##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547209_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2659163 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.59940176664612 31.0 30.0 31.0 28.0 33.0 2 30.920410294517485 31.0 31.0 33.0 28.0 34.0 3 31.09096057669274 31.0 31.0 34.0 28.0 34.0 4 34.91853714871935 35.0 35.0 37.0 32.0 37.0 5 34.70774450456779 35.0 35.0 37.0 32.0 37.0 6 34.75041356998424 35.0 35.0 37.0 32.0 37.0 7 35.44076350340314 35.0 35.0 37.0 35.0 37.0 8 34.423767177867624 36.0 35.0 37.0 33.0 37.0 9 36.52655704069288 39.0 37.0 39.0 32.0 39.0 10 35.921176325031595 38.0 35.0 39.0 30.0 39.0 11 35.57815861607581 37.0 35.0 39.0 30.0 39.0 12 35.3395233763406 37.0 34.0 39.0 30.0 39.0 13 35.21461602767487 37.0 34.0 39.0 30.0 39.0 14 36.148964918660496 38.0 34.0 40.0 29.0 41.0 15 36.34115208432127 38.0 34.0 40.0 30.0 41.0 16 36.40405721650008 38.0 35.0 40.0 30.0 41.0 17 36.2991151727066 38.0 34.0 40.0 30.0 41.0 18 36.21590590723472 38.0 34.0 40.0 30.0 41.0 19 36.22208980795837 38.0 34.0 40.0 30.0 41.0 20 36.09391865034223 38.0 34.0 40.0 30.0 41.0 21 35.925445337499056 38.0 34.0 40.0 29.0 41.0 22 35.88229341337857 38.0 34.0 40.0 29.0 41.0 23 35.75772000437732 38.0 34.0 40.0 29.0 41.0 24 35.68857381063139 38.0 34.0 40.0 29.0 41.0 25 35.49437398158744 37.0 34.0 40.0 28.0 41.0 26 35.32909791539669 37.0 34.0 40.0 27.0 41.0 27 35.11805481649677 37.0 33.0 40.0 27.0 41.0 28 35.16298060705568 37.0 33.0 40.0 27.0 41.0 29 35.026896809259156 37.0 33.0 40.0 27.0 41.0 30 35.03616589129737 37.0 33.0 40.0 27.0 41.0 31 34.99751575965821 37.0 33.0 40.0 26.0 41.0 32 34.77669289171066 37.0 33.0 40.0 25.0 41.0 33 34.627042042928544 37.0 33.0 40.0 25.0 41.0 34 34.545833783036244 37.0 33.0 40.0 24.0 41.0 35 34.36811244741296 37.0 33.0 40.0 24.0 41.0 36 34.331995443679084 37.0 33.0 40.0 24.0 41.0 37 34.35580744768185 37.0 33.0 40.0 24.0 41.0 38 34.37462878356836 37.0 33.0 40.0 24.0 41.0 39 34.27599511575635 37.0 33.0 40.0 23.0 41.0 40 34.20292099431287 37.0 33.0 40.0 23.0 41.0 41 34.227607333585794 37.0 33.0 40.0 23.0 41.0 42 34.074587379562665 37.0 33.0 40.0 23.0 41.0 43 34.14041147534017 37.0 33.0 40.0 23.0 41.0 44 33.747895484406186 36.0 32.0 40.0 23.0 41.0 45 33.71103275729995 36.0 32.0 40.0 23.0 41.0 46 33.68382758033261 36.0 32.0 40.0 23.0 41.0 47 33.64379656305386 36.0 32.0 40.0 23.0 41.0 48 33.67219760503587 36.0 32.0 40.0 23.0 41.0 49 33.688212794777904 36.0 32.0 40.0 23.0 41.0 50 33.11647048338143 35.0 31.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 9.0 13 15.0 14 32.0 15 117.0 16 376.0 17 909.0 18 2027.0 19 3755.0 20 6494.0 21 9896.0 22 14335.0 23 20501.0 24 28156.0 25 38225.0 26 49986.0 27 60846.0 28 70661.0 29 82146.0 30 98029.0 31 118667.0 32 141932.0 33 172520.0 34 230303.0 35 260101.0 36 244737.0 37 288123.0 38 352979.0 39 363283.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.466996946031514 24.98823878039819 26.89086753989883 14.65389673367146 2 31.10268155806921 26.184705488155487 28.917219440854137 13.795393512921173 3 27.602369617808307 26.68963880739917 31.86581642419062 13.842175150601898 4 24.54411406897584 29.379169310042297 31.25126214526902 14.825454475712846 5 22.088115696555647 33.58135623878641 30.362937510788168 13.96759055386977 6 20.812902405757 41.77494948598488 27.327847145887635 10.08430096237049 7 89.96823436547515 2.86473600903743 6.003994489995536 1.1630351354918822 8 88.19542088995672 5.066218204750894 5.555281868768481 1.1830790365238988 9 84.9510165416712 5.5815307297822665 7.240511393998789 2.2269413345477505 10 38.63561579339063 38.24199569563807 12.825163406680975 10.297225104290336 11 28.065522873174753 25.316800812887365 29.989248496613406 16.62842781732447 12 27.69164582990964 23.63627201491597 31.023145252848362 17.64893690232603 13 21.808290804286912 29.809417474596327 31.20387881449915 17.17841290661761 14 18.36920113584613 32.30125419163849 30.91149357899459 18.41805109352078 15 17.805828375319603 26.4756993083914 38.34778086187271 17.370691454416296 16 20.70399595662244 24.426219829322235 36.8162463150999 18.053537898955422 17 20.607950697268276 24.04425753517178 30.59744739228095 24.75034437527899 18 22.006661494613155 25.341808681904794 33.23538271253022 19.41614711095183 19 25.79567330020762 25.972270221870563 28.847648677422182 19.38440780049963 20 26.695430103382158 26.084749223721897 28.351251878880685 18.868568794015257 21 23.7616122065477 27.826312264423052 29.87018847659959 18.541887052429658 22 23.526312602875414 25.159232435168512 29.5183108369062 21.796144125049874 23 20.26893424735528 28.771609713281958 29.817916389480448 21.14153964988231 24 20.361971041263736 26.541095826017436 34.446628506789544 18.650304625929287 25 20.38566270664867 27.27895958239491 32.31998188903802 20.0153958219184 26 20.30018468217255 30.328941851251688 29.053991801179546 20.316881665396217 27 19.641518778653282 29.720968590492575 30.493918575130596 20.14359405572355 28 18.313958189099353 28.483699570127897 34.012883001154876 19.18945923961788 29 19.28539168151783 26.714383435690102 33.58594414859112 20.414280734200947 30 20.53947050256039 28.107114907961638 31.75198361288872 19.601430976589253 31 24.216228941211952 27.682394798664088 28.551126801929783 19.550249458194177 32 25.080072188128373 27.252936356289553 28.726369914142158 18.94062154143992 33 23.87849108911338 27.68694510265072 28.737538842109338 19.69702496612656 34 20.85174921582468 27.698978964433547 30.313485860024375 21.1357859597174 35 20.45805390643597 27.781598946736246 30.78337055682559 20.97697659000219 36 24.18388793767061 28.221624623988827 28.356366270138384 19.238121168202174 37 21.183846195212556 31.277962276099657 28.17999498338387 19.35819654530392 38 20.70166439590202 31.232948111868286 27.910398873630538 20.15498861859916 39 21.030564880753833 30.56345173274448 27.995425628289805 20.41055775821189 40 22.660965123236146 27.86252666722574 28.658228171796914 20.8182800377412 41 20.102678925661944 27.54374214743511 29.130858093317336 23.222720833585605 42 21.209380545682986 28.53631010960968 27.376321045381573 22.877988299325764 43 21.091411094393237 27.826650716785693 28.75833485950278 22.32360332931829 44 20.686321222128917 29.35675624247179 29.219382189057235 20.737540346342062 45 20.109034308916 30.431229676405696 27.988092493765897 21.471643520912405 46 20.669248180724537 29.891210128901463 29.098855542138637 20.340686148235363 47 21.18147702867406 28.37836567371011 28.922446649566048 21.517710648049782 48 21.322235605715033 26.88515145555199 31.120281080926592 20.672331857806384 49 21.03654420582717 27.224355934555344 30.715266420298416 21.023833439319066 50 19.963386975525758 30.300399035335555 29.420723739011112 20.315490250127578 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1444.0 1 2240.5 2 3037.0 3 13942.5 4 24848.0 5 18476.5 6 12105.0 7 12067.5 8 12030.0 9 12458.5 10 12887.0 11 13040.0 12 13193.0 13 12818.5 14 12444.0 15 12568.5 16 12693.0 17 12263.0 18 11833.0 19 12100.5 20 12368.0 21 13973.0 22 15578.0 23 17931.5 24 20285.0 25 25537.5 26 30790.0 27 36271.5 28 41753.0 29 48537.0 30 55321.0 31 62291.0 32 69261.0 33 79935.5 34 90610.0 35 101319.0 36 112028.0 37 123783.5 38 135539.0 39 147522.0 40 159505.0 41 177430.0 42 195355.0 43 205591.0 44 215827.0 45 220311.5 46 224796.0 47 212982.0 48 201168.0 49 196003.5 50 190839.0 51 178006.5 52 165174.0 53 151266.5 54 137359.0 55 125806.5 56 114254.0 57 105831.5 58 97409.0 59 86675.0 60 75941.0 61 68720.5 62 61500.0 63 53281.0 64 45062.0 65 36038.0 66 27014.0 67 22112.0 68 17210.0 69 14757.0 70 12304.0 71 9940.0 72 7576.0 73 5990.5 74 4405.0 75 3690.0 76 2975.0 77 2254.5 78 1534.0 79 1300.0 80 1066.0 81 797.0 82 528.0 83 379.0 84 230.0 85 141.5 86 53.0 87 31.0 88 9.0 89 7.0 90 5.0 91 5.5 92 6.0 93 5.5 94 5.0 95 6.0 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2659163.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.179201573439336 #Duplication Level Percentage of deduplicated Percentage of total 1 81.57767908026993 17.277501091343815 2 5.767067066070161 2.442837517596866 3 1.8481279352719395 1.1742562222388595 4 0.9971660728886043 0.8447672503961059 5 0.659883012518055 0.6987897668504138 6 0.5013045399516348 0.6370337940789567 7 0.42840763257999326 0.6351332124208129 8 0.374652562693177 0.6347873716227531 9 0.3059919275457529 0.583259824200307 >10 4.784692882493536 25.447543337602525 >50 2.1463267777717716 32.52410116701855 >100 0.6074251800830064 16.358359159756404 >500 9.109499018226024E-4 0.1296888338949061 >1k 1.8218998036452047E-4 0.08122433661076386 >5k 0.0 0.0 >10k+ 1.8218998036452047E-4 0.5307171143679079 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13754 0.5172304217530103 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.012597949053894025 0.0 2 0.0 0.0 0.0 0.05490449438413516 0.0 3 0.0 0.0 0.0 0.09299918809038785 0.0 4 0.0 0.0 0.0 0.14369183085053455 0.0 5 0.0 0.0 0.0 0.23082451132179563 0.0 6 0.0 0.0 0.0 0.4123477951520836 0.0 7 0.0 0.0 0.0 0.5048205017894728 0.0 8 0.0 0.0 0.0 0.7853222987834894 0.0 9 0.0 0.0 0.0 0.923937344194395 0.0 10 0.0 0.0 0.0 1.1238498730615611 0.0 11 0.0 0.0 0.0 1.2618256195652542 0.0 12 0.0 0.0 0.0 1.3902118824607592 0.0 13 0.0 0.0 0.0 1.4547810720892251 0.0 14 0.0 0.0 0.0 1.4849409381824281 0.0 15 0.0 0.0 0.0 1.5172443359056966 0.0 16 0.0 0.0 0.0 1.582114372078733 0.0 17 0.0 0.0 0.0 1.6598079922140914 0.0 18 0.0 0.0 0.0 1.7692033169835772 0.0 19 0.0 0.0 0.0 1.8204224411967225 0.0 20 3.7605818071325454E-5 0.0 0.0 1.8796516046590601 0.0 21 3.7605818071325454E-5 0.0 0.0 1.9471916539151606 0.0 22 3.7605818071325454E-5 0.0 0.0 2.027216834770941 0.0 23 3.7605818071325454E-5 0.0 0.0 2.1192006657734033 0.0 24 3.7605818071325454E-5 0.0 0.0 2.1901628444739942 0.0 25 3.7605818071325454E-5 0.0 0.0 2.2540551293771762 0.0 26 3.7605818071325454E-5 0.0 0.0 2.31516458374308 0.0 27 3.7605818071325454E-5 0.0 0.0 2.3844345006304617 0.0 28 3.7605818071325454E-5 0.0 0.0 2.451485674251635 0.0 29 3.7605818071325454E-5 0.0 0.0 2.528201543117139 0.0 30 3.7605818071325454E-5 0.0 0.0 2.625863852648371 0.0 31 3.7605818071325454E-5 0.0 0.0 2.711266665488351 0.0 32 3.7605818071325454E-5 0.0 0.0 2.7963686317837606 0.0 33 3.7605818071325454E-5 0.0 0.0 2.8841782169803056 0.0 34 3.7605818071325454E-5 0.0 0.0 2.9766133177996235 0.0 35 3.7605818071325454E-5 0.0 0.0 3.07950283604277 0.0 36 3.7605818071325454E-5 0.0 0.0 3.1740062568560106 0.0 37 3.7605818071325454E-5 0.0 0.0 3.2697882754836765 0.0 38 3.7605818071325454E-5 0.0 0.0 3.3738435740870343 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTCGA 60 0.0 44.0 14 CGTTTTT 10295 0.0 41.35017 1 CGACGGT 275 0.0 40.0 28 CGAGTTA 90 0.0 39.11111 37 TACGGGA 900 0.0 38.133335 4 ACGTTCG 75 0.0 38.13333 13 GCGCGAC 355 0.0 37.80282 9 CTATCGT 35 7.2938165E-6 37.714287 32 CGGTCTA 310 0.0 37.612904 31 AGGGCGA 2455 0.0 37.45825 6 TACGCTA 65 1.0913936E-11 37.23077 21 TAGGGCG 1000 0.0 36.96 5 TAGGGAT 5400 0.0 36.78889 5 CGGGATA 660 0.0 36.666668 6 GCGATCG 90 0.0 36.666668 9 AGGGATG 5170 0.0 36.468086 6 GGGCGAT 5120 0.0 36.39453 7 AGGGATT 6425 0.0 36.26148 6 CGACGTC 85 0.0 36.235294 18 GACGGTC 305 0.0 36.065575 29 >>END_MODULE