 34.67107500678709 35.0 35.0 37.0 32.0 37.0 6 34.70693351642638 35.0 35.0 37.0 31.0 37.0 7 35.36197560854231 35.0 35.0 37.0 33.0 37.0 8 34.34282771140835 35.0 35.0 37.0 32.0 37.0 9 36.44379740597499 39.0 37.0 39.0 32.0 39.0 10 35.82820177836004 37.0 35.0 39.0 30.0 39.0 11 35.569173123677224 37.0 35.0 39.0 30.0 39.0 12 34.984714373627156 37.0 34.0 39.0 30.0 39.0 13 34.66373118983915 37.0 33.0 39.0 27.0 39.0 14 35.53119210488092 38.0 33.0 40.0 27.0 41.0 15 35.84084539466897 38.0 33.0 40.0 29.0 41.0 16 35.99355802691613 38.0 34.0 40.0 30.0 41.0 17 35.91454493298479 38.0 34.0 40.0 29.0 41.0 18 35.8501466457194 37.0 34.0 40.0 29.0 41.0 19 35.835866035119714 37.0 34.0 40.0 29.0 41.0 20 35.68912725870619 37.0 34.0 40.0 29.0 41.0 21 35.486113263335575 37.0 34.0 40.0 29.0 41.0 22 35.434845725628264 37.0 33.0 40.0 28.0 41.0 23 35.344699371217786 37.0 34.0 40.0 28.0 41.0 24 35.25924915935124 37.0 34.0 40.0 27.0 41.0 25 35.04999144280048 36.0 33.0 40.0 27.0 41.0 26 34.864786537320114 36.0 33.0 40.0 27.0 41.0 27 34.62343992947088 36.0 33.0 40.0 25.0 41.0 28 34.65552032425919 36.0 33.0 40.0 25.0 41.0 29 34.52257745277053 36.0 33.0 40.0 25.0 41.0 30 34.55724078664737 36.0 33.0 40.0 25.0 41.0 31 34.51351895915323 36.0 33.0 40.0 25.0 41.0 32 34.28712701837633 36.0 33.0 40.0 24.0 41.0 33 34.164113330498466 36.0 33.0 40.0 24.0 41.0 34 34.06637230979247 36.0 33.0 40.0 24.0 41.0 35 33.871877886537604 36.0 32.0 40.0 23.0 41.0 36 33.780441276370034 36.0 32.0 40.0 23.0 41.0 37 33.76620557589548 36.0 32.0 40.0 23.0 41.0 38 33.791760246285506 36.0 32.0 40.0 23.0 41.0 39 33.70013347612865 36.0 32.0 40.0 23.0 41.0 40 33.58740703907545 35.0 32.0 40.0 23.0 41.0 41 33.611228421392916 35.0 32.0 40.0 23.0 41.0 42 33.46645193423054 35.0 32.0 39.0 23.0 41.0 43 33.50777774585967 35.0 32.0 39.0 23.0 41.0 44 33.1991185477603 35.0 31.0 39.0 22.0 41.0 45 33.09210540689585 35.0 31.0 39.0 22.0 41.0 46 33.04488868155606 35.0 31.0 39.0 22.0 41.0 47 32.952196610863474 35.0 31.0 39.0 22.0 41.0 48 32.96014691679853 35.0 31.0 39.0 22.0 40.0 49 32.96285042541217 35.0 31.0 39.0 22.0 40.0 50 32.38290898659696 35.0 30.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 10.0 13 10.0 14 44.0 15 143.0 16 462.0 17 1063.0 18 2257.0 19 4319.0 20 7087.0 21 10972.0 22 16047.0 23 22310.0 24 30242.0 25 39773.0 26 51036.0 27 62423.0 28 72836.0 29 84813.0 30 100826.0 31 119924.0 32 142733.0 33 173596.0 34 238516.0 35 264460.0 36 219472.0 37 251887.0 38 288397.0 39 265942.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.17183099389344 23.886239011685937 28.079833209459608 13.862096784961015 2 30.511453497993003 26.548559780838588 28.98483292017367 13.955153800994738 3 28.856171480613995 26.226420667073153 30.50497996644283 14.412427885870022 4 25.799450801767108 29.180900006999504 29.636029734548792 15.383619456684588 5 22.645829447528588 33.32703512659598 29.231231714802092 14.795903711073342 6 21.31365757364755 42.5118435282689 25.87644536764197 10.29805353044158 7 89.37462853055284 3.73348794284519 5.611216688116983 1.2806668384849833 8 87.5445611613192 5.59681308041785 5.210505085161331 1.6481206731016267 9 85.06778799022335 4.80376500594958 7.261036663250531 2.8674103405765408 10 44.460012388721005 29.59921152385719 13.545986147451675 12.394789939970133 11 38.688009360726625 24.49661211772279 21.481322040797004 15.334056480753583 12 34.57290673299879 22.04079700502063 25.843349437591716 17.54294682438887 13 24.31167141324881 31.604104704517678 26.554669176239067 17.52955470599445 14 19.764622392835744 34.17850682330455 28.597837112189943 17.45903367166976 15 18.977481415907004 23.246856392389876 39.47098300171994 18.30467918998318 16 21.481038823791685 20.754627664717997 37.73057404445617 20.033759467034148 17 21.41755775502781 20.446528022501994 28.537714187917718 29.598200034552473 18 23.401695175155556 23.131061096786173 31.614543274142328 21.85270045391594 19 29.283950537363808 24.069318575839244 25.557300262218487 21.089430624578462 20 30.438990404203263 24.265830717959155 24.59201578894345 20.70316308889413 21 25.532417625322513 26.706271193229657 27.358560416053873 20.402750765393957 22 25.827974800160057 23.331416898264003 26.178314235740935 24.662294065835006 23 22.79338550730032 28.672849159027564 25.257535291873328 23.276230041798783 24 22.69373358099986 24.14465429925437 33.302516625849705 19.859095493896067 25 22.465784351289425 24.84881269362434 30.87368804779732 21.811714907288913 26 20.990790187582714 29.867498947039632 26.17398506151676 22.967725803860894 27 21.16962149665622 28.778731859445067 27.93417874958074 22.11746789431798 28 19.91412051207253 27.345491974236964 32.57525581576006 20.165131697930452 29 20.73561166578937 25.31717270127929 31.73300890151048 22.214206731420862 30 22.42309950263048 26.932399742191603 29.588813413804726 21.05568734137319 31 28.358235525689196 25.18899677658588 25.22180948963082 21.2309582080941 32 28.83282630746119 25.588373213659317 25.49046104896296 20.088339429916534 33 27.911278631722002 25.2987231363613 25.27910024384984 21.510897988066855 34 22.27420827697652 26.62239850008274 27.888944947873913 23.21444827506683 35 22.666827965494456 25.960965413943903 28.973746997394002 22.398459623167636 36 28.59512632085331 26.13639811895357 24.500091640931007 20.768383919262114 37 22.962546978620757 29.85398544992865 26.580522842867566 20.60294472858303 38 24.02598637402528 30.52185160804547 23.874343897462495 21.57781812046676 39 22.746735620566895 29.376198361953758 25.144410328034073 22.732655689445274 40 24.90586069041023 24.975612992863336 26.442434322987957 23.676091993738478 41 20.879243147058812 24.40630635259789 26.794756277606073 27.919694222737228 42 23.079394223101364 26.159500534673246 25.07579089360225 25.68531434862314 43 22.843595836386346 25.46582116950012 26.740499991301192 24.950083002812345 44 22.472905235994617 27.027601115551324 28.142788303785032 22.356705344669024 45 20.934025407802142 30.435632259711614 25.440412558165693 23.189929774320554 46 23.185115085230112 28.653145347371726 26.3448862944413 21.816853272956862 47 22.966269259262106 26.738193795686442 26.99567851309454 23.299858431956913 48 23.4079259492726 25.47031218201305 28.636637841918787 22.485124026795567 49 23.044396693158244 24.549047723279184 29.244947509774022 23.16160807378855 50 21.550426990095094 29.4900920576646 26.232044547607362 22.727436404632943 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1763.0 1 2562.5 2 3362.0 3 10889.0 4 18416.0 5 13540.5 6 8665.0 7 9013.5 8 9362.0 9 9630.5 10 9899.0 11 10116.5 12 10334.0 13 10261.0 14 10188.0 15 9914.5 16 9641.0 17 9782.5 18 9924.0 19 9947.0 20 9970.0 21 11005.0 22 12040.0 23 12112.5 24 12185.0 25 13686.0 26 15187.0 27 18756.5 28 22326.0 29 25852.5 30 29379.0 31 34397.0 32 39415.0 33 47994.0 34 56573.0 35 60996.0 36 65419.0 37 69460.5 38 73502.0 39 90212.0 40 106922.0 41 132166.5 42 157411.0 43 171390.0 44 185369.0 45 189683.5 46 193998.0 47 192154.0 48 190310.0 49 186701.0 50 183092.0 51 171305.0 52 159518.0 53 151681.5 54 143845.0 55 138821.5 56 133798.0 57 129087.0 58 124376.0 59 118339.0 60 112302.0 61 104628.5 62 96955.0 63 88121.0 64 79287.0 65 67474.0 66 55661.0 67 48027.0 68 40393.0 69 35049.0 70 29705.0 71 25127.0 72 20549.0 73 17271.5 74 13994.0 75 10643.5 76 7293.0 77 5760.5 78 4228.0 79 3354.5 80 2481.0 81 1879.0 82 1277.0 83 996.0 84 715.0 85 545.0 86 375.0 87 259.5 88 144.0 89 94.5 90 45.0 91 25.5 92 6.0 93 4.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2471603.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.255451080579753 #Duplication Level Percentage of deduplicated Percentage of total 1 82.32294589526671 17.498113492860554 2 5.993114815124061 2.547727175463345 3 1.9294548821335502 1.2303430157812636 4 1.044625142736502 0.8881591447591746 5 0.6578584323702312 0.6991538863596167 6 0.47450273194966053 0.6051461763934474 7 0.3963477245830761 0.589718476954227 8 0.3176909881059168 0.5402132205141087 9 0.26427549685029894 0.5055565405587694 >10 3.824701109471916 20.555513514520797 >50 1.9617120582473158 30.04303020425933 >100 0.8088883721408557 23.156924503588083 >500 0.002911763264938337 0.4027030762457265 >1k 7.764702039835564E-4 0.31382782765624956 >5k 0.0 0.0 >10k+ 1.941175509958891E-4 0.42386974408528155 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10273 0.415641185093237 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4217 0.1706180159192233 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01836864577361332 0.0 2 0.0 0.0 0.0 0.07501204683761915 0.0 3 0.0 0.0 0.0 0.11680678490841774 0.0 4 0.0 0.0 0.0 0.204199460835741 0.0 5 0.0 0.0 0.0 0.3425711977206695 0.0 6 0.0 0.0 0.0 0.5881203413331348 0.0 7 0.0 0.0 0.0 0.7069096452787927 0.0 8 0.0 0.0 0.0 1.0366956181878724 0.0 9 0.0 0.0 0.0 1.183240188654893 0.0 10 0.0 0.0 0.0 1.4006294700241098 0.0 11 0.0 0.0 0.0 1.556762959099823 0.0 12 4.0459572188575594E-5 0.0 0.0 1.698047785182329 0.0 13 4.0459572188575594E-5 0.0 0.0 1.7651702154431759 0.0 14 4.0459572188575594E-5 0.0 0.0 1.795676732873362 0.0 15 4.0459572188575594E-5 0.0 0.0 1.8301078288058397 0.0 16 4.0459572188575594E-5 0.0 0.0 1.9018426502961843 0.0 17 4.0459572188575594E-5 0.0 0.0 1.9794036501816836 0.0 18 4.0459572188575594E-5 0.0 0.0 2.1042214303834395 0.0 19 4.0459572188575594E-5 0.0 0.0 2.151842346849393 0.0 20 4.0459572188575594E-5 0.0 0.0 2.207757475614004 0.0 21 4.0459572188575594E-5 0.0 0.0 2.277671616355863 0.0 22 4.0459572188575594E-5 0.0 0.0 2.349527816562773 0.0 23 4.0459572188575594E-5 0.0 0.0 2.439226688104845 0.0 24 4.0459572188575594E-5 0.0 0.0 2.5095454245685898 0.0 25 4.0459572188575594E-5 0.0 0.0 2.5666743404988583 0.0 26 4.0459572188575594E-5 0.0 0.0 2.6222657926859614 0.0 27 4.0459572188575594E-5 0.0 0.0 2.682914691396636 0.0 28 4.0459572188575594E-5 0.0 0.0 2.744858296417345 0.0 29 4.0459572188575594E-5 0.0 0.0 2.812668539405398 0.0 30 4.0459572188575594E-5 0.0 0.0 2.903702576829693 0.0 31 4.0459572188575594E-5 0.0 0.0 2.979887951260781 0.0 32 4.0459572188575594E-5 0.0 0.0 3.059107793606012 0.0 33 4.0459572188575594E-5 0.0 0.0 3.136223738197437 0.0 34 4.0459572188575594E-5 0.0 0.0 3.218397129312434 0.0 35 4.0459572188575594E-5 0.0 0.0 3.3138008005330954 0.0 36 4.0459572188575594E-5 0.0 0.0 3.395812353359338 0.0 37 4.0459572188575594E-5 0.0 0.0 3.486563173778313 0.0 38 4.0459572188575594E-5 0.0 0.0 3.5815622492770887 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTATC 25 4.4443328E-5 44.0 15 CGTTTTT 7645 0.0 40.776978 1 ACGGGAT 675 0.0 40.74074 5 TACGGGA 945 0.0 39.57672 4 TATACGG 290 0.0 38.689655 2 CGTTAGG 350 0.0 38.342857 2 CGGTCTA 465 0.0 37.84946 31 ACGTACA 35 7.2936073E-6 37.714287 32 TCACGAC 445 0.0 37.573032 25 TTATACG 100 0.0 37.399998 1 CACGACG 455 0.0 37.230766 26 TAACGCC 65 1.0913936E-11 37.230766 12 TAGGGTA 1335 0.0 37.078655 5 TATAGCG 215 0.0 36.837208 1 ATTAGCG 240 0.0 36.666668 1 TAAGGGA 2630 0.0 36.13688 4 TATGGGC 865 0.0 36.11561 4 CGACGGT 470 0.0 36.042557 28 AGGGCGA 2975 0.0 35.939495 6 GGGCGAT 5480 0.0 35.850365 7 >>END_MODULE