##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547205_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4473079 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.566893855440515 31.0 30.0 31.0 27.0 34.0 2 30.90907627609528 31.0 31.0 33.0 28.0 34.0 3 31.022704942166236 31.0 31.0 34.0 28.0 34.0 4 34.87118559721391 35.0 35.0 37.0 32.0 37.0 5 34.68519558898915 35.0 35.0 37.0 32.0 37.0 6 34.718088368213486 35.0 35.0 37.0 31.0 37.0 7 35.38034338315956 35.0 35.0 37.0 33.0 37.0 8 34.34739784385655 35.0 35.0 37.0 32.0 37.0 9 36.444166758512424 39.0 37.0 39.0 32.0 39.0 10 35.87960261824126 38.0 35.0 39.0 30.0 39.0 11 35.638712618310564 37.0 35.0 39.0 30.0 39.0 12 35.381396796256 37.0 35.0 39.0 30.0 39.0 13 35.3073160567922 37.0 34.0 39.0 30.0 39.0 14 36.194618740245815 38.0 35.0 40.0 30.0 41.0 15 36.320455999100396 38.0 34.0 40.0 30.0 41.0 16 36.358556600498225 38.0 34.0 40.0 30.0 41.0 17 36.24972574819269 38.0 34.0 40.0 30.0 41.0 18 36.10828134267246 38.0 34.0 40.0 30.0 41.0 19 35.9984095966112 37.0 34.0 40.0 29.0 41.0 20 35.781400909753664 37.0 34.0 40.0 29.0 41.0 21 35.62246966798485 37.0 34.0 40.0 29.0 41.0 22 35.58034566346805 37.0 34.0 40.0 29.0 41.0 23 35.44231434320744 37.0 34.0 40.0 28.0 41.0 24 35.311371652501556 37.0 34.0 40.0 27.0 41.0 25 35.10962337128407 37.0 33.0 40.0 27.0 41.0 26 34.912057891219895 36.0 33.0 40.0 27.0 41.0 27 34.72523758243483 36.0 33.0 40.0 26.0 41.0 28 34.69033656682567 36.0 33.0 40.0 25.0 41.0 29 34.4725373730265 36.0 33.0 40.0 25.0 41.0 30 34.398173830598566 36.0 33.0 40.0 24.0 41.0 31 34.283657409135856 36.0 33.0 40.0 24.0 41.0 32 33.914292369976025 36.0 32.0 40.0 23.0 41.0 33 33.6011856709886 36.0 32.0 40.0 21.0 41.0 34 33.30368902494233 36.0 31.0 40.0 19.0 41.0 35 33.004496008230575 36.0 31.0 40.0 18.0 41.0 36 32.88362356220402 36.0 31.0 40.0 18.0 41.0 37 32.87700664352228 36.0 31.0 40.0 17.0 41.0 38 32.84254894670986 36.0 31.0 40.0 17.0 41.0 39 32.70823318792268 36.0 31.0 40.0 16.0 41.0 40 32.61838881003443 36.0 31.0 40.0 15.0 41.0 41 32.60176267845929 36.0 31.0 40.0 15.0 41.0 42 32.434591474910235 35.0 30.0 40.0 15.0 41.0 43 32.46166700834034 35.0 30.0 40.0 15.0 41.0 44 32.06709628870851 35.0 30.0 39.0 14.0 41.0 45 32.026852420893974 35.0 30.0 39.0 14.0 41.0 46 31.985835707350574 35.0 30.0 39.0 14.0 41.0 47 31.926611401229444 35.0 30.0 39.0 14.0 41.0 48 31.918166435245162 35.0 30.0 39.0 14.0 41.0 49 31.91576495742642 35.0 30.0 39.0 15.0 40.0 50 31.40075393258201 35.0 29.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 3.0 12 11.0 13 30.0 14 94.0 15 324.0 16 1018.0 17 2561.0 18 5777.0 19 10760.0 20 17478.0 21 26055.0 22 37276.0 23 51225.0 24 69612.0 25 95636.0 26 125059.0 27 144393.0 28 150623.0 29 159916.0 30 177912.0 31 204085.0 32 239628.0 33 285917.0 34 368989.0 35 408279.0 36 403296.0 37 462113.0 38 530414.0 39 494589.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.480754084602573 22.903105444817765 25.75771632917728 19.858424141402374 2 35.84164285942636 24.109835752956744 26.815444126964895 13.233077260652001 3 27.438840226161894 24.527288697561566 34.8823036659983 13.151567410278245 4 24.35304630211092 27.043519687445716 34.235210243324566 14.368223767118801 5 21.56127803689584 30.696909220695634 33.68525349093991 14.05655925146862 6 19.88681621764337 39.486268854182995 30.874169671494734 9.752745256678901 7 83.34842733606985 3.254536751977776 12.033210233935058 1.363825678017312 8 81.36712988972474 5.458410191279877 11.581955069427568 1.5925048495678256 9 78.22419411774307 5.250030236443398 13.701233535110827 2.8245421107027173 10 36.77554096406524 31.829864842539113 19.486018467368897 11.908575726026747 11 29.037917729599677 23.926293275839754 31.06607327972522 15.969715714835353 12 26.553767550271303 21.43047328249736 34.05175719006975 17.964001977161594 13 23.513199744516026 24.265500341040255 34.36044836230256 17.860851552141156 14 20.398231285430015 26.58014758961333 34.52273031618713 18.49889080876953 15 19.510431181743044 22.718802864872274 38.958109168203826 18.812656785180856 16 22.929172500642174 21.48330042907805 36.824388748779086 18.763138321500694 17 22.03439733570545 21.478382116658345 34.22400990458698 22.263210643049227 18 23.315192957692005 21.869566801748864 35.391214865644 19.42402537491513 19 25.436103408859985 24.25067833588452 31.19233977311825 19.12087848213725 20 26.75188611692304 23.82504310789056 30.916668361994056 18.506402413192344 21 24.865981575554557 24.586599074150044 32.670940978238924 17.87647837205647 22 23.980886543698425 21.879246934829453 32.51733313898547 21.62253338248665 23 21.72027366384542 25.01516293363028 32.443021909516915 20.821541493007388 24 21.43802959885126 23.805772265591553 35.74922329786708 19.0069748376901 25 22.36325358885904 24.137266522679347 33.10303708027513 20.396442808186485 26 20.589598350487435 25.975284585852386 32.186531916829544 21.248585146830628 27 20.822033324249357 24.302767735602256 33.3224161701593 21.552782769989083 28 20.290721447128476 25.092872269861545 34.35336152122509 20.26304476178489 29 21.67138116720049 23.845141120914697 34.03892486584744 20.44455284603737 30 21.99657104200485 24.234090209450805 33.6943747248819 20.07496402366245 31 24.515104696340035 24.587739228392792 31.260525468027726 19.636630607239443 32 24.47461804273969 24.31050289968051 31.068510079969524 20.146368977610276 33 24.523018708142647 24.71011578378115 29.863501181177437 20.903364326898767 34 21.790516107584953 26.085410072122578 30.878596152672465 21.24547766762 35 21.832813594394377 26.67887153345604 30.654790581610563 20.83352429053902 36 24.006171140728792 27.825486650246955 27.47201647902932 20.696325729994932 37 22.16649873610549 28.863652978183485 28.147278418288614 20.822569867422416 38 23.055886113346087 28.624578282654966 27.5939459151068 20.72558968889215 39 22.518515769562754 27.454332910283945 27.82396644458996 22.20318487556334 40 23.811607172598563 25.505183342391224 29.01929521030145 21.663914274708763 41 21.272438962066172 25.728273522555718 29.21895633857573 23.780331176802378 42 22.159389539062467 26.64936165893784 27.75160018412373 23.439648617875964 43 21.7220397851234 25.715910673609834 29.02392289516908 23.538126646097687 44 21.89775767429996 26.24523286979729 29.787669746051883 22.069339709850865 45 21.43134516515358 27.1943553869717 28.42652678389986 22.94777266397486 46 22.252636271346873 27.17783432843462 29.020904839820627 21.548624560397883 47 21.530493872341623 26.845758816242682 29.59131730067812 22.03243001073757 48 21.72586265523144 25.973272548953418 30.64229359687142 21.658571198943726 49 22.34970587373932 25.445671762112852 30.47113632466585 21.733486039481978 50 21.141567139771063 26.844037406895787 30.01384504946146 22.000550403871696 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2708.0 1 4424.0 2 6140.0 3 51655.5 4 97171.0 5 71048.5 6 44926.0 7 44612.0 8 44298.0 9 44964.0 10 45630.0 11 45151.0 12 44672.0 13 43767.5 14 42863.0 15 40815.5 16 38768.0 17 36876.5 18 34985.0 19 33853.5 20 32722.0 21 31967.5 22 31213.0 23 31946.0 24 32679.0 25 35660.5 26 38642.0 27 44266.0 28 49890.0 29 59709.0 30 69528.0 31 78890.5 32 88253.0 33 99112.5 34 109972.0 35 124074.5 36 138177.0 37 147009.0 38 155841.0 39 175433.5 40 195026.0 41 213306.5 42 231587.0 43 250238.5 44 268890.0 45 280069.5 46 291249.0 47 295734.5 48 300220.0 49 293558.0 50 286896.0 51 271697.0 52 256498.0 53 249655.0 54 242812.0 55 230286.0 56 217760.0 57 217337.5 58 216915.0 59 207660.5 60 198406.0 61 183229.5 62 168053.0 63 150460.0 64 132867.0 65 115351.0 66 97835.0 67 82476.5 68 67118.0 69 60013.0 70 52908.0 71 46290.0 72 39672.0 73 32747.5 74 25823.0 75 20780.0 76 15737.0 77 12395.0 78 9053.0 79 6947.0 80 4841.0 81 3428.0 82 2015.0 83 1551.5 84 1088.0 85 772.5 86 457.0 87 304.0 88 151.0 89 117.5 90 84.0 91 52.5 92 21.0 93 15.0 94 9.0 95 9.0 96 9.0 97 5.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4473079.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.26271969837741 #Duplication Level Percentage of deduplicated Percentage of total 1 81.33687055408386 20.547905619510278 2 5.46530935402977 2.761371565515484 3 2.045030397988272 1.549890891571167 4 1.1646957099794721 1.176935250204563 5 0.8376762459265554 1.0580990099415817 6 0.589754699231137 0.8939284594486254 7 0.5130113516223205 0.907204338468429 8 0.4136062799390377 0.8359055612470823 9 0.37958779448750557 0.8630478047756829 >10 5.5764516102353445 35.24959345790405 >50 1.4785314174768185 25.18299015828127 >100 0.19531340319053864 6.768246349612932 >500 0.0027138142251564644 0.43913894400775366 >1k 0.0013569071102283962 0.5050234965652247 >5k 0.0 0.0 >10k+ 9.04604740152264E-5 1.2607190929460044 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55167 1.233311551170905 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011110914875413557 0.0 2 0.0 0.0 0.0 0.045315542157873805 0.0 3 0.0 0.0 0.0 0.0879930803815448 0.0 4 0.0 0.0 0.0 0.1375339000272519 0.0 5 0.0 0.0 0.0 0.22443153809713623 0.0 6 0.0 0.0 0.0 0.45402730423495763 0.0 7 0.0 0.0 0.0 0.6003918106521258 0.0 8 0.0 0.0 0.0 0.9588250062205474 0.0 9 0.0 0.0 0.0 1.1770862978275143 0.0 10 0.0 0.0 0.0 1.4482418039118021 0.0 11 0.0 0.0 0.0 1.6015590156131827 0.0 12 0.0 0.0 0.0 1.7335262802199558 0.0 13 0.0 0.0 0.0 1.8148349269038173 0.0 14 0.0 0.0 0.0 1.8600386892339706 0.0 15 0.0 0.0 0.0 1.8943774523096955 0.0 16 0.0 0.0 0.0 1.952570030620966 0.0 17 0.0 0.0 0.0 2.0117462714161767 0.0 18 0.0 0.0 0.0 2.107921635186859 0.0 19 0.0 0.0 0.0 2.153952568242144 0.0 20 0.0 0.0 0.0 2.205460712855731 0.0 21 0.0 0.0 0.0 2.262468424993165 0.0 22 0.0 0.0 0.0 2.3262947066215465 0.0 23 0.0 0.0 0.0 2.399778765364976 0.0 24 0.0 0.0 0.0 2.4629790799581226 0.0 25 0.0 0.0 0.0 2.5190925534737927 0.0 26 0.0 0.0 0.0 2.5760779096456825 0.0 27 0.0 0.0 0.0 2.6395017838942705 0.0 28 0.0 0.0 0.0 2.703462201315917 0.0 29 0.0 0.0 0.0 2.7727209825715127 0.0 30 0.0 0.0 0.0 2.8711766548276927 0.0 31 2.2355965544091666E-5 0.0 0.0 2.950294416888233 0.0 32 2.2355965544091666E-5 0.0 0.0 3.0384887009596744 0.0 33 2.2355965544091666E-5 0.0 0.0 3.122323571750018 0.0 34 2.2355965544091666E-5 0.0 0.0 3.2126193165826047 0.0 35 2.2355965544091666E-5 0.0 0.0 3.314450739635942 0.0 36 2.2355965544091666E-5 0.0 0.0 3.4125710724089604 0.0 37 2.2355965544091666E-5 0.0 0.0 3.513709460530431 0.0 38 2.2355965544091666E-5 0.0 0.0 3.634878793779408 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 42295 0.0 42.470737 1 GTTTTTT 48040 0.0 37.17194 2 AGGGCGA 4810 0.0 37.139294 6 GGGCGAT 9405 0.0 37.076023 7 TAGGGAT 5825 0.0 37.050644 5 CGTAAGG 670 0.0 36.44776 2 TAGGGAC 4250 0.0 36.390587 5 ATAGGGA 5620 0.0 35.85765 4 TACGGGA 1550 0.0 35.625805 4 TAAGGGA 5345 0.0 35.47989 4 ACCCGCT 2235 0.0 35.43624 34 TAGCCGT 305 0.0 35.34426 44 AGGGATT 6790 0.0 35.251842 6 GCGCGAC 2255 0.0 35.219513 9 CGTATCG 25 0.0023534696 35.2 36 AAGGGAT 6675 0.0 35.2 5 CAATCGA 25 0.0023534696 35.2 40 GGCGATA 1935 0.0 35.131783 8 TTAGGGA 5695 0.0 35.115013 4 GTAGGGA 5465 0.0 35.103386 4 >>END_MODULE