##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547213_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4135709 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.730110121384264 31.0 31.0 31.0 28.0 34.0 2 31.07067518531889 31.0 31.0 33.0 28.0 34.0 3 31.200095316183997 31.0 31.0 34.0 28.0 34.0 4 35.03325475752767 35.0 35.0 37.0 32.0 37.0 5 34.86427961928656 35.0 35.0 37.0 32.0 37.0 6 34.89668204411868 35.0 35.0 37.0 32.0 37.0 7 35.515728742036735 36.0 35.0 37.0 35.0 37.0 8 34.49396608900675 37.0 35.0 37.0 33.0 37.0 9 36.628866537756885 39.0 37.0 39.0 32.0 39.0 10 36.10550234554704 38.0 35.0 39.0 31.0 39.0 11 35.853825063610614 37.0 35.0 39.0 30.0 39.0 12 35.62500238774053 37.0 35.0 39.0 30.0 39.0 13 35.51744162850916 37.0 35.0 39.0 30.0 39.0 14 36.46259154113599 38.0 35.0 40.0 30.0 41.0 15 36.623873681634755 38.0 35.0 40.0 31.0 41.0 16 36.66988151245651 38.0 35.0 40.0 31.0 41.0 17 36.576102912463135 38.0 35.0 40.0 31.0 41.0 18 36.48071080436269 38.0 35.0 40.0 30.0 41.0 19 36.41123081918965 38.0 35.0 40.0 30.0 41.0 20 36.24136732057309 38.0 34.0 40.0 30.0 41.0 21 36.08990477811664 38.0 34.0 40.0 30.0 41.0 22 36.04727726249598 38.0 34.0 40.0 30.0 41.0 23 35.923714168477524 38.0 34.0 40.0 30.0 41.0 24 35.79274291300476 38.0 34.0 40.0 29.0 41.0 25 35.628359006883706 37.0 34.0 40.0 29.0 41.0 26 35.4516251022497 37.0 34.0 40.0 28.0 41.0 27 35.265828180851216 37.0 34.0 40.0 27.0 41.0 28 35.26713629996695 37.0 34.0 40.0 27.0 41.0 29 35.11520225431722 37.0 33.0 40.0 27.0 41.0 30 35.11953597315478 37.0 33.0 40.0 27.0 41.0 31 35.03683044430834 37.0 33.0 40.0 27.0 41.0 32 34.75792373206142 37.0 33.0 40.0 25.0 41.0 33 34.51957113036725 37.0 33.0 40.0 24.0 41.0 34 34.3267717820572 37.0 33.0 40.0 23.0 41.0 35 34.074149075769114 37.0 33.0 40.0 23.0 41.0 36 33.99617211946005 37.0 33.0 40.0 22.0 41.0 37 33.96817571062181 37.0 33.0 40.0 22.0 41.0 38 33.96438168159317 37.0 33.0 40.0 22.0 41.0 39 33.864475958052175 37.0 33.0 40.0 22.0 41.0 40 33.788339798569 37.0 33.0 40.0 21.0 41.0 41 33.79107258271798 37.0 33.0 40.0 21.0 41.0 42 33.645042966030736 36.0 32.0 40.0 21.0 41.0 43 33.67859344068937 36.0 32.0 40.0 21.0 41.0 44 33.390219911507316 36.0 32.0 40.0 20.0 41.0 45 33.3225120529515 36.0 32.0 40.0 20.0 41.0 46 33.25994454638854 36.0 32.0 40.0 20.0 41.0 47 33.205508898232445 36.0 31.0 40.0 20.0 41.0 48 33.18533073772841 36.0 31.0 40.0 20.0 41.0 49 33.18243522452861 36.0 31.0 39.0 20.0 41.0 50 32.63415873795763 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 6.0 12 6.0 13 11.0 14 34.0 15 170.0 16 494.0 17 1311.0 18 2968.0 19 5735.0 20 10015.0 21 15660.0 22 23254.0 23 33225.0 24 46352.0 25 65440.0 26 87088.0 27 102307.0 28 111628.0 29 124073.0 30 145735.0 31 174329.0 32 212223.0 33 262166.0 34 351841.0 35 405703.0 36 394393.0 37 462696.0 38 550687.0 39 546155.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.805721582442093 23.848147923366948 27.889220445635804 17.45691004855516 2 33.54723458541208 25.084671092671172 27.945994266037577 13.422100055879174 3 27.85004941111669 25.315828555635804 33.52583559433219 13.30828643891531 4 24.483879305821567 28.190909950385773 32.74164115511996 14.583569588672704 5 21.93892268532433 32.28820016108484 31.85656921219554 13.916307941395297 6 20.05709299179415 40.86491578590273 29.089715935042822 9.988275287260299 7 86.56017625998348 3.088249197416936 8.995603897663013 1.3559706449365756 8 84.89366635805372 5.268044729452677 8.429147215144974 1.4091416973486286 9 81.84572463874997 5.272203629413965 10.332593516613475 2.5494782152225897 10 37.626124081747534 35.20216243454266 16.105388459391122 11.066325024318683 11 28.449414598560974 25.39100309040119 30.190470364331727 15.969111946706116 12 26.858635363368165 23.005583806791048 32.22177865995891 17.914002169881876 13 22.54138286808864 27.77765553620915 32.61288451387658 17.06807708182563 14 19.63223234516742 29.908463095445057 32.543126220921245 17.91617833846627 15 18.821778805036814 24.58441829442062 38.499323816061526 18.09447908448104 16 21.546801286067275 23.11654422494426 36.719774045997916 18.61688044299055 17 21.317844171337974 23.201342260782855 32.15151259433389 23.329300973545287 18 22.58916185834158 23.627605327163977 34.04216786045634 19.74106495403811 19 25.898437244980244 24.635751693361403 30.252249372477607 19.213561689180743 20 26.717933974561557 25.463203528101232 29.172893934268586 18.645968563068628 21 24.45556493457349 25.846499354766017 31.317459714888063 18.38047599577243 22 24.22450419021261 23.535093982676248 30.34442220185221 21.895979625258935 23 21.387892620104555 27.33850471587822 30.280974797791625 20.992627866225597 24 20.54912470872588 25.645324658964157 34.781920101245035 19.023630531064928 25 21.54140922390816 26.215746804235984 32.66204174423297 19.580802227622883 26 20.4972835371154 28.427000062141705 30.22420097738985 20.851515423353046 27 20.325414578250065 27.69341363234212 31.5904721536259 20.390699635781917 28 19.653848953105744 26.614034014482158 34.41584018604791 19.316276846364193 29 20.484250705259967 25.21785261003615 33.884178021229246 20.41371866347463 30 20.988323888358686 25.96848569374683 32.950650057825634 20.092540360068853 31 23.969118717008378 25.680312613871042 30.39263642582203 19.957932243298547 32 25.1623119518322 25.663967169837143 29.92091561567799 19.252805262652668 33 24.319288421888487 25.843162562936612 29.650055165873614 20.187493849301294 34 21.58070115668196 27.163347324485354 30.47726520410406 20.778686314728624 35 21.6837306493276 26.796469480807282 30.85882009590133 20.660979773963785 36 24.9900802982028 26.964929108890402 28.40816411406122 19.636826478845588 37 21.949368294529425 29.323799135770916 28.625297379481967 20.101535190217685 38 22.19031851612384 29.408016859987008 27.7639698537784 20.63769477011076 39 21.834152257811176 28.8063304260527 27.976194650058794 21.38332266607733 40 23.071739331756657 26.528172074002303 28.734009090097974 21.666079504143063 41 20.56921799865513 26.65364028271815 28.81496256143747 23.96217915718925 42 22.126097363233242 27.360435659278735 27.931341397569316 22.582125579918703 43 21.593395473424266 26.693198191652268 29.069743543368258 22.643662791555208 44 21.663105407077722 27.43285371383722 29.936801646344076 20.96723923274099 45 20.68634422779746 28.93453093532451 28.720516844874723 21.658607992003308 46 22.12435642836573 28.160854644270184 29.02119080428531 20.693598123078775 47 21.71354415893381 27.290072875049958 29.202852521780425 21.793530444235802 48 21.82264274396482 26.70876988685616 30.27282625542561 21.19576111375341 49 21.71349579963194 26.57210649975615 30.292266694779542 21.422131005832373 50 20.621155888869357 28.41887569942663 29.65839714544713 21.301571266256886 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2563.0 1 3841.5 2 5120.0 3 35921.0 4 66722.0 5 47889.5 6 29057.0 7 29057.5 8 29058.0 9 29601.5 10 30145.0 11 30408.0 12 30671.0 13 29604.5 14 28538.0 15 27708.0 16 26878.0 17 26331.5 18 25785.0 19 24520.0 20 23255.0 21 24769.5 22 26284.0 23 29383.0 24 32482.0 25 35620.5 26 38759.0 27 47184.0 28 55609.0 29 66772.0 30 77935.0 31 88369.0 32 98803.0 33 110931.0 34 123059.0 35 137117.0 36 151175.0 37 161432.0 38 171689.0 39 191840.0 40 211991.0 41 239035.5 42 266080.0 43 282284.0 44 298488.0 45 307223.0 46 315958.0 47 307501.0 48 299044.0 49 288173.0 50 277302.0 51 259912.0 52 242522.0 53 225984.5 54 209447.0 55 199835.0 56 190223.0 57 177344.0 58 164465.0 59 155040.0 60 145615.0 61 134133.0 62 122651.0 63 108661.0 64 94671.0 65 82264.0 66 69857.0 67 60273.0 68 50689.0 69 44566.5 70 38444.0 71 32146.0 72 25848.0 73 21064.5 74 16281.0 75 13735.5 76 11190.0 77 8543.0 78 5896.0 79 4309.0 80 2722.0 81 2181.5 82 1641.0 83 1150.5 84 660.0 85 452.0 86 244.0 87 174.5 88 105.0 89 77.0 90 49.0 91 37.5 92 26.0 93 18.5 94 11.0 95 6.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4135709.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.547452840356147 #Duplication Level Percentage of deduplicated Percentage of total 1 81.1739194388931 17.49091200976418 2 5.977245039502582 2.575888112078692 3 2.097390247234395 1.3558025232031814 4 1.103178716888485 0.9508276550655695 5 0.7905544154617229 0.8517216992448398 6 0.5733803915446604 0.7412932167836107 7 0.4560613034060583 0.6878871599217379 8 0.38514675858489583 0.6639145293779262 9 0.32848237533985947 0.6370162642371409 >10 4.546540567062078 24.065978653943056 >50 1.8935791669149868 29.234947642719177 >100 0.6707331291900129 19.07798480066929 >500 0.0028700378615501318 0.3979656736119985 >1k 8.036106012334933E-4 0.2798969167651235 >5k 0.0 0.0 >10k+ 1.1480151446192764E-4 0.9879631426144293 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 39939 0.9657110788017241 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.017941300995790565 0.0 2 0.0 0.0 0.0 0.06910544238001272 0.0 3 0.0 0.0 0.0 0.12094661399049111 0.0 4 0.0 0.0 0.0 0.17878433903352484 0.0 5 0.0 0.0 0.0 0.27368946896408813 0.0 6 0.0 0.0 0.0 0.5248193236032807 0.0 7 0.0 0.0 0.0 0.6586295118926404 0.0 8 0.0 0.0 0.0 1.0228959532694395 0.0 9 0.0 0.0 0.0 1.224578421740988 0.0 10 0.0 0.0 0.0 1.48484818443464 0.0 11 0.0 0.0 0.0 1.648762038141465 0.0 12 0.0 0.0 0.0 1.798458257096909 0.0 13 0.0 0.0 0.0 1.8847554312936428 0.0 14 0.0 0.0 0.0 1.9306000494715658 0.0 15 0.0 0.0 0.0 1.9689247962078569 0.0 16 0.0 0.0 0.0 2.0337504403718927 0.0 17 0.0 0.0 0.0 2.108658998976959 0.0 18 0.0 0.0 0.0 2.219643596781108 0.0 19 0.0 0.0 0.0 2.276078902069754 0.0 20 0.0 0.0 0.0 2.341315600299731 0.0 21 0.0 0.0 0.0 2.4125246723113256 0.0 22 0.0 0.0 0.0 2.491326154717365 0.0 23 0.0 0.0 0.0 2.5816129713188234 0.0 24 0.0 0.0 0.0 2.653789229367927 0.0 25 0.0 0.0 0.0 2.71832471772071 0.0 26 0.0 0.0 0.0 2.7849396560541373 0.0 27 0.0 0.0 0.0 2.8603076280270203 0.0 28 0.0 0.0 0.0 2.9390607511311844 0.0 29 0.0 0.0 0.0 3.0190712160841104 0.0 30 0.0 0.0 0.0 3.1336102225761047 0.0 31 0.0 0.0 0.0 3.222301182215673 0.0 32 0.0 0.0 0.0 3.3115240941758715 0.0 33 0.0 0.0 0.0 3.4003601317210665 0.0 34 0.0 0.0 0.0 3.4934276081803626 0.0 35 0.0 0.0 0.0 3.5952239386281772 0.0 36 0.0 0.0 0.0 3.6931031656240805 2.4179650937723133E-5 37 0.0 0.0 0.0 3.7944884420059535 2.4179650937723133E-5 38 0.0 0.0 0.0 3.906488585149487 2.4179650937723133E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 27435 0.0 42.46838 1 CGTTAGG 630 0.0 38.4127 2 TCACGAC 385 0.0 37.142857 25 TCGATAG 160 0.0 37.125004 1 ACGGGAT 2080 0.0 37.019234 5 AATACCG 60 1.9826984E-10 36.666664 1 TACGGGA 1715 0.0 36.431488 4 GTTTTTT 32300 0.0 36.194427 2 TAACGCC 195 0.0 36.102566 12 CGGTCTA 390 0.0 36.102566 31 TAAGGGA 5965 0.0 35.738476 4 GGGCGAT 8560 0.0 35.672897 7 AACGGGA 1700 0.0 35.458824 4 CGCGATA 25 0.0023534494 35.2 20 GTCGTAC 25 0.0023534494 35.2 23 CCGGTAT 50 5.9519152E-8 35.2 42 ACGACGT 25 0.0023534494 35.2 14 TAGGGAT 6535 0.0 34.977814 5 AAGGGAT 7340 0.0 34.94823 5 AGGGCGA 4505 0.0 34.91676 6 >>END_MODULE