##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547212_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 6477427 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.59821639055137 31.0 30.0 31.0 27.0 34.0 2 30.936393416706974 31.0 31.0 33.0 28.0 34.0 3 31.053855180459774 31.0 31.0 34.0 28.0 34.0 4 34.8878418853659 35.0 35.0 37.0 32.0 37.0 5 34.70430110597927 35.0 35.0 37.0 32.0 37.0 6 34.74271790326622 35.0 35.0 37.0 32.0 37.0 7 35.450536455293125 35.0 35.0 37.0 35.0 37.0 8 34.43026606089116 36.0 35.0 37.0 33.0 37.0 9 36.545265581534146 39.0 37.0 39.0 32.0 39.0 10 35.92135164163178 38.0 35.0 39.0 30.0 39.0 11 35.67525685739106 37.0 35.0 39.0 30.0 39.0 12 35.48958374984388 37.0 35.0 39.0 30.0 39.0 13 35.39289659304536 37.0 35.0 39.0 30.0 39.0 14 36.32335092313661 38.0 35.0 40.0 30.0 41.0 15 36.478086900863566 38.0 35.0 40.0 30.0 41.0 16 36.519832334660045 38.0 35.0 40.0 30.0 41.0 17 36.43597017766468 38.0 35.0 40.0 30.0 41.0 18 36.29714005267832 38.0 35.0 40.0 30.0 41.0 19 36.21415494146055 38.0 34.0 40.0 30.0 41.0 20 36.02385746686146 38.0 34.0 40.0 30.0 41.0 21 35.868600448912815 38.0 34.0 40.0 29.0 41.0 22 35.83614311670359 38.0 34.0 40.0 29.0 41.0 23 35.70196175117064 37.0 34.0 40.0 29.0 41.0 24 35.601284584141204 37.0 34.0 40.0 29.0 41.0 25 35.416621291139215 37.0 34.0 40.0 27.0 41.0 26 35.258770496371476 37.0 34.0 40.0 27.0 41.0 27 35.04141227681917 37.0 33.0 40.0 27.0 41.0 28 35.05631047636662 37.0 33.0 40.0 27.0 41.0 29 34.90494420083777 37.0 33.0 40.0 26.0 41.0 30 34.867996351020246 37.0 33.0 40.0 26.0 41.0 31 34.753420918522124 37.0 33.0 40.0 25.0 41.0 32 34.39093748181184 37.0 33.0 40.0 24.0 41.0 33 34.09620486653111 37.0 33.0 40.0 23.0 41.0 34 33.881850463154585 37.0 33.0 40.0 21.0 41.0 35 33.60877089004631 37.0 32.0 40.0 20.0 41.0 36 33.527210418581326 37.0 32.0 40.0 18.0 41.0 37 33.5048039908439 37.0 32.0 40.0 18.0 41.0 38 33.512170804858165 37.0 32.0 40.0 18.0 41.0 39 33.410669082029024 37.0 32.0 40.0 18.0 41.0 40 33.37082393981437 37.0 32.0 40.0 18.0 41.0 41 33.39111502144293 37.0 32.0 40.0 18.0 41.0 42 33.24131171219683 37.0 31.0 40.0 18.0 41.0 43 33.286285897162564 37.0 32.0 40.0 18.0 41.0 44 32.99505513531839 36.0 31.0 40.0 17.0 41.0 45 32.939669408856325 36.0 31.0 40.0 17.0 41.0 46 32.8838274827335 36.0 31.0 40.0 17.0 41.0 47 32.84129670623845 36.0 31.0 40.0 17.0 41.0 48 32.834320170648006 36.0 31.0 40.0 17.0 41.0 49 32.832372174939216 36.0 31.0 40.0 17.0 41.0 50 32.28396769272737 35.0 30.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 7.0 12 12.0 13 28.0 14 101.0 15 379.0 16 1114.0 17 2944.0 18 6785.0 19 12747.0 20 21057.0 21 31611.0 22 45401.0 23 63169.0 24 87310.0 25 121744.0 26 160205.0 27 182710.0 28 192603.0 29 207026.0 30 236977.0 31 279138.0 32 333258.0 33 402474.0 34 522667.0 35 599373.0 36 580814.0 37 686507.0 38 836623.0 39 862641.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.984695003123925 23.513117168283024 27.08367072295836 18.41851710563469 2 33.90460440542209 24.802008575318563 28.141667980202634 13.151719039056712 3 26.594927275907548 25.100954437618515 35.09679074731371 13.207327539160223 4 23.345427127160214 28.14135921562682 34.11081282737729 14.402400829835674 5 21.07072762070495 32.02537056766522 33.68184620220344 13.222055609426398 6 19.637519650935474 40.49776246031024 30.396483047975686 9.4682348407786 7 85.57913504853084 2.84957283192848 10.402834335300112 1.1684577842405635 8 83.82854797128552 5.036629513539867 9.857833982536585 1.2769885326380368 9 80.56567831640558 5.332904562259057 11.788477122165947 2.3129399991694233 10 33.69597218154678 37.09665890483984 18.329469401970876 10.877899511642507 11 25.70015841166562 25.082459439527454 33.3505726888161 15.866809459990828 12 25.427534729453534 23.653852061937556 33.70224010243574 17.216373106173176 13 20.977727730470757 28.447221404424937 34.45758632247033 16.11746454263398 14 18.501451270697455 31.27244814955074 33.60005446607117 16.62604611368063 15 17.554254181482865 26.360127254232275 39.8058056076896 16.279812956595265 16 20.05220591447808 24.35085721537271 38.75538852078147 16.841548349367734 17 19.96567464210712 23.73678622700032 34.18610506918874 22.11143406170382 18 21.24613677622303 24.20021097883465 35.84946615376754 18.704186091174783 19 23.268344050809063 25.66736761371452 32.77878700910099 18.285501326375428 20 24.67299129731605 25.863371366439175 32.20527224776134 17.258365088483437 21 22.464490915914606 26.126068267538948 33.55778459564268 17.851656220903763 22 21.90981079369941 24.584036223024977 32.91436553433948 20.591787448936127 23 19.04685301740954 27.630616292549497 33.030955038165615 20.291575651875352 24 19.008303760119567 26.177045299005297 36.98312617031423 17.831524770560904 25 19.006790813698093 27.268682456784155 34.96741839004901 18.757108339468743 26 19.120971953832903 29.568005938160326 32.720476818959135 18.59054528904764 27 18.819880177731065 28.80981908402827 33.73614245285975 18.63415828538091 28 18.37419395077706 27.47200392995552 36.25334565715677 17.90045646211065 29 18.841169495233213 25.294765961854914 36.28777290735967 19.576291635552202 30 19.595620297997954 27.194440014530464 34.28704020902127 18.92289947845032 31 21.98220064849824 27.20816459992525 31.857757717686358 18.951877033890156 32 22.862148813101253 26.65941275756562 32.12536397554152 18.353074453791606 33 22.33124356322348 27.213830429891374 31.042943440350623 19.411982566534522 34 20.063460383266378 27.705815904988203 31.8325625283002 20.398161183445218 35 19.8661906957809 27.400092660249204 31.67941529869808 21.05430134527182 36 22.878991920711726 27.808495564674057 29.93088150588189 19.381631008732324 37 20.554843767440374 29.59499196208618 30.485376369351595 19.36478790112185 38 20.40507750994338 29.879765530356423 29.616404785418656 20.098752174281547 39 20.157540949515912 29.609920729326628 29.986613511815722 20.245924809341734 40 21.36389958543724 27.871607043969775 30.031183678334006 20.733309692258977 41 19.184901659254518 27.6793856572988 30.464611951628324 22.67110073181836 42 20.697801766040744 28.27154979901742 29.20303077132324 21.827617663618597 43 20.796992386019944 27.961349467929164 30.16893899383196 21.07271915221893 44 20.329275806581844 29.20982359199108 30.097737882650012 20.36316271877707 45 19.536630825789313 30.40989886879466 28.968014614444904 21.085455690971123 46 20.6528456438027 30.192482292737534 29.156515387977354 19.99815667548241 47 20.54144338485019 28.37802726298575 30.024159284234308 21.05637006792975 48 21.07534365111332 27.05839834242825 30.930908214017695 20.935349792440732 49 20.2763226818303 27.540472474641554 31.136005083499974 21.04719976002817 50 19.74941593320928 29.599299227918742 29.896330749848666 20.75495408902331 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4016.0 1 5235.0 2 6454.0 3 53709.0 4 100964.0 5 78401.5 6 55839.0 7 56666.0 8 57493.0 9 59228.0 10 60963.0 11 60512.0 12 60061.0 13 59156.0 14 58251.0 15 55986.5 16 53722.0 17 51995.5 18 50269.0 19 49204.5 20 48140.0 21 47992.5 22 47845.0 23 52246.5 24 56648.0 25 64665.0 26 72682.0 27 86029.5 28 99377.0 29 113767.5 30 128158.0 31 149378.0 32 170598.0 33 195951.5 34 221305.0 35 248722.0 36 276139.0 37 293382.0 38 310625.0 39 344435.5 40 378246.0 41 419156.0 42 460066.0 43 488063.5 44 516061.0 45 521603.0 46 527145.0 47 517090.0 48 507035.0 49 487187.0 50 467339.0 51 431041.5 52 394744.0 53 360226.5 54 325709.0 55 291498.5 56 257288.0 57 231508.5 58 205729.0 59 183298.0 60 160867.0 61 139563.0 62 118259.0 63 100094.5 64 81930.0 65 65336.5 66 48743.0 67 40653.0 68 32563.0 69 27222.0 70 21881.0 71 18091.5 72 14302.0 73 11435.0 74 8568.0 75 6581.5 76 4595.0 77 4055.0 78 3515.0 79 2623.0 80 1731.0 81 1287.0 82 843.0 83 598.0 84 353.0 85 281.5 86 210.0 87 149.5 88 89.0 89 67.0 90 45.0 91 31.0 92 17.0 93 10.0 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 6477427.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.939717108554106 #Duplication Level Percentage of deduplicated Percentage of total 1 82.56944166963216 18.11550192042989 2 6.431078823220428 2.8219210016853844 3 2.103696531285698 1.3846352033596425 4 1.1211722953044103 0.9839281195570818 5 0.6914410444488783 0.7585010456225787 6 0.5007456987174205 0.6591731383911282 7 0.4106371643327327 0.63064842538033 8 0.3041600591746901 0.5338548523211022 9 0.26814915454235966 0.5294804934201595 >10 3.301416797249558 17.260885708533795 >50 1.232046026055617 19.719148721666755 >100 1.0617575342361736 34.93313620593735 >500 0.0032470183594340263 0.4753993478909731 >1k 8.658715203698242E-4 0.2636938605981408 >5k 7.215596003081766E-5 0.0799772698410154 >10k+ 7.215596003081766E-5 0.8501146853647125 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53700 0.8290328860518228 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01900445964115072 0.0 2 0.0 0.0 0.0 0.0707688407758204 0.0 3 0.0 0.0 0.0 0.12168411932701055 0.0 4 0.0 0.0 0.0 0.19848930755993083 0.0 5 0.0 0.0 0.0 0.31869135692304984 0.0 6 0.0 0.0 0.0 0.5992657269622645 0.0 7 0.0 0.0 0.0 0.7577391454971241 0.0 8 0.0 0.0 0.0 1.1603372758967412 0.0 9 0.0 0.0 0.0 1.3835586259791117 0.0 10 0.0 0.0 0.0 1.6636698491546102 0.0 11 0.0 0.0 0.0 1.835003312271987 0.0 12 0.0 0.0 0.0 1.9967187588528594 0.0 13 0.0 0.0 0.0 2.0874955441412153 0.0 14 0.0 0.0 0.0 2.1323899134640962 0.0 15 0.0 0.0 0.0 2.1733012197590185 0.0 16 0.0 0.0 0.0 2.2458763333033316 0.0 17 0.0 0.0 0.0 2.329412589288926 0.0 18 1.5438228790536735E-5 0.0 0.0 2.4608845456691366 0.0 19 1.5438228790536735E-5 0.0 0.0 2.5238570809057363 0.0 20 1.5438228790536735E-5 0.0 0.0 2.5937922573268675 0.0 21 1.5438228790536735E-5 0.0 0.0 2.6747040144180705 0.0 22 1.5438228790536735E-5 0.0 0.0 2.7637208416243055 0.0 23 1.5438228790536735E-5 0.0 0.0 2.868639044484793 0.0 24 1.5438228790536735E-5 0.0 0.0 2.9508321745656105 0.0 25 1.5438228790536735E-5 0.0 0.0 3.0277608686288553 0.0 26 1.5438228790536735E-5 0.0 0.0 3.101061578926324 0.0 27 1.5438228790536735E-5 0.0 0.0 3.180167063249034 0.0 28 1.5438228790536735E-5 0.0 0.0 3.261897046466135 0.0 29 1.5438228790536735E-5 0.0 0.0 3.354480104522984 0.0 30 1.5438228790536735E-5 0.0 0.0 3.480224478021906 0.0 31 1.5438228790536735E-5 0.0 0.0 3.585297063170299 0.0 32 1.5438228790536735E-5 0.0 0.0 3.68743638484849 0.0 33 1.5438228790536735E-5 0.0 0.0 3.794176298706261 0.0 34 1.5438228790536735E-5 0.0 0.0 3.901580056402025 0.0 35 1.5438228790536735E-5 0.0 0.0 4.0239897724821905 0.0 36 1.5438228790536735E-5 0.0 0.0 4.138989138742899 0.0 37 3.087645758107347E-5 0.0 0.0 4.260441684638051 0.0 38 3.087645758107347E-5 0.0 0.0 4.382002298134738 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 54585 0.0 42.690117 1 CGACGGT 420 0.0 38.238094 28 CACGACG 455 0.0 37.23077 26 ACGGGAT 2860 0.0 37.153847 5 AGGGCGA 6050 0.0 37.127274 6 GTTTTTT 62030 0.0 37.091084 2 GGGCGAT 11735 0.0 36.81977 7 TAGGGAT 13005 0.0 36.624374 5 TAGGGCG 2660 0.0 36.473686 5 TACGGGA 2300 0.0 36.25217 4 GGGACCG 4895 0.0 36.13483 7 TAGGGAC 7320 0.0 36.03552 5 ACGGGAC 2180 0.0 36.027523 5 AGGGATT 14865 0.0 35.94887 6 GACCGAT 4170 0.0 35.769783 9 AACGGGA 2410 0.0 35.692947 4 CGTTAGG 960 0.0 35.520836 2 GTAGGGA 9980 0.0 35.513027 4 TGGGCGA 3370 0.0 35.38279 6 TTAGGGA 9860 0.0 35.23124 4 >>END_MODULE