##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547208_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3871555 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.607825279506557 31.0 30.0 31.0 28.0 34.0 2 30.94391426700641 31.0 31.0 33.0 28.0 34.0 3 31.06326243589462 31.0 31.0 34.0 28.0 34.0 4 34.9142440182304 35.0 35.0 37.0 32.0 37.0 5 34.73306436302726 35.0 35.0 37.0 32.0 37.0 6 34.7624019289407 35.0 35.0 37.0 32.0 37.0 7 35.388377538224304 35.0 35.0 37.0 33.0 37.0 8 34.35068028221219 35.0 35.0 37.0 32.0 37.0 9 36.4582169180084 39.0 37.0 39.0 32.0 39.0 10 35.90022303699676 38.0 35.0 39.0 30.0 39.0 11 35.70693274407829 37.0 35.0 39.0 30.0 39.0 12 35.390292014448974 37.0 35.0 39.0 30.0 39.0 13 35.299856001012515 37.0 34.0 39.0 30.0 39.0 14 36.17870881338377 38.0 34.0 40.0 29.0 41.0 15 36.30716004292849 38.0 34.0 40.0 30.0 41.0 16 36.349864589292935 38.0 34.0 40.0 30.0 41.0 17 36.2460628868762 38.0 34.0 40.0 30.0 41.0 18 36.110804831650334 38.0 34.0 40.0 30.0 41.0 19 36.01133343062413 37.0 34.0 40.0 30.0 41.0 20 35.819471246049716 37.0 34.0 40.0 29.0 41.0 21 35.652455925332326 37.0 34.0 40.0 29.0 41.0 22 35.62401644817134 37.0 34.0 40.0 29.0 41.0 23 35.47840957961336 37.0 34.0 40.0 29.0 41.0 24 35.34116756703702 37.0 34.0 40.0 27.0 41.0 25 35.12609997791585 37.0 33.0 40.0 27.0 41.0 26 34.94372519569011 37.0 33.0 40.0 27.0 41.0 27 34.724082958914444 36.0 33.0 40.0 26.0 41.0 28 34.7030459337398 36.0 33.0 40.0 25.0 41.0 29 34.459396030793826 36.0 33.0 40.0 25.0 41.0 30 34.43366993365715 36.0 33.0 40.0 25.0 41.0 31 34.33156987308717 36.0 33.0 40.0 24.0 41.0 32 34.00726710585282 36.0 33.0 40.0 23.0 41.0 33 33.72618185716075 36.0 32.0 40.0 22.0 41.0 34 33.45343744309457 36.0 32.0 40.0 21.0 41.0 35 33.15747961736305 36.0 31.0 40.0 19.0 41.0 36 33.08184024248655 36.0 31.0 40.0 18.0 41.0 37 33.09001835179921 36.0 31.0 40.0 18.0 41.0 38 33.063205094593776 36.0 31.0 40.0 18.0 41.0 39 32.92752266208281 36.0 31.0 40.0 18.0 41.0 40 32.81889189227584 35.0 31.0 40.0 18.0 41.0 41 32.80170344990579 35.0 31.0 40.0 18.0 41.0 42 32.63052003652279 35.0 31.0 39.0 18.0 41.0 43 32.64944938145009 35.0 31.0 39.0 18.0 41.0 44 32.336945490894486 35.0 30.0 39.0 16.0 41.0 45 32.25127913719423 35.0 30.0 39.0 17.0 41.0 46 32.18798338135452 35.0 30.0 39.0 17.0 41.0 47 32.105715145464806 35.0 30.0 39.0 17.0 40.0 48 32.073452914914036 35.0 30.0 39.0 17.0 40.0 49 32.073549000337074 35.0 30.0 39.0 17.0 40.0 50 31.53348460760599 35.0 29.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 4.0 12 12.0 13 20.0 14 89.0 15 264.0 16 702.0 17 1926.0 18 4090.0 19 8106.0 20 13401.0 21 20359.0 22 29484.0 23 40829.0 24 56042.0 25 76191.0 26 100482.0 27 118792.0 28 127457.0 29 138013.0 30 155125.0 31 179430.0 32 212690.0 33 255210.0 34 330684.0 35 365904.0 36 361496.0 37 407562.0 38 458754.0 39 408435.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.95979393292876 23.05833185890424 25.87717338382123 19.104700824345773 2 35.85600617839602 24.2537946639012 26.73809360838216 13.152105549320622 3 28.116583646622612 24.61233277068258 33.804530737649344 13.466552845045465 4 25.165082247314064 27.150021115546597 33.05126751395757 14.633629123181771 5 22.186924891936187 30.721221834637504 32.76290792717655 14.328945346249764 6 20.438970904455704 39.54028807546322 29.958840827522792 10.061900192558287 7 84.1275921432086 3.344986704308734 11.043237148897536 1.4841840035851228 8 81.8677249838889 5.645819315494679 10.639084295586656 1.8473714050297618 9 78.90754490120895 4.993084174188407 12.877590528870183 3.221780395732464 10 38.140152987623836 28.407991104349545 19.431313774439467 14.02054213358715 11 31.9726569814971 24.511933835371057 27.030637560360116 16.484771622771728 12 28.719519676202452 20.92443475554396 31.490654271991485 18.865391296262096 13 24.281302990658794 23.90778382329581 32.80826437955808 19.002648806487315 14 21.174386002523534 25.968377047465424 33.55411456120345 19.303122388807598 15 20.245172805242337 22.335805638819544 37.62622512143054 19.792796434507583 16 23.79749222211747 20.978082450074968 35.338358876472114 19.886066451335445 17 23.240455062629874 21.187068245188303 32.130113094092685 23.442363598089138 18 24.649165516181483 21.626607396769515 33.113593891859985 20.610633195189013 19 27.083303737128876 23.50680798800482 29.23109706564933 20.178791209216968 20 28.252937127329975 23.532430767482314 28.491704237702937 19.72292786748477 21 26.647974780159394 23.93170186139678 30.271531723041516 19.14879163540231 22 25.18404103777423 21.75500541771975 30.251823879552276 22.809129664953744 23 23.903986899320813 24.402701240199352 30.150081814671363 21.543230045808468 24 23.68983522124831 23.175571572662665 32.73725931828426 20.397333887804773 25 24.479853702194596 23.210182988489123 30.89652607285703 21.413437236459252 26 22.177858767342837 24.69663998057628 29.96640884605798 23.159092406022904 27 22.399578463950533 23.939708979983497 31.412081192182466 22.248631363883504 28 21.881027132508773 24.861302499899914 32.09798130208663 21.15968906550469 29 23.113426000663818 24.21448229458189 31.69796115514309 20.974130549611203 30 23.811698400255192 23.67785037278303 32.05017105529949 20.46028017166229 31 26.00497732823116 23.701975046202367 29.640286654845404 20.65276097072107 32 26.880258707418598 23.648379010500946 28.899602356159214 20.57175992592124 33 26.527893830773426 24.00689128786754 28.19360696154388 21.271607919815164 34 23.78114220255169 25.394783233093683 29.75409105643598 21.069983507918653 35 23.49575299847219 25.23562237912157 29.833542336348057 21.435082286058186 36 26.020784930086233 26.919312782589945 26.573224453740163 20.486677833583663 37 23.79904198700522 27.788343443396773 27.004859804393845 21.407754765204164 38 24.551788622401077 27.572771147510494 26.68248287832667 21.19295735176176 39 23.734081008793627 26.396292962388497 26.503433374961737 23.36619265385614 40 25.206383481572647 24.35819715850608 28.283829107425827 22.151590252495446 41 22.348229587336355 24.87442384261621 28.252058927226916 24.52528764282052 42 23.535297832524655 26.138334596822205 26.85876863430844 23.4675989363447 43 23.027956467104303 25.02348539540314 28.14770809145163 23.80085004604093 44 23.57024503074346 25.116419629838653 28.639680955068442 22.67365438434944 45 22.86605769516383 26.389990585178307 27.341339590939555 23.402612128718307 46 23.57014171308428 26.18061734884304 27.793328520452377 22.45591241762031 47 22.880444679205127 26.440900361740955 28.135568266497568 22.54308669255635 48 22.739312756760526 25.831661954950917 29.304891703721115 22.12413358456744 49 23.708354911656944 25.02568089566079 28.905181509755124 22.360782682927145 50 22.254494641042164 26.15894646982931 28.893816567244947 22.692742321883586 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2238.0 1 4051.0 2 5864.0 3 43027.0 4 80190.0 5 57129.0 6 34068.0 7 34016.5 8 33965.0 9 34423.5 10 34882.0 11 34276.5 12 33671.0 13 32528.0 14 31385.0 15 29730.5 16 28076.0 17 26597.0 18 25118.0 19 24042.5 20 22967.0 21 22391.5 22 21816.0 23 22375.5 24 22935.0 25 23934.5 26 24934.0 27 29204.0 28 33474.0 29 38585.0 30 43696.0 31 49192.0 32 54688.0 33 62542.0 34 70396.0 35 82308.0 36 94220.0 37 103769.5 38 113319.0 39 124749.0 40 136179.0 41 157893.5 42 179608.0 43 197607.0 44 215606.0 45 230969.5 46 246333.0 47 248187.5 48 250042.0 49 252510.0 50 254978.0 51 243920.5 52 232863.0 53 227137.5 54 221412.0 55 217603.5 56 213795.0 57 218821.0 58 223847.0 59 214727.0 60 205607.0 61 196125.0 62 186643.0 63 166566.5 64 146490.0 65 128240.5 66 109991.0 67 93293.0 68 76595.0 69 67407.0 70 58219.0 71 49795.0 72 41371.0 73 33889.0 74 26407.0 75 21115.5 76 15824.0 77 12514.0 78 9204.0 79 6840.0 80 4476.0 81 3389.5 82 2303.0 83 1654.0 84 1005.0 85 743.5 86 482.0 87 360.5 88 239.0 89 158.0 90 77.0 91 60.5 92 44.0 93 26.0 94 8.0 95 6.5 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3871555.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.18065352658762 #Duplication Level Percentage of deduplicated Percentage of total 1 80.30062339141652 20.22022175588257 2 5.571527780931927 2.805894213308089 3 2.0998761694904444 1.5862876281803062 4 1.2257902381903076 1.2346479713657381 5 0.8424190983559185 1.0606331719940363 6 0.6609709522377705 0.9986208323662797 7 0.5410554005861116 0.9536890006593566 8 0.44066255541484617 0.8876936904033569 9 0.3798132683334072 0.8607551683233942 >10 6.50386018486282 40.716635963690514 >50 1.298236107535372 21.615600548249855 >100 0.13046418200830492 4.70665195830605 >500 0.0031337804241586137 0.5548996140686632 >1k 0.001462430864547674 0.5545839714958504 >5k 0.0 0.0 >10k+ 1.04459347467691E-4 1.243184511705956 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 47263 1.220775631496905 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013689589841807749 0.0 2 0.0 0.0 0.0 0.0653484194335351 0.0 3 0.0 0.0 0.0 0.12573759122626438 0.0 4 0.0 0.0 0.0 0.1943405169240783 0.0 5 0.0 2.582941479586368E-5 0.0 0.321911996600849 0.0 6 0.0 2.582941479586368E-5 0.0 0.6389938926348715 0.0 7 0.0 2.582941479586368E-5 0.0 0.8275744500594723 0.0 8 0.0 2.582941479586368E-5 0.0 1.22286781409537 0.0 9 0.0 2.582941479586368E-5 0.0 1.4848555683698152 0.0 10 0.0 2.582941479586368E-5 0.0 1.8124242068109584 0.0 11 0.0 2.582941479586368E-5 0.0 2.0048016882105513 0.0 12 0.0 2.582941479586368E-5 0.0 2.1657447718035776 0.0 13 0.0 2.582941479586368E-5 0.0 2.2642839892497975 0.0 14 0.0 2.582941479586368E-5 0.0 2.3239757668430383 0.0 15 0.0 2.582941479586368E-5 0.0 2.3679374308255987 0.0 16 0.0 2.582941479586368E-5 0.0 2.4292822909657747 0.0 17 0.0 2.582941479586368E-5 0.0 2.492564357215641 0.0 18 0.0 2.582941479586368E-5 0.0 2.5979483695827645 0.0 19 0.0 2.582941479586368E-5 0.0 2.647902457797965 0.0 20 0.0 2.582941479586368E-5 0.0 2.7082916295906942 0.0 21 0.0 2.582941479586368E-5 0.0 2.7702305662711755 0.0 22 0.0 2.582941479586368E-5 0.0 2.8409256745674543 0.0 23 0.0 2.582941479586368E-5 0.0 2.918465577784637 0.0 24 0.0 2.582941479586368E-5 0.0 2.9849246620543943 0.0 25 0.0 2.582941479586368E-5 0.0 3.045417151506307 0.0 26 0.0 2.582941479586368E-5 0.0 3.104334046655672 0.0 27 0.0 2.582941479586368E-5 0.0 3.1726528487907313 0.0 28 2.582941479586368E-5 2.582941479586368E-5 0.0 3.244484451338028 0.0 29 2.582941479586368E-5 2.582941479586368E-5 0.0 3.3198288542975627 0.0 30 2.582941479586368E-5 2.582941479586368E-5 0.0 3.427511684581518 0.0 31 2.582941479586368E-5 2.582941479586368E-5 0.0 3.514530983028783 0.0 32 2.582941479586368E-5 2.582941479586368E-5 0.0 3.6261915431913017 0.0 33 2.582941479586368E-5 2.582941479586368E-5 0.0 3.7264871608436403 0.0 34 2.582941479586368E-5 2.582941479586368E-5 0.0 3.8234249545725167 0.0 35 2.582941479586368E-5 2.582941479586368E-5 0.0 3.927207543222297 0.0 36 2.582941479586368E-5 2.582941479586368E-5 0.0 4.019056942236388 0.0 37 2.582941479586368E-5 2.582941479586368E-5 0.0 4.121522230731579 0.0 38 2.582941479586368E-5 2.582941479586368E-5 0.0 4.2486029515272286 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 30635 0.0 42.70018 1 GTTTTTT 34885 0.0 37.554825 2 TAATGCG 170 0.0 37.52941 1 GGGCGAT 8285 0.0 36.378998 7 GCGCGAC 1830 0.0 35.945354 9 ATTGGGA 2820 0.0 35.496452 4 TATGGGA 2960 0.0 35.452705 4 ACGATAG 180 0.0 35.444447 1 GTTGATC 2255 0.0 35.414635 16 ACGGGTA 330 0.0 35.333332 5 TAGGGAT 3705 0.0 35.271255 5 TAAGGGA 3690 0.0 35.176155 4 AGGGCGA 4395 0.0 35.089874 6 GGCGATA 1900 0.0 35.08421 8 ATAGGGA 4110 0.0 34.793186 4 ATAGGGC 2265 0.0 34.772625 4 TAGGGAC 2970 0.0 34.74074 5 GCCAGTA 2205 0.0 34.72109 25 CGTAAGG 775 0.0 34.63226 2 TACGGGT 305 0.0 34.62295 4 >>END_MODULE